RNA id: XM_039813062.1



Basic Information


Item Value
RNA id XM_039813062.1
length 876
RNA type mRNA
GC content 0.50
exon number 7
gene id LOC120566537
representative True

Chromosome Information


Item Value
chromosome id NC_053121.1
NCBI id CM020918.1
chromosome length 40300294
location 21507069 ~ 21510003 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence


ATGGACAGACGCTTTGGACAGGTGCCGCTCACCGTTACGCACAGACACGGCGGGGTGAACCAACTTGGCGGGGTCTTCATTAACGGGCGCCCGTTACCGCACCTGGTGAGACAGCGCATCGTGGAGCTCGCCCAACGGGGTGTGCGTCCCTGTGAGATCTCCCGCCGCCTGCGCGTCAGTCACGGCTGTGTCAGCAAAATACTAGTCAGGTACAATGAGACAGGAAGCATCATACCAGGAATGATTGGAGGCTCAAAGCCCAAAGTGGCCACTCCAAGAGTTGTACAAATGATCCTGCATCTGAAACACTCCAACCCCACCATGTTCGCCTGGGAGATCCGAGACAGGCTGCTGCTGGAGCGAGTGTGCGACCACGACAGCGTGCCCAGCATCAGCTCCATCAACAGGATCATCAGAAACAAAGTCCAGCCCGAGTCTTGTGAAGTTGTGTCATCAGCATcatctgttgccatgggaacagcATATTCCTCTGAGTCCACCTATTCCATCAGTGGAATTCTGGGAATCAGGAAATGCAGCAGCAAACTGAATATGGAAGGTGGGGTCGTCTCCTGCAGCGTCTACCACGAGCAGCCATGTTCCTGTAATGACGCCTGGGGATTGTCCGACCCCTGCCTGAACTCTATCTCCAGCCTGACCTTTTACCCAAGCCTGCCAGCCAATCATAATCCAGACCTTATAGGGCCTCTGTGTCAATACAGCTGACCGAGGCGTCAAAGAAGAAAGAATATAATTATGTTAATGCAAAAAACAAGAACATTTCAAAACTGAATTGATTGAAATTGTAATTATTACAAGACTGACATCAAAAGAGAAACATAAATCACAATTACaaacatgtttaaataaaaCTAA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU143545 lncRNA downstream 16248 21490056 ~ 21490821 (-) True G106872
TU143511 lncRNA downstream 60343 21443397 ~ 21446726 (-) True G106852
TU143512 lncRNA downstream 60343 21443397 ~ 21446726 (-) False G106852
TU143506 lncRNA downstream 63980 21440824 ~ 21443089 (-) True G106848
TU143476 lncRNA downstream 105886 21394462 ~ 21401183 (-) True G106825
TU143666 lncRNA upstream 190946 21700949 ~ 21725692 (-) True G106959
TU143776 lncRNA upstream 281802 21791805 ~ 21792629 (-) True G106989
TU143777 lncRNA upstream 285808 21795811 ~ 21796361 (-) True G106990
TU143778 lncRNA upstream 288220 21798223 ~ 21800003 (-) True G106991
XR_005640545.1 lncRNA upstream 344405 21854408 ~ 21857861 (-) True LOC120567355
XM_039812765.1 mRNA downstream 6429 21494894 ~ 21500640 (-) True LOC120566376
XM_039812766.1 mRNA downstream 6677 21494894 ~ 21500392 (-) False LOC120566376
XM_039813288.1 mRNA downstream 68906 21429494 ~ 21438163 (-) False tbc1d10c
XM_039813287.1 mRNA downstream 68906 21429494 ~ 21438163 (-) True tbc1d10c
XM_039813290.1 mRNA downstream 83456 21416694 ~ 21423613 (-) False zgc:113229
XM_039813286.1 mRNA upstream 109860 21619863 ~ 21621608 (-) True LOC120566697
XM_039814152.1 mRNA upstream 182684 21692687 ~ 21697083 (-) False si:ch211-175m2.5
XM_039814151.1 mRNA upstream 182684 21692687 ~ 21697064 (-) True si:ch211-175m2.5
XM_039813572.1 mRNA upstream 374769 21884772 ~ 22015753 (-) False pcdh11
XM_039813571.1 mRNA upstream 374769 21884772 ~ 22015753 (-) True pcdh11
TU143328 other downstream 376099 21127838 ~ 21130970 (-) True G106728
TU142968 other downstream 1273145 20230908 ~ 20233924 (-) True G106443
TU142874 other downstream 1525936 19972415 ~ 19981133 (-) False fgf18a
TU142773 other downstream 2024511 19480018 ~ 19482558 (-) False tlr1
TU142573 other downstream 2287925 19215989 ~ 19219144 (-) False LOC120566717
TU143775 other upstream 280250 21790253 ~ 21790725 (-) True G106988
TU143804 other upstream 609682 22119685 ~ 22120067 (-) True G107015
TU143931 other upstream 1181157 22691160 ~ 22692831 (-) True G107117
TU144086 other upstream 1480984 22990987 ~ 22993229 (-) True G107235
TU144154 other upstream 1619706 23129709 ~ 23134785 (-) True G107284

Expression Profile