RNA id: XM_039813066.1


Basic Information

Item Value
RNA id XM_039813066.1
length 2407
RNA type mRNA
GC content 0.47
exon number 9
gene id LOC120566542
representative True

Chromosome Information

Item Value
chromosome id NC_053121.1
NCBI id CM020918.1
chromosome length 40300294
location 23238348 ~ 23243599 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

AACGTCGACCAGGACGCATTGTTTTTCCTGAAGGACTTTTTCAGCAATTTGGCTTCCTTTGTTAACCCTTACCTGCCTGTGGACCCTGCAACTGAAGTGAAGGCAGACCCCTACCAGAAGGCCTCAGAGGAGACGGAGTCAGCCGCTGGTCTGGGACCTGACCTCACAGCTTCTGTGGAAACTACCTTCAGCGAGCAGAGCTCCTCCTCTGCTggctccacctcctcctccgaCCAGCCAATCTACTTCCGGGAGTTCCGATTCACCTCTGAAGTGCCTATTTGGCTGGACTATCAGGGCAAGCATGTCGCCATTGAACAGGGAACGTTTGCAGGGATTCTGATCGGTCTGGCCCAGTTAAACTGTTCTGAGTTGAAGCTGAAGAGGCTCTGCTGCAGACACGGTCTCCTCGGTGTGGACAAAGTGATCCAGTATGCCGTCACAGAGTGGCTGACGGACATCAGGAAGAATCAGCTGCCGGGCATTCTGGGAGGTGTTGGCCCCATGCACTCGGTTGTCCAGCTGTTCCATGGAGTGAGGGATCTGTTCTGGTTGCCCATAGAGCAGTACAGGAAGGATGGACGCATTATTAGAGGTCTCCAGAGGGGGGCAGCATCCTTTGGTACCTCCACAGCATCAGCTGCTCTGGAGCTCAGCAACAGGCTGGTGCAGGCCATACAGGCCACAGCAGAGACGGTGTATGACATCCTGTCTCCAACTCCACCCCTGAACCGCTTTGCCATCACAGAAGGCCGGGCCCCCTCGAACAGGCCCCGCAGAGCTGCTCAACCTGCAGACCTCCGAGAAGGTGTGGCCAAGGCCTATGACACTGTCAGAGAGGGAGTGATTGACACAGCTCAGACCTTGTGCGATGTAGCATCCCGCGGCCACGAACAGAAGGGTCTACCCGGCGCTGTGGGCGGCGTCCTGCGGCAGATCCCACCCACTGTGGTCCGACCCTTAATAGTGGCCTCTGAAGCCACTTCCAATCTTCTCGGGGGCATGCGGAACCAGATCAAACCAGACGCCCGGAAGGAGGATTTCCTGAAGTGGCGCACGGATGATGGCCAAGAATGAAgacaacttttttttgtctgtgtgagagagagaaagtgtgtttgtgtgtgcaattATGACTTGTGGAAGTCTCGGCTAAAGGAGAAAATCTAGGGTTTGAATgtgtatttgcatgtgtgtatggACTAATGAGAGTCAGTGTTGGCTCcaatgcaaaaacaaagcaacgaCTAACGACTACTGCAGTTACTGACACCCAGTGTTTTATGTGGCTCCATCATACATGGACTTAACCAGATTTAATCATTCTGTTTGCATTTGGCAAGAGCTCTCCTCATATTCCTCCCCTCAGTGAGATACTAGTCTGCAGATTCTCCTTACTGTCTGTGCAAACATATCACCGTCACTCTCAACAGTTCATTTTCAATCCAACCAAGGGCAGATAGGATTATCACTCAAGGTTTACTTATGTATTGTGGGCACTCCATGTACTCTGAATTGTGCTGCTTCAAACTGTTTGTATTCTTATTTAAAGTAATGCTTTCTGGCACAATTTCACCTTCTTCCAAGGTCCATGGAGAAGAAGTAAGAGGAAGTAGGAAGAAGGTGAACTTATGTCAGAAATTCCTTCTCTTTGTATTCCAATTCACCCATCACTAGCTGCGAACAGTATACCTTTTATGGGTGCATTATGTGATGTGTTGTCCAGTGATGCTCGTAGTAGAGACAGGGAGATATTTTAATGAAGTGTCCTTTGCTAACACCCTCTAGATGGTTTTCACCCTCActtcacaacacaacacattgtCATTGGTTCAGCTTTGGTTCACCCTCCCTGCTACTGTCAAGTATACTGGCTCATATGGATACATACCTGACTGAGAACAAGTTTCCTGACTAAAAAGATAAACAGATCACACGAAGCCTGTAAACTCTGTAGCGCATTGGATTATTTTAAAGTTTCACAAAGTCAAGATAGACTTCAGTTGTCTGTAACTCAGACAGTTCTCCAGATATTAGCCGGTGGTTCTTCCTTCTGCATTGCAGCTCATTTGTGCTTCGGTTTCCATCAACAGTTAAAGACTGAGATCTGGATAACTCTTCTCGGTCTTCAGAAttgcttttctctcttctttagTTGCCTTCctgcatttttttatgtttctttatttgttttttattctgttAAAACATTTAAGTATTGTCATACTcgttttcaaaataagagttgAAAGGATGTGAATCTGGTGACGATGGAGGATGAAAAATTTAGTGttttgtggttaaaaaaaaaaagttttacatttttatcttttttgtttaagagtaaggtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtg

Function

GO: NA

KEGG:

id description
K17906 ATG2; autophagy-related protein 2

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU144140 lncRNA upstream 898 23237251 ~ 23237450 (+) True G107276
TU144112 lncRNA upstream 111214 23100041 ~ 23127134 (+) False flrt1b
TU144034 lncRNA upstream 241310 22950595 ~ 22997038 (+) False rom1b
TU144039 lncRNA upstream 279768 22958158 ~ 22958580 (+) True G107203
TU144024 lncRNA upstream 306186 22929269 ~ 22932162 (+) True G107191
TU144215 lncRNA downstream 27200 23270799 ~ 23271221 (+) True G107334
TU144222 lncRNA downstream 39380 23282979 ~ 23285214 (+) True G107341
TU144221 lncRNA downstream 41764 23285363 ~ 23287678 (+) True G107340
TU144238 lncRNA downstream 75793 23319392 ~ 23320649 (+) True G107353
TU144269 lncRNA downstream 173625 23417224 ~ 23417543 (+) True G107377
XM_039812867.1 mRNA upstream 1184 23215893 ~ 23237164 (+) True atg2a
XM_039812868.1 mRNA upstream 1184 23215893 ~ 23237164 (+) False atg2a
XM_039812872.1 mRNA upstream 24415 23201276 ~ 23213933 (+) False nxf1a
XM_039812873.1 mRNA upstream 24415 23201303 ~ 23213933 (+) False nxf1a
XM_039812869.1 mRNA upstream 24447 23200615 ~ 23213901 (+) True nxf1a
XM_039812888.1 mRNA downstream 852 23244451 ~ 23251375 (+) True trmt112
XM_039812889.1 mRNA downstream 853 23244452 ~ 23251375 (+) False trmt112
XM_039812882.1 mRNA downstream 9156 23252755 ~ 23262261 (+) True tgfb5
XM_039813668.1 mRNA downstream 67137 23310736 ~ 23314230 (+) True zgc:162144
XM_039814258.1 mRNA downstream 109659 23353258 ~ 23357565 (+) True nudt22
TU143997 other upstream 264587 22954972 ~ 22973761 (+) True G107168
TU143990 other upstream 372672 22862190 ~ 22865676 (+) True G107163
XR_005640584.1 other upstream 1776898 21448804 ~ 21461450 (+) False stx3a
TU143018 other upstream 2886181 20351721 ~ 20352167 (+) True G106465
XR_005640374.1 other upstream 3177010 20043031 ~ 20061338 (+) False LOC120566323
TU144145 other downstream 14672 23258271 ~ 23262229 (+) False tgfb5
TU144214 other downstream 25192 23268791 ~ 23270216 (+) True G107333
TU144280 other downstream 210968 23454567 ~ 23466184 (+) False ubl3b
TU144289 other downstream 244702 23488301 ~ 23491358 (+) False LOC120566905
TU144290 other downstream 244702 23488301 ~ 23491358 (+) False LOC120566905

Expression Profile