RNA id: XM_039813067.1


Basic Information

Item Value
RNA id XM_039813067.1
length 1801
RNA type mRNA
GC content 0.49
exon number 11
gene id si:rp71-46j2.7
representative True

Chromosome Information

Item Value
chromosome id NC_053121.1
NCBI id CM020918.1
chromosome length 40300294
location 23631502 ~ 23639346 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GCGCACTtcctgcagccaatcacagttCTGCTTTAACCAGTTTAATAAAGTTCCTTTTTTCCCCCGCAGTTTCAATTTATGTTCCGAGGAAACGGGCGTCTTGTTCTCGGTGCTAAGTATGTGTGTGAACAAACCAGCTCTGCCTATGTGGAACACACATCGGCTTAAAGTTAGAGAGACGAGCAGAAAGAGTCTCTTGTAAGAAAAGAAGATGTATCTATGGCGCTTCTCTATCGCCGTAACCCTCGGTTTGATGTGGTATTTTTCAGACTGTGGTCGCACAGTGACACAGTACTTTTTATGTTTCGTCTTTTATTTTTCTACTCCACTGTTATTCGGAAACAGTGGACGAGAGAGCAGCACTCAAACTGATGAAGAAACGAAGGAAAACCCACTCCAGGAAACTGTTGACCAAGAGTTGTTGGGTGACTTGACAGATGGAGGAGACAGCAAACAGGCTGAACCACTGGACTCTCAGTATCAACATGTAAAGATGTCTCTACAGCAAGTGTTTGAGTGCGCCTACGCCCAGCTGGTCCTGCCTTGGTACGGCCTTCCTGAGCCACGCAAGAACCAGCCTCTGTACCAGGTGCTCAGCAGAGAGTTTGACTTCGTAATCAACCGGATTATTGGGAGAGCCAAAGACTTTGATGTTTCCCAGGCCATCGTGGGCTCCGTTCGTATTTTGACCCAGCATTTGCATAATGCGAAGCAGTCTGACAGAGAGCTCTTGTTCAGCTCCAGAGCAGAGGAGATCGCAGTTCTCCGAGAGTTTTCTGATGCTCTAGTACGTAACCTTTTACCCAAATCTCTCTGTGACCTAGAAGTCAATCGCTGTACCTTAAATGAGGTTGTTGCCTTAAAGGGGTTGGGCCTGTTGGTGAAATGGCTGTCGGACCCCGACAACCTGAACCAGTTGGTGGTGAGCCAGCTGGACAGCGTGACCCCCAAAGGCTCTGTGGAGGATCTGTGTGGATCAGACCCGGATCAAACCTCTCTGGCTTCACAGGAGGGCGAGGGCAAGGGCAGTGAAGTGAGCTTGGAGGGAGCAGGGATTTCAACCAGCACCAGGATCAAGGCCAAAAGCAAAGCTAACAAGTTAAAAGAAGGATGGTCTAAATTTGTGGACAAGATGAAGTCTAAGAAGGCCACGAAGAAGATGAAAAACATGGAGCAGGATCTGATGCGGAGGATGACGTTGATCCAGGGAGACGTGTCCAACGAGGACGATGTCCGCAGCAGTGAGGGCTCCGTTAACAGCCAGCAGGACTCTGACAGGGAGGACGATGATCTGGAGAACTACTTGACAAGCGTCCAAGAGGACATGATGGAATTCAAGCTGTCGTATGAGATGTGGCGCGTTGGCTGCTGGGCTGTCAGCATCCCTCATGCCGACTGGGATGATGAGGAGCTAATCTTCACCGTTCACCTGGAGGAGAAGGGCAGCCCTGAGAACCTACAGTGGGACATCAGGAAGACCTACATGGATGTTATATACTTCCGTAACACATGGCAGgacTCGACCAACCTGCCCACGATCCTGGTGCTGGAGGAGTCTGAGGTCAACGATGAGTTTGAAGAAGAAGCCAGAGTATCAGTGGAGCATTTCCTGCAGGAGTTGGTTTCTGATAATCTGATTGGCCACACTCAACCGGTTTTCCAGTTCCTCTGCCCACTTGACAAACTGCTGAATGAGGAGGAACATTATGAAGGCGTGTGGGGCCTTCTGAGCGGCTTGGCTTACTTCTTGACTCCAGGTCAGGGAAAaagaagaattttttttttttttttttggtggtaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU144202 lncRNA downstream 367603 23242037 ~ 23263899 (-) False G107324
TU144201 lncRNA downstream 387562 23242037 ~ 23243940 (-) True G107324
TU144152 lncRNA downstream 407046 23170148 ~ 23224456 (-) True G107282
TU144160 lncRNA downstream 449785 23179692 ~ 23181717 (-) True G107290
TU144149 lncRNA downstream 458084 23092565 ~ 23173418 (-) False trpt1
TU144586 lncRNA upstream 152708 23792054 ~ 23792502 (-) True G107610
TU144596 lncRNA upstream 245251 23884597 ~ 23988901 (-) False rab41
TU144597 lncRNA upstream 245251 23884597 ~ 23971180 (-) False rab41
TU144595 lncRNA upstream 250559 23889905 ~ 23892263 (-) False rab41
TU144657 lncRNA upstream 560153 24199499 ~ 24259346 (-) True G107667
XM_039812539.1 mRNA downstream 1346 23627091 ~ 23630156 (-) True LOC120566236
XM_039813911.1 mRNA downstream 5137 23588130 ~ 23626365 (-) True mrpl11
XM_039814041.1 mRNA downstream 92116 23536699 ~ 23539386 (-) True ccdc85b
XM_039814157.1 mRNA downstream 104542 23520126 ~ 23526960 (-) True yif1a
XM_039814156.1 mRNA downstream 111492 23514615 ~ 23520010 (-) True si:ch211-145o7.3
XM_039813645.1 mRNA upstream 3942 23643288 ~ 23645496 (-) True slc25a5
XM_039813646.1 mRNA upstream 6789 23646135 ~ 23651722 (-) True slc25a43
XM_039814054.1 mRNA upstream 47248 23686594 ~ 23692809 (-) True chic1
XM_039813296.1 mRNA upstream 54924 23694270 ~ 23697490 (-) True cdx4
XM_039813298.1 mRNA upstream 70675 23710021 ~ 23757151 (-) True kdrl
unassigned_transcript_474 other downstream 257494 23373936 ~ 23374008 (-) True trnaf-gaa_66
TU144162 other downstream 444491 23184272 ~ 23187011 (-) False rnaseh2c
TU144153 other downstream 454502 23175691 ~ 23177000 (-) False trpt1
unassigned_transcript_473 other downstream 466074 23165357 ~ 23165428 (-) True trnaw-cca_12
unassigned_transcript_472 other downstream 470043 23161388 ~ 23161459 (-) True trnaw-cca_11
XR_005640439.1 other upstream 247478 23886824 ~ 23892301 (-) False rab41
TU144931 other upstream 934095 24573441 ~ 24579099 (-) True G107864
unassigned_transcript_475 other upstream 1222766 24862112 ~ 24862184 (-) False trnav-uac_15
TU145115 other upstream 1640257 25279603 ~ 25282199 (-) False G107989
TU145117 other upstream 1640257 25279603 ~ 25288086 (-) True G107989

Expression Profile