RNA id: XM_039813069.1


Basic Information

Item Value
RNA id XM_039813069.1
length 4345
RNA type mRNA
GC content 0.51
exon number 32
gene id LOC120566545
representative True

Chromosome Information

Item Value
chromosome id NC_053121.1
NCBI id CM020918.1
chromosome length 40300294
location 27815285 ~ 27836229 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TCCAGCATAACTTTGCGTACTTTTGCGCGCCCTTGACTCTCATCGTGAAGAAAATACGACAAGAAAGCAACATACTGATCGGTTAATAGCTAGCTATATTATCAGTGTTAGCAAAGAGCAGCTAACCTGCGGTTCAAAACCAGTTTACAATCTGTGGTGCCTCTTTCACTGAGAATGGCAAGTGGAGACTCCCTTTTGGACAGTCTTGAGGAGTTGGATGACTTCTCAGATTCTGACAGTGACTATGAGGCCACAACGAAAGCTACAAAGCGAAGAAAACAGCCAGTGACTGGACTTCAGCCACCCAAGAGACCCAGGCGTAAAGCTGCATTGAGGGTGTCCAGCACCAGTAGCAGCCCCAGCCCCACGCCTCAAAACCCCTCCCTGCAGCAGCACTCCCAAGGGACATCCAGGCAGGCCTCTCCTAGACCTGTGACGAGAGCGAACGAGGGAATCGGGGGAATCAGTGCAGAGGATATCTATGATGCTGTCCGCTCTGGAAAGAGTGCCATGGTGACGGTGGTGGACGAGTGGCTGGACAGCTACAAGCGAAGCCGAGAGGTGGGGCTGCTGGTGCTCATCAACTTCATTGTTCAGTCCTGCGGATgcaaaggtcagaggtcaagaGGGAGCCCACAAGTTGGGGGTTTGCTGAGAAATTTAAACAACCTCCATATCCTTGGAGATTATGATCAGAAGGATGGAGATTCAGTGAACTACCCTCTGTGCACCCCAGGCCCTCAGCTAAGGCGATTCAAAGCCAGCCTGTGCGAGTTTATTCGGGTTCTGGTGAGCTCCTGTCGGAATAGCCTCATTTTTGATGAGTACCTTTTCCCCTCCCTGTTGGCTCTGCTCACAGGCATGTCTGACTCCCAGGTCAGAGCCTTCAGACACACCAGTACCCTGCTTGcCATGAAGTTGATGACTGGTCTGGTGGAGGTAGCTGTGATAGTGTCGGTTCAGCTGCAGACCACCCAGCGGCAATACGACACGGAGAACAGCAAGAGGGAGCAAGACAGAGCCTCTGGCAGACTGGAGGAGCTGCAGGCCACCATCAGTGagCTGCGGGAGAACAGGGAGGAGGTATCCTCCATGATGAACGCCACTTTCcgtggtgtgtttgtgcaccGTTACCGTGACCGGCTGCCTGAGATCCGGACTGCATGTATTGAGGAGTTGGGCATGTGGCTGAAAACGGACCCTGAAGACTTTCTGAATGATGGGTGTCTTAAATACCTGGGGTGGACCCTGCATGACAAgCAAAGTCCAGTGCGTCTGCAGTGTGTTCGTGCCCTGCAGGGTCTGTACCAGGAGAAGGAATTCATTGGCCGCCTGGAGCTTTTCACCAGCAGATTTAAAgaGAGGATGCTCAGCATGGCACTGGACAAAGACCCAGAGGTGGCAGTGGAAGTGGTCAATCTGTTGCTGCTGATCCAACaGAGGACAGAGGAAGGTCTGAAAGAAGAGGAGTGCGGCCACATCTATCCCCTAGTTTACGCTCTAAACAGAGGCCTGGCGTCTGCAGCCGGCGCCTTCCTCTTTAACAAgCTGAAAAGTGTGATTGCCAGTGACAACCAGGAGAAtgataaaagtgaaaatgcagCCTTCTTTCAAATCCTCATCGCTTTCTACATCCAGAGTGAGTTCCATGAGCATGGGGCGTACCTGCTGGATAGTCTGTGGGATGTGGCAAGACCTGAGCTGAGAGACTGGGAGACTATGACGACATTACTGCTACAGGAGGCTGGTCTGATGTATGAGGAGGAGGGGGCTCTCATAGAGCTGATGATGTGTGCCATCAGACAGGCAGCACAGGCAACCCCCCCTGTTGGGAGAACTCAGGGCAAGAAGATCCTGGGTATGAAGGATAAGAAGGTCCAGGAACAAGACAGGAGACGTGTCACCACACACTTCATCCCCTTACTGCCCCAGCTGCTGGCCAAGTACTCAGCGGATGCAGGGAAGGTGAGCCTCCTTCTCAAAGCTCCCCTCTACTTTAACCTGGAGGTGTACAACAGTGCTCCGCGGCTGGAGAAGTATCTGGACCTGCTGCTGTCTCAGATATGTGGTATTGTGGAGAAGCACACAGAGGCCACTGTGCTAGAGGCTTGCGCCCAACTGGTCAGCACCCTTTGCTCCGAGTCCTACACCTTCTCCTCCCGCGCACACCTGGCATTCAGCCAGCTGCTGGACAGCCTGACCGAGTGCTTTAGCACCTACTTAAGTGACCTGCTGCAGgGTACTGCAGATGACGATGACGTATACAGTGCAGCCACTGCTTTAAAAAGGATTGCAGCCCTCAGCAGTGCCAAGGACCCGACAGGCTGGAAGCTGTTCGACTCTTGTCTTGAGCTTCTGAAAAGCAGGATGGAGTCCAGAGAGCTCGACAAGGAGCTCATGGTGTCGGCTCTGAAGTGTGCAGCCTTTTACCTGATGTGGGCCAAAGTGAATGCAGTCAACTCCACACCAGCTGAGGGGGAATTGAACCGTCTGAAGAAGGAGATGCGTTCGTTCTGCAGAGTTTGTCAAACGTGTCTGTCTTTGAACCAGgctgagatcagagatcaaGCATTTGAGCTGTTGTGTGACTTGCTGCTCTTGTACAGTAGGAGTTCAGCTCGCTCTGAACCCGCCCTTCAAGCGCTGGTCCACCTGCCATCGGATTCCCTGCGCTCTGAGATGGCTGCTTTCCTCCTGGACTACGTCTTCTCTGACACTGAAGATGCTGAGCTCAACGttgagaatgaggaggagatgaagaTACGTCTTCTCCAGAGGAAGCGCAACCAGTTGTCTGGCTACTGCAAGCTGGTCATCTACGGGGTGCTGGAACTCAGCGCCGCCACCGACGTCTTCAAGCACTACAGCAAGTACTTTAAAGACTTTGGCGACATCATTAAAGAGACTGTAAGCAAGAGCAAGCTCATCAGTCCCATTCAGAGCGCCAAGACTGTGTGTCTGAGCCTGCAGCAGctgttcTCAGAGATGCTTACGGAGGACCACAGCAGGCAAGATCTCGGTGAGATTAGAGACTTGGCCAAGAGGCTTGCCATGAGCTTTGGCATCGATCTTCATCGTGTCCGTAAACCACTGGTGGCCCTGCACATGGACGGTGTACGTTTTGCATTTCGGGAACCACGGGAGGGAGAAGAGCAGCACATGAATGTGACCTTCTTGGAGATCCTCAGCGAGTTCAGTTTCAAGCTGCTGCAACCGGACCGCACCAAACTGGCTGCGTTTGTGAAATCAGAGTGTCCCAGTGCTGCCCTCTCCTGGCCGTCAGTCAGAATGTATCAGCGTTCCTTGGAGGGCCGCTCCTCTTCTAAAGCCAGAAAACAGGAGGAGGGAGGTGATGTCGTCTCCACACATAGTAGCCCTGTAGCTAAACGCAAGAGAACCACTGCTCAGGGTTCAGTTGCCAGCACAATCAGAGGATCCTGGTTGGACAGCAGCAGTATCCACAGCGTCCTGCACACGCCAGCCCTCACCTCCACTGCCCAGAGACAGTCAACCAAGGTCCTGGCCTCCAAAAAACCCAGTGCCACACAATCGGATATCAGCAGCGAGGATGAGTTCTCCTTAGGGTCCCAAATACGAAAGGTAAGGCCCGTTAAACGACACCAGCTCTCCTCCAGCCAGACTGGCCCTCCTTTGGATCAGCAAGACCTGAACTCCCACCTCACCTTGCTGTCTTTGATTGAGGACGAAGACGCAGAAAGAGAAGAGCCTGAGATTGAGGATTACGAGAGTGACTCTGAACACGAATCTACATATACactgCCTTCCACACGCCACACCTCCGCCAGTATCCTTGATGAGCTCTTTGAGTGATGACACAGAGACCCGGACCGCCTGGGGAACAGCACTTCTCTTTCTTTAATGTATCTCTTTTAACACTACTGCGTTTTCAGTGGTTTCGGTACATTTGAGTGTATAATTAGGGCCAACTGTTCTTCTACATGACAGAGATCACCTATCTGATCTATTTCAGTCATTAATTTTGTTGGAGGGGAAGAGAAAGTCAAAATGATTATGAAGTTTGGGGACAAAGGTTGTTGCCATTCACAATTAGGAATGTTTGTTTTGaacacaaaatgtttaaaagaaatgtgttgAAGTTCAGTTAGATCCCTGTTGGCTGGCAGCAAACTTAGTCTTTCTTCCTGTGTTCCACATTTTGAATTTAGTTTCATATCTTTCACTGTTGTTGAcagctttttgttgttgttgtttttttgtttaacacTTGTTAATTTAATGTAAATTAAAAGATGCTTGATTGAGCAAAGTAACACTAAAAGTGTATTTAATAAGATCACATTACAGTGTGATGTACATAAATTCC

Function

GO: NA

KEGG:

id description
K06671 STAG1_2, SCC3, IRR1; cohesin complex subunit SA-1/2

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU145614 lncRNA downstream 28502 27786110 ~ 27786783 (-) False aurkb
TU145588 lncRNA downstream 42304 27772676 ~ 27772981 (-) True G108353
TU145587 lncRNA downstream 43214 27771851 ~ 27772071 (-) True G108352
TU145586 lncRNA downstream 56590 27757793 ~ 27758695 (-) True G108351
XR_005640565.1 lncRNA downstream 419254 27394324 ~ 27396031 (-) False LOC120567396
TU145629 lncRNA upstream 1339 27837568 ~ 27839107 (-) True LOC120567057
XR_005640513.1 lncRNA upstream 2109 27838338 ~ 27838921 (-) False LOC120567057
TU145664 lncRNA upstream 117250 27953479 ~ 27954107 (-) False LOC120566991
XR_005640501.1 lncRNA upstream 131835 27968064 ~ 27970362 (-) True LOC120566995
TU145677 lncRNA upstream 144821 27981050 ~ 27981447 (-) True G108422
XM_039813205.1 mRNA downstream 1096 27803358 ~ 27814189 (-) True mcm7
XM_039813204.1 mRNA downstream 12949 27799826 ~ 27802336 (-) True LOC120566642
XM_039813202.1 mRNA downstream 25074 27780132 ~ 27790211 (-) False aurkb
XM_039813201.1 mRNA downstream 25074 27786037 ~ 27790211 (-) True aurkb
XM_039813203.1 mRNA downstream 29804 27780132 ~ 27785481 (-) False aurkb
XM_039813848.1 mRNA upstream 15458 27851687 ~ 27865367 (-) False LOC120567058
XM_039813847.1 mRNA upstream 15458 27851687 ~ 27865366 (-) True LOC120567058
XM_039813751.1 mRNA upstream 72691 27908920 ~ 27910963 (-) True LOC120566982
XM_039813755.1 mRNA upstream 78849 27915078 ~ 27917448 (-) True LOC120566987
XM_039813757.1 mRNA upstream 89195 27925424 ~ 27927535 (-) True LOC120566989
unassigned_transcript_477 other downstream 36071 27779133 ~ 27779214 (-) True trnal-aag_2
TU145467 other downstream 553165 27258247 ~ 27262120 (-) False LOC120567151
TU145368 other downstream 749338 27065418 ~ 27065947 (-) True G108191
TU145357 other downstream 814274 26989264 ~ 27001011 (-) True G108181
TU145230 other downstream 1354578 26457995 ~ 26460707 (-) False rpl36a
TU145627 other upstream 1619 27837848 ~ 27839107 (-) False LOC120567057
TU145628 other upstream 1619 27837848 ~ 27839107 (-) False LOC120567057
TU145691 other upstream 185508 28021737 ~ 28023229 (-) True G108433
TU146164 other upstream 2824683 30660912 ~ 30661623 (-) True G108777
TU146169 other upstream 2833302 30669531 ~ 30670849 (-) True G108781

Expression Profile