RNA id: XM_039813132.1


Basic Information

Item Value
RNA id XM_039813132.1
length 4711
RNA type mRNA
GC content 0.50
exon number 27
gene id LOC120566601
representative False

Chromosome Information

Item Value
chromosome id NC_053121.1
NCBI id CM020918.1
chromosome length 40300294
location 20585982 ~ 20699203 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CTGCAGAGCGCAGGCTCCTCCCCAGCCAGCTCTCTCTGACCGGACTGTCAGAAGAACAGGAAGACTCCTCTACCGCTAAAGACGTATTCGCTTACCGCTGTCATTAGGGGTTAAAAAGTTAACTAAACTTGGAAAGCAGTCATGGAAACTAATTTAGGAGACACAGTAGGTGCAAGTCATCTGTAATACCAACTCGTCGCCCTTTTTGTAGTCGCCGAAACAACTCGTGGAAGTGGGAAGAGCGGAGTTGTTTTCTTTCCACGGAGACTTTACCTACTGTAGTTAGACGAGCTAGCATAGCTAAAGCTAACGGTTAGCTCAGTTACCGCATACTTCGGGACATAAAGTTCAAATTGTTTAAAGCTTCGGTTTGTGTCACATATGGATACTGGTTGAATAAATCCTcgtttgtattttataaacgCAACAGGTTGTTTTCGTACTTGTCGTCCCGAGGACTTGGGGCTGTGCTTTGAATTTCCCTCCTTCAGTGATACAGACAGGCGGCTTAGCGAAGGGCTCGGGGTAGTTGGCTTTTTACCAAATCATTAGCAACTTTGTGCTAATTGTAGCTAAGTTAGCAAGGGCTCTAGCTTAGGCCAAAGGGAATTAACAGTTGGCTTTTCTCAAAGTTAGGAAATACCGTGGGAAGAAACgtttgcttttgtttgttttttacgttTGAGTGCGGGGGAAGATTAACGTTACCGCCACACAGGGTTATTTTGACACGCAAGGAAACGGATTAAGTTATAAATATGGATCCAAACACGGGGAGCTCTGCCTCGGCTGCAGGTCCCAAGAAGGACAAGAAATCGAAGAAGAGCTATGAGGATGGAGATGGGAAAAAGAAATTTTTGGAGCGTTTCACCAGCATGAGGAAAAAAGACAAGGAGAAGCCAGGCCAAGTGCCGAGTCAGAGACACTCTTCAGCTGCCAGCTATGAGCTCAACGCTCCGAGTGCTATGCTGCATGATCATTCTGATGAATACGTCCTGGAACTCTTCGAACAGATGCTGGTGGATATGAACCTGAATGGGGAGAAGCAGCAACCTCTAAGGGCAAAAGACATTATGATCAAACGAGAGATGGTCTCCCAGTACCTCCACACGTCTAAAGCTGGTCAAAACCAGAAAGAGAGCGCCAAATCGGCCATGATGTACATCCAGGAGTTAAAGTCAGACTACCGAGACACACAGCTGCTGAGCTGTCTGGAATCTCTGCGAGTCTCTCTCAATAACAACCCTGTCAGTTGGGTGCAGAACTTTGGAGATGAAGGGCTGGCCCTGCTGCTGAATCTGCTAAGAAGACTACAGGAGGACAAAGACGAGTACCCAATGATAGGAGTGAAATGTCAGCACGAGATCATTCGTTGTCTAAAAGCCTTTATGAACAACAAGTATGGTCTAAAATCCATGCTGGAGTCAGTTGAGGGAATTCCTCTGTTGGTCAAAGCCATCAACCCTCAGGTGCCACATATGATGGTGGATGCTGTCAAGCTCCTTTCTGCCATCTCAATATTGGAACAACCTGAGAACCTTCATGAGCGTGTTTTGGAGGCCATTacagaggaggcagagagacggGACATCGAGAGGTTCCAGCCTCTCCTTGCTGGCATGAACAATCACAACATTGCTCTTAagggtGGCTGCATGCAGCTAATAAACGCCTTAATAAGCCGGGGAGAAGAGTTGGACTTCAGGATCCATATTCGCTCTGAACTGCTAAGATTGGGACTCAGAGACCTGCTGACGGAGGTGCGAATGATAGAAAACGAAGAGCTGAGGGTGCAACTCACGGTGTTTGATGAGCAGGCTGAAgatgactctgaggacctcaAAGCACGTCTTGACGACATTCGCATTGAGATGGATGATGTGAGGGAAGTGTTTGAGATCCTAGTCAACACTGTGAAGGACTCCAAGGGCGAAACCCACTTCCTGTCTGTGATGCAGCACCTGCTGCTGATCCGTAATGACTATTTGGCCAGGCCTCAATACTACAAGTTAATAGACGAGTGTATCGCTCAGATCGTGCTTCACAGGAATGGAGCGGACCCTGACTTCAAGTGCCGTAAACTCAGCCTCAACATTGAAGGCTTGATAGACAACATGGTCGACCAGACCAAGGTGGAAACTAGCGAGGCCAAGGCAGCTGAGCTGGAGAAGAAGCTGGATGCAGAGTTGACAGCACGCCACGAGTTGCAGGTGGAGCTGAAAAAACTGGAGGGTGACTATGAGCAGAAGCTGCAGGATTTAAGCCAAGACAAGGAACAGCTGGCCACTGCTAAGCTAGAGCGAGAAAAGCACAACCAGGAACTACAACAACAGCTAAGCACTCTGCAACAACAGATTGAAAAGCTGTCTAAAGATCTGGAAGAGGCCAAGACCAAAGTAGTCACAGTTACTGTTCCTGTGCCAACACCTGGTTTCTCTCTTCCACCTGCCCCTCCTCTCCCTGGCCAGAATGCAGGTATGCCCCCTCCACCTCCGCCCCCACCCTTACCAGGCCATGTAGGCATGCCTGTTGCCCCATCCCCTCCTCCTTTACCGGGTCATGCCACTATTCCTCCCCCACCGCCTTTACCAGGCATGCCAGGACCTCCACCACCCCCACCTCTCCATGGCATGCCTGGACCTCCACCACCCCCGCCTCTCCCTGGCATGCCAGGACCGCCACCCCCTCCACCCTTCCCTGGGATGGgacctccaccaccaccaccacctgtgTTTCCTGGCATGCCCCCTCCACCACCAGGCCCAGGCATGCCTCCACCTCCATCATTTGGCATGGGGGGCTGGGGTCTCGCTGCACCACCCTCACTGCCTTATGGGCTCCAGCCTAAGAAGGAGTACAAGCCTGAGGTCCAGCTGAAGAGAGCCAACTGGAGCAAGATCGGACCTGAGGACCTCTCTGAGAAGAGTTTCTGGACCAAGGCAAAAGAGGAGAAATTTGAAAACAATGAGCTCTTTGCCAAACTCACCTTGGCCTTCTCCTCACAGAcaaagaCTACTAAAGCCAAAAAGGAGCAGGACGGCGGAGATGAAAATAAGCCGGCACAGAAAAAGAAGGTGAAGGAACTAAAGATCCTCGACTCCAAGTGTTCACAGAACCTTTCCATTTTCCTGGGATCGTTCCGTCTCCCGTATGAGGAGATCAAGATTGCCATCCTGGAGGTTAATGAGAAGGTCATCACAGAGTCCATGGTTCAGAACCTGATCAAACTACTGCCAGCAACAGAGCAGCTGAGTGTCCTTGGTGAGATGAAGGATGAATATGATGACTTGGCTGAGTCCGAGCAGTTTGGAGTAGTGatGTCCGGCGTGAAGCGGCTGATGCCACGGCTTCAGGCCATCCTGTTCAAGCTGCAGTTTGAGGAGCAGCTGAACAACATCAAGCCAGATGTAGTGTCTGTGACAGCAGCCTGTGAGGAGCTTTGTAAAAGCCAGAATTTCACCAAGCTGCTCGAGATCATCCTCCTTGTCGGGAACTATATGAATGCTGGCTCGCGCAATGGAAATGCATTTGGCTTCTCCATATCATACCTGTGCAAGCTGCGTGACACCAAATCAGCTGATCTGAAGCAGACACTGCTCCATTTCCTCGCTGATGTGTGCAAGGAGCAGTATCCGGAGGTCATGAGCTTTACCGACGAGCTCATCCATGTGGAAAAGGCCAGCAGAGTTTCTGCAGAGACAATTCAGAAGAACCTTGAGCTGATGGGCCGTCAGATCAAGAGCCTGGAAAAAGATCTGGAAACCTTCCCTCCTCCACAGAATGACAAGGACCTGTTTGTGGAGAAGATGACCATTTTTGTGGGTACTGCCAATGAGCAGTTTGAGAAGCTGGATCTACTGCATAAGAATATGGAGAAGCAATATTCCGACCTGGGAGAGTACTTTGTCTTTGACCCGAGAAAAATGTCCGTAGAGGAATTCTTTGGGGACCTCAACACCTTTAAAAACATGTTCCAGCAAGCAGTAAAGGAGAATCAGAAGAGGAAGGAGGCGGAAGAGAAGCTCAAGAGGGCCAAGCTGGCCAGGGAAAAGgcagagaaggagaaggaggagaaactCAAGAAGAGCCAGCTTCTTGACATCAACACAGAGGATGATGAAACTGGTATCATGGATGGCCTGTTGGAGGCGCTGCAGTCCGGCGCTGCtttcaggagaaaaagaggacCACGGCAAGCAGccAACCACCGACGAGCTGGTCATGCAGTGACCAACATCCTGGCCAAAGAGCTGATGCAGGAAGACGCGCCTTCATCCAGCAAACTGCCTGCTAAGAAGAAAAAGTCAGAGGAGAAGGTGGAGCCTAAACTAGAAGGAGCTGAGTCATTAGAGGAGTTACTGGAGCCTACTCTCTCTCGGTCCAATTAGGCACACAGGGCAGAAAGTTTTTTACTCAGAGTTAGTGATATCCAAACGCAGATGTATTTGTAGCCATTTCAGGGGCCGATATCAATCTGAGATTAGCTCACAGGAAAAAAAGCCCTGTTTCCCCGACTCTTGTCTTAACAGGACCATCTTTTAGGGTAGTATTGATTGTGGCTTCTCGGAGGACAGGGAGTGGCAGAGGATGAAGGTGGGGCTCCGACCTCAGCCACAACTCCTGGATGGATGTCCCTCGTCATCAACTTTTGGATCTTTGCCATTGTCATAAAGATTTAATTGCTTTCTTCATGTGCACATATCtgttcatg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_005640524.1 lncRNA downstream 24638 20560020 ~ 20561344 (-) False LOC120567131
TU143133 lncRNA downstream 24708 20559937 ~ 20561274 (-) True LOC120567131
TU143115 lncRNA downstream 40013 20506969 ~ 20545969 (-) True G106556
TU143107 lncRNA downstream 90404 20488887 ~ 20495578 (-) True G106548
TU143094 lncRNA downstream 149179 20435969 ~ 20436803 (-) True G106535
TU143210 lncRNA upstream 242328 20941531 ~ 20943593 (-) True G106631
TU143211 lncRNA upstream 246835 20946038 ~ 20947573 (-) True G106632
XR_005640582.1 lncRNA upstream 256134 20955337 ~ 20960892 (-) True LOC120567470
TU143225 lncRNA upstream 300756 20999959 ~ 21000211 (-) True G106645
TU143333 lncRNA upstream 370938 21070141 ~ 21073913 (-) False LOC120566356
XM_039814417.1 mRNA downstream 604349 19971833 ~ 19981633 (-) True fgf18a
XM_039814418.1 mRNA downstream 604354 19971833 ~ 19981628 (-) False fgf18a
XM_039812992.1 mRNA downstream 834275 19741886 ~ 19751707 (-) True LOC120566486
XM_039813054.1 mRNA downstream 858691 19723502 ~ 19727291 (-) True LOC120566528
XM_039812996.1 mRNA downstream 887215 19598361 ~ 19698767 (-) False spock1
XM_039812634.1 mRNA upstream 2339 20701542 ~ 20703679 (-) True LOC120566290
XM_039812559.1 mRNA upstream 16624 20715827 ~ 20770031 (-) True trpc7b
XM_039814436.1 mRNA upstream 115275 20814478 ~ 20834647 (-) True dock2
XM_039814435.1 mRNA upstream 173654 20872857 ~ 20924459 (-) True LOC120567463
XM_039814445.1 mRNA upstream 264186 20963389 ~ 21003969 (-) False LOC120567468
TU142968 other downstream 352058 20230908 ~ 20233924 (-) True G106443
TU142874 other downstream 604849 19972415 ~ 19981133 (-) False fgf18a
TU142773 other downstream 1103424 19480018 ~ 19482558 (-) False tlr1
TU142573 other downstream 1366838 19215989 ~ 19219144 (-) False LOC120566717
TU142417 other downstream 1894572 18687788 ~ 18691410 (-) True LOC120566257
TU143328 other upstream 428635 21127838 ~ 21130970 (-) True G106728
TU143775 other upstream 1091050 21790253 ~ 21790725 (-) True G106988
TU143804 other upstream 1420482 22119685 ~ 22120067 (-) True G107015
TU143931 other upstream 1991957 22691160 ~ 22692831 (-) True G107117
TU144086 other upstream 2291784 22990987 ~ 22993229 (-) True G107235

Expression Profile