RNA id: XM_039813198.1


Basic Information

Item Value
RNA id XM_039813198.1
length 4564
RNA type mRNA
GC content 0.49
exon number 20
gene id LOC120566637
representative False

Chromosome Information

Item Value
chromosome id NC_053121.1
NCBI id CM020918.1
chromosome length 40300294
location 21196765 ~ 21219431 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TTTTATAAGCATAGAGTTCCTCATGTCACAccgtgtgtgtctatctgtttTCTAAGTCCGGCTACATGactaaaacctttaaaaaaacacacaaaaaaacacctgtATGAGAAGGGGAATTCTACGTGCGCCGTCTTTACGGTAAAGCCGCTTGTTGATCCCGCCCTCTCTTTGATAGAAAACTGTGATGTCGCTTCGTCTTTAACGAGCTTGACCCAGAAGAACCCAGggaaggaggggaaaaaaacacactaaaaaCGGAATAGTCTGGAAGGGGTCGGGACAGGTTTTCAACGAGCAAGAACGGGCGTTTAGGGGATGCAGACATAGAACGGCTGAAACTGACTGACTCCTACATAAACGGCACACAGTACAGAATGGTGGACCCTGCACACGGCGCTCTGGATGAGAGCTACACACCAGAGGACGACTCCCAGGAAGTGCGCTCAGTCTTTTCTGACGACGGAACCACCCGACGGCCAGACAATGGCATGAAGAAACCAATCTCACGCACAGTCCTGCCCTCTGACTCGATGTCCATCGACGGGGGCTTGTCGGTGTCTGGTATGGGCGGCTACAGCGCCACACTGGACCGTCCTTACAGACATGCTGGACCAGCAGATTACCCCACGGCCACAGTTCCCAGAAACTACCACTATGCCCCTGTTGGCGGTTACGATGACTACCGGGGAGGCCCACCATCAGAGGCGTACACTAGCCTGAGCAGGGGCTCACACATGGATGACCGCTACAGGCCAGTTGACGGCTACAGGACCCTGGACTCTGGCTACCGGGCACCAAGCCGCCAGCAGCTTGACCCGTATGCAGCACAGCCCCAGGTGAGCCGCGGAATGAGGGCCTTGGGCTCAGCGTTGGAGGTGCGGTACGGCCACGGCCACTACGGCCTGGAGGATGACCAGCGCAGTGTAGGATATGATGACTATGGCATGGGGCCTCCACCCATGCACCCTGGAGGCTACGGTACCATGCCACGCCTAGGTCCCGGCCCCGGGGGTATGGACAGACGAAGACTCAGGAGCTGTGAGGATACTTTGGACGGCGACATGGGAGGAGTTGATCCTTATACCTGGGGCGTTCCCGTGCCGATGGAGAGGGGCAGCATGGCTTCACTGGACAGCACGCTGAGGAAGGCTCCTCCTGGTTCATGGAGACAGCCAGAGCTGCCTGAGGTCATCGCCATGTTGAACTACCGTCTGGACCCTGTCAAGACCAACGCAGCCGCATTCCTCCAGCATCTCACATTCAAAAACGATAAGGTTAAGTCGGAGGTGCGTCGCCTGAAAGGCATCCCATCCTTGGTGTCACTGCTGGACCACCCCAGCAAGGATGTGCACCACTCGGCCTGCGGAGCACTGAAGAACATTTCATATGGGCGAGACCAAGAAAACAAGATTGCCATCAAGAACTGCGATGGAGTGCCTGCTCTGGTTAGGTTACTGAGAAAAACCCACGACCAGGACCTCACTGACACTATCACAGGCACCTTGTGGAACCTCTCATCCCATGACTCCGTAAAGATGGAGATTGTGGACCACGCCCTGCACGCCCTAGTTGACGAGGTGGTTGTTCCTCACTCCGGCTGGGAGCGTGGGAGcaatggaggagaggagagctgCAAACCACGCCATCTGGAGTGGGAGACCGCCTTGACCAACACTGCTGGCTGCCTTAGGAATGTGAGTTCAGAACGCAGCGAGGCCAGGCGAAAGCTGAGAGAATGCACAGGATTGGTGGATTCGCTCATGTACGTTGTGCAATCACAGATCAACCGCAAAGATGTGGATAACAAGTTGGTGGAGAACTGTGTCTGCCTCCTGAGGAATCTGTCCTATCACGTTCACCGTGAAGTCCCCGGCAGTGAGCGCTACGCAGAGACCACACCCCTCAACCAGGGGCCGGCCACCGCTAACAAAGGAGGCTGCTTTGGCTCTCGAAAGGGCAAAGATGAGTGGTTTTCAAAAGGAAAGAAGGATGGAGATGATGGGAGTGGAGATCAAGTCGACATTCCGAAGAGGACAACACCTGCCAAAGGTTATGAGCTGTTGTTCCAACCAGAGGTGGTTCGTGTTTACACATCGCTGCTCAGAGAGAGCAAGAACCCCTCGGTGCTTGAGGCTGCTGCCGGTGCCATCCAGAACCTGTGTGCCGGCCGATGGGCTTATGGTCGGTATATCAGGGCCACTGTGCGTCTGGAGAAGGGTCTTCCCATGATGGCAGAGCTACTGGCTCATGGCAATGACCGTGTGGTTCGGGCAATGTCCGGAGCCTTGAGGAACCTCTCCATCGACAACCGTAACTGCCAACTGCTCGGTTTGCATGCAGTGCCTCACCTTGTGGCCAACCTGCCTGGAGGCCAGAATCAGTCAGGGCGCAATCTATCCGAGGAGACTGTGGTTTCTGTATTGAGCACGCTCACGGAGGTGCTAGGCAACAGTGTGGAAGCAGCAAAGACCCTCCGAGCCTCCCAGGGCATTGAGAGGCTGGTGCTTATCAACAAGGACGGCAAGCGCTCAGAGCGTGAGGTGCGGGGGGCCGGCCAGGTGCTGCAGCTTGTCTGGGCCCACAAAGAGCTGCGCAAGCCTCTTGAGAAAGACGGCTGGAAGAAGACGGACTTCATGGTCAATCTCAGCACCACAAACGGCCCGAGCACACGAGCCAACGGCACCTATGAAGACAGCACCACGCCACTGCTAGACAGAGGGGAAAAGAGGGACATGATTCCACTAAATGACCTCGGCCCTGATGCCTACTCAACACTGGaccagagggagaggagacacACTCTGGATGAAACCACAGACACTTTACCGCGAGGGGTGTATGGGGGCAGAAAGGGCTCCTTGCCCCTGTTGGACTCCTACGATGAAAAACTTATAGTGTGCATCACCCAGACTGGGCCGTCCCTGCCCTACCACTGCTACTGAGGAGAGAAGATCTAGATGGACGGACTCTCCCTCtcgaccccccctcccccctcccctcctctctttctatctctatCACCACACAGATGGGATTAGAAGATGAGGGTTGGCATCCAAAGAAAGTGGCCGTGTTGCAGGCAGAAACGTTTCATgcaacgcacacacacctacagaaCATACACACCTACTTTTTACGAATTCATTCAATTGTAGCAACAGaaataaattcagtttttttttaaattataattcTCCTGTAAAGGCAATCACCTGTTGACAATCATTTTTAATTCCGGTGTTGTCctgcttgtttttatttttcttcgcTATTGTCAACATTTTGGTAAATTGTCATGCCAACACCTGCATCCTGATGATGAATTTTTATGTAGACTTCTATGTagggtatatactgtatataaaaagaaaatgggaTGACTGCATTAGTTTTGGCTCATTAATTTAAATCATCCCTTTACTGGGATTGTTGGGAGGTTTGGGCTGACAGACTGACTGCCGCCCTCTAGATTGAGAATGTTGTTTATATAGGAGTTATTTTCCTGTCTAGAGTTATTTTCTCTTGGTTGGGATGAGCACAGGTGTAGACAAGAAAAGGGcaggtgtgtgtatatttgtcatACAGTAAGCCtgttaccgtgtgtgtgtgtatgtgtgtgtggaaaatGAATATGGACCTTGGAGtgattgtttttgtgtgcgtgtgtgcacggACCAGACCCATAAGATGAATATTTCATCCGCTCatgttgtctgtttttttggtgTGCGTTTACTCCTCTAACAAAGCAGTTTTGTTTTGCCTCTTTTTGTGTTTGACACCTTAATTTTTCAAACACAAAATTGGCACTGAAATGTGAAGCTGGGACCATCGTACACTACTAAACCACTGAAACATTGTGACATCCTGCTTCAGAAACCATTCCTGGCCCAACTGTAAAACATTCACACTATAGACAAAACCTACTTAATggtttattctttatttagaaAGTAACCAACACTTCAGGAGGGTCTTTTGGAATAATTATCTCCTATTTAAATCTTCTTTTTTGAAATCACtacttgctgtttttttttgttttttttgttggaataTAATCGTTCATACTGACATTCTTGTTGTgccgttttacaaaaaacacacaaatatggGACAATTCCTCACTCAGAGGACACTCGATTTTTAACAGACCAATTGGGGAGAGATACTGACTTATAATTTAATTTGGGAAGTGGATAAAAGCACATTTTGGTTTATGatccattttgtttctttcattttgtgTCAGGTTTGTTTAAATTTTATTTCGGGTTTGTATGTATGGGAGCGGTGGGTGAGAGCATTATGCAATTTGTTCAACTTTTTAGTCCCAGTTTTACTTCTGAGTTGTTTTTAAGGCAGAAGAGACCAATCatctgtttagtttttttttagttttttttttaactctccaCAGTATATTTGTAATGTTGCCTATCCATGTAAAATTATGATGTACCATTCATACCTGCCTTGGCTCTGAGAAGTTGCTTTTTTCAGTAAAGTATGTAACTGttaaaactgttgtttttataaataaaaatcttttcTTAGACAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU143360 lncRNA downstream 14065 21179985 ~ 21182700 (-) False LOC120566634
XR_005640437.1 lncRNA downstream 32702 21149902 ~ 21164063 (-) False LOC120566633
XR_005640436.1 lncRNA downstream 32702 21160341 ~ 21164063 (-) True LOC120566633
TU143341 lncRNA downstream 91791 21101252 ~ 21104974 (-) False LOC120566885
XR_005640391.1 lncRNA downstream 125209 21070626 ~ 21071556 (-) False LOC120566356
TU143417 lncRNA upstream 33476 21252905 ~ 21256647 (-) True G106784
TU143431 lncRNA upstream 66885 21286314 ~ 21287781 (-) True G106793
TU143444 lncRNA upstream 92934 21312363 ~ 21314127 (-) True G106802
TU143459 lncRNA upstream 140887 21360316 ~ 21408289 (-) True G106813
TU143475 lncRNA upstream 170183 21389612 ~ 21401183 (-) False G106825
XM_039813061.1 mRNA downstream 101 21187612 ~ 21196664 (-) True LOC120566536
XM_039813188.1 mRNA downstream 9112 21178852 ~ 21187653 (-) True LOC120566634
XM_039813189.1 mRNA downstream 9112 21180737 ~ 21187653 (-) False LOC120566634
XM_039813190.1 mRNA downstream 17993 21176882 ~ 21178772 (-) True crybb1l1
XM_039813060.1 mRNA downstream 58327 21136616 ~ 21138438 (-) True LOC120566535
XM_039814155.1 mRNA upstream 788 21220217 ~ 21230375 (-) True LOC120567254
XM_039814154.1 mRNA upstream 788 21220217 ~ 21229827 (-) False LOC120567254
XM_039812670.1 mRNA upstream 13877 21233306 ~ 21238523 (-) True smtnl1
XM_039812663.1 mRNA upstream 82641 21302070 ~ 21308135 (-) True tmx2a
XM_039812660.1 mRNA upstream 94865 21314294 ~ 21348934 (-) False slc43a1a
TU143328 other downstream 65795 21127838 ~ 21130970 (-) True G106728
TU142968 other downstream 962841 20230908 ~ 20233924 (-) True G106443
TU142874 other downstream 1215632 19972415 ~ 19981133 (-) False fgf18a
TU142773 other downstream 1714207 19480018 ~ 19482558 (-) False tlr1
TU142573 other downstream 1977621 19215989 ~ 19219144 (-) False LOC120566717
TU143775 other upstream 570824 21790253 ~ 21790725 (-) True G106988
TU143804 other upstream 900256 22119685 ~ 22120067 (-) True G107015
TU143931 other upstream 1471731 22691160 ~ 22692831 (-) True G107117
TU144086 other upstream 1771558 22990987 ~ 22993229 (-) True G107235
TU144154 other upstream 1910280 23129709 ~ 23134785 (-) True G107284

Expression Profile