RNA id: XM_039813204.1


Basic Information

Item Value
RNA id XM_039813204.1
length 1377
RNA type mRNA
GC content 0.52
exon number 5
gene id LOC120566642
representative True

Chromosome Information

Item Value
chromosome id NC_053121.1
NCBI id CM020918.1
chromosome length 40300294
location 27799826 ~ 27802336 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GTTAGTGCAGTGAAGACAGCTTCCTGAGCCAGGGGTTCGAGATGATTTCTTCATTGTGGTCGTTGGGGGCACTCTGCTGTCTCATGTTGCTCCCAGCCCTGTTGGAGGCTAAATCTTTGTTAAACGCCATCAAGCAGGAAGAGATGGTACCCGTCGGTGATGTTGGTATTGACTCAGAGAAAGCAAATGGCTTTCTGAGTCACTCCAGACCGAAGCGTAACGTGGACCCCAGGTGGTACAGAGGAAACCCAGACTTCCAGGCTTACTACCGCTACTACAGCAGCATCGGACACACTGAGGGGCTCTATGAGATCGACAAGCTGCGGATGCTCTATCAGCAAATGAGGTACCTGGAGCACACCTATGGCCCCGACGCGTCCTATTTCCAGAGCAAACTGGGAGTGCCGATGATCATGTGTGACCCAGCTACAGACAAGAATTGCAAAGtcgctcttcctcctcctcccccaatGAAAGGGGGCCCAAAGCCCACAGAGCCCCCAGTAACCcctgctcctctccctcctgCTCCAGCCATTTCCCAAGCTGATGTACTCTACCTCTGCAACAAGAAAGACCCCCTCTGTAAGCCCCACATCGTCTACCTGCCCACCGGCTCCGTGCCTGTGCTCTGCGACCCCCGCTACCACCCCCACTGCACTCCCCAGAAAGTTCCTGCTCCAGTCGCAGTGCCCCAacctcctccccctccaccAAAGAAGTCCgccccacctccacctccacttGTCCTCGTCAAGAAGTCTCTCCCGGCCCCCATCCGCACCTTCAAGGGTATGGAGTACGACTGTGACCCCTACTGGGACCCCGACTGCCTGATTGACCACCCACCCAGGCCCATTAAGGGGAAGATCGTGGTCCCCCCGCCGCCACCACCACCCCCTCCTgtggaggaggaaaagaaagaggaaccAGTGGAGCAGCCAGCTCCCCCTGCTCCCATCGAGAAGAAAGTAGGCCTCTACCCATACCCTTACTACTACCCCCCCATGCCCTACAACCCCAGGGATGATCTGTATGACCCGGCCCGCTTCCAGTACCCACAGCCGGCTGCTGCTGCCGATGAGCCTGCAGAGTCAGGCCACAGTcagtaaaaacatccaggatgtgTTGGAAGAAAGgtgtttttactttaaaataaaacagactGATTGAAAACATCTAAGTtgaacattttcatattttgaGAGATTTGAACATCTTGCAAATGCGAATACATGGAATACAACCTGTACTAAAGCAATGAAAAGCTGCAGTATTTGTTTAAACCTTGTTACATTGATAAATAACATCACTGTcgataagtaaaaaaaaatcagttttcaGTCCACCCAAGCATGTAATGCAAATTATAAATTT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU145614 lncRNA downstream 13043 27786110 ~ 27786783 (-) False aurkb
TU145588 lncRNA downstream 26845 27772676 ~ 27772981 (-) True G108353
TU145587 lncRNA downstream 27755 27771851 ~ 27772071 (-) True G108352
TU145586 lncRNA downstream 41131 27757793 ~ 27758695 (-) True G108351
XR_005640565.1 lncRNA downstream 403795 27394324 ~ 27396031 (-) False LOC120567396
TU145629 lncRNA upstream 35232 27837568 ~ 27839107 (-) True LOC120567057
XR_005640513.1 lncRNA upstream 36002 27838338 ~ 27838921 (-) False LOC120567057
TU145664 lncRNA upstream 151143 27953479 ~ 27954107 (-) False LOC120566991
XR_005640501.1 lncRNA upstream 165728 27968064 ~ 27970362 (-) True LOC120566995
TU145677 lncRNA upstream 178714 27981050 ~ 27981447 (-) True G108422
XM_039813202.1 mRNA downstream 9615 27780132 ~ 27790211 (-) False aurkb
XM_039813201.1 mRNA downstream 9615 27786037 ~ 27790211 (-) True aurkb
XM_039813203.1 mRNA downstream 14345 27780132 ~ 27785481 (-) False aurkb
XM_039813905.1 mRNA downstream 29571 27756523 ~ 27770255 (-) False bod1l1
XM_039813904.1 mRNA downstream 29571 27756523 ~ 27770255 (-) True bod1l1
XM_039813205.1 mRNA upstream 1022 27803358 ~ 27814189 (-) True mcm7
XM_039813069.1 mRNA upstream 12949 27815285 ~ 27836229 (-) True LOC120566545
XM_039813848.1 mRNA upstream 49351 27851687 ~ 27865367 (-) False LOC120567058
XM_039813847.1 mRNA upstream 49351 27851687 ~ 27865366 (-) True LOC120567058
XM_039813751.1 mRNA upstream 106584 27908920 ~ 27910963 (-) True LOC120566982
unassigned_transcript_477 other downstream 20612 27779133 ~ 27779214 (-) True trnal-aag_2
TU145467 other downstream 537706 27258247 ~ 27262120 (-) False LOC120567151
TU145368 other downstream 733879 27065418 ~ 27065947 (-) True G108191
TU145357 other downstream 798815 26989264 ~ 27001011 (-) True G108181
TU145230 other downstream 1339119 26457995 ~ 26460707 (-) False rpl36a
TU145627 other upstream 35512 27837848 ~ 27839107 (-) False LOC120567057
TU145628 other upstream 35512 27837848 ~ 27839107 (-) False LOC120567057
TU145691 other upstream 219401 28021737 ~ 28023229 (-) True G108433
TU146164 other upstream 2858576 30660912 ~ 30661623 (-) True G108777
TU146169 other upstream 2867195 30669531 ~ 30670849 (-) True G108781

Expression Profile