RNA id: XM_039813232.1


Basic Information

Item Value
RNA id XM_039813232.1
length 1909
RNA type mRNA
GC content 0.47
exon number 2
gene id hs3st1
representative True

Chromosome Information

Item Value
chromosome id NC_053121.1
NCBI id CM020918.1
chromosome length 40300294
location 27478825 ~ 27481536 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

AGGGGGGAGTGGTCCTGCAGGCGTACTGTAGGCGTAGGCTTCAACAGCTGACACACAGACCGGGAGGACAGTCGGGCTCGGAAGCAGAGCTCAGAGGAGGCGCTCCGGTGAAGTTGTGACCCTGCGTCCGAGGCGAGTTTTGTGCGCTCGGAAGAGACCACGGAGACTGTCTAGAGCCGGAACATAAACCCGCAGTTTTGGAAGTACTGGTGCTGAGAACAGTGAGTTCAACGCTGCACGAAATGAAATCGAGTCGAGAGGATTATAGTTAGAAAGTTACTGCTCCTGGCAGAGAAGATacagttttttttgcttttcaatTGGACCATTGTGCTCAGGCAGCTGCTTTTTCAATGTGGGATACAGTTTTGGTGCTTTTGCCAGGCTGAAATCCTCCAGTGTCAGGACCTCCCTCATGGCAGCCGTGCTCCTCGGGCTGCTGCTTTTTGCAATGCAGTCTCCCCCCGTCCCCTCCAGGCCCATGGCTAACGAGGGGCCACCTTCCACCTCATCGCCCACCTACAACGACAAGACCACCAGCCACCCAAACGGGACCCTCCAACAGCTTCCTCAGATTATAATTATTGGCGTGAGGAAGGGGGGAACGCGGGCTCTGATAGAGATGCTCAGTCTGCACAGTGCAGTGGCGGCGGCTCAGAACGAGGTGCACTTCTTTGACTGGGAGAGCCACTTTCAGAAGGGCTTGCCTTGGTATCTCAGCCAGATGCCCTACGCCTTCCCCGACCAGCTGACGGTTGAGAAGACGCCGGCCTACTTCACCTCCAGCAAAGTCCCCAAACGCATTTATCAGATGAACACTGACATCAAACTGCTGCTCATCCTCAGAGACCCCACGGGGCGGGTGCTGTCGGACTACACCCAGGTCTTTTACAACCGCCTCCAGAAGCACAAGCGCTACCAGCCCATCGAGTCCGTTCTGGTGAAGGACGGCGAGATCAACCTGGGATACAAGGCTCTCAATCGCAGCCTGTACTATGTTCACATGCAGAACTGGCTGCAATACTTCCCACTGGAGAGCATTCACGTGGTGGACGGGGATGAGTTGATCAGGGACCCCTTCCCCGAGATGAAAAAGGTGGAAAGATTCTTAAAGCTGGAGCCCCAGATAAATGCTTCAAATTTTTACTTCAATAAAACTAAAGGATTCTACTGTTTGAGAGACCACGGGCGAGAACGGTGTTTACATGATTCAAAAGGCAGGGCTCACCCTCATGTGGCGCCTGCCATCCTGCAAAAACTCTACCAGTTCTTTCACGAACCCAACAAAAAGTTCTTTGAGCTGGTGGGCCGACCATTCAACTGGAAATGAGCGTCTGAGTCTCAGTAGATTGGCGTAGAGTTGCTTGGGGATAATCTGTTTTCCTCATTAACAATGTAGATTAAGAGACAAAGCTAATGTAAATTTAAACTCAATCTATTTTTGTACTAGTAGTCTACATTTGTTACAGGAGTATGATCGAGCCAAATGCAAGGGCAGACTAAAGTTCATGACATGCTTTGTTAGTGCATgtcttatttcttttcattgtCAAACATATGCATTTTACTGTCTTTTTGGACTGTTAAAAACAGTCACTACTGTTTAGCTAGATTGATCAAAAACTTATAATGACATTTAGACTGTGCCAGTTCATGTTTCACTTCATATAATATGGCATTATTAACGTCTAACTGCCTTTAGAACTCTAAAGGACCTGTACCTGCTGCTATGATTTTGTCACTTTCAGGCGTGAGCCGTTACTCAAATGTTTCTTTCATGTAAGATTTATGTATTTCAATTTTCTGCGCACATCATATATTTGTTGATCATCACGGTGTACtgtgaatagttttttttttcccaaaaggTGAAGAATTAATACCATAATAaagatatattttattttta

Function

GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0008146 sulfotransferase activity molecular_function

KEGG:

id description
K01024 HS3ST1; [heparan sulfate]-glucosamine 3-sulfotransferase 1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_005640565.1 lncRNA downstream 82794 27394324 ~ 27396031 (-) False LOC120567396
TU145500 lncRNA downstream 82842 27394158 ~ 27395983 (-) True LOC120567396
TU145476 lncRNA downstream 144751 27269370 ~ 27334074 (-) False atp8a1
TU145466 lncRNA downstream 225441 27252395 ~ 27253384 (-) False LOC120567151
TU145371 lncRNA downstream 387150 27091382 ~ 27091675 (-) True G108194
TU145586 lncRNA upstream 276257 27757793 ~ 27758695 (-) True G108351
TU145587 lncRNA upstream 290315 27771851 ~ 27772071 (-) True G108352
TU145588 lncRNA upstream 291140 27772676 ~ 27772981 (-) True G108353
TU145614 lncRNA upstream 304574 27786110 ~ 27786783 (-) False aurkb
TU145629 lncRNA upstream 356032 27837568 ~ 27839107 (-) True LOC120567057
XM_039812577.1 mRNA downstream 33778 27432341 ~ 27445047 (-) False LOC120566264
XM_039812576.1 mRNA downstream 33778 27432341 ~ 27445047 (-) True LOC120566264
XM_039812579.1 mRNA downstream 33779 27432341 ~ 27445046 (-) False LOC120566264
XM_039812901.1 mRNA downstream 58406 27410564 ~ 27420419 (-) True gsr
XM_039812900.1 mRNA downstream 58998 27410564 ~ 27419827 (-) False gsr
XM_039813234.1 mRNA upstream 223676 27705212 ~ 27735519 (-) True rab28
XM_039813236.1 mRNA upstream 223676 27705212 ~ 27735303 (-) False rab28
XM_039813237.1 mRNA upstream 223679 27705215 ~ 27735303 (-) False rab28
XM_039813235.1 mRNA upstream 223679 27705215 ~ 27735303 (-) False rab28
XM_039813233.1 mRNA upstream 259258 27740794 ~ 27744082 (-) True nkx3-2
TU145467 other downstream 216705 27258247 ~ 27262120 (-) False LOC120567151
TU145368 other downstream 412878 27065418 ~ 27065947 (-) True G108191
TU145357 other downstream 477814 26989264 ~ 27001011 (-) True G108181
TU145230 other downstream 1018118 26457995 ~ 26460707 (-) False rpl36a
TU145117 other downstream 2190739 25279603 ~ 25288086 (-) True G107989
unassigned_transcript_477 other upstream 297597 27779133 ~ 27779214 (-) True trnal-aag_2
TU145627 other upstream 356312 27837848 ~ 27839107 (-) False LOC120567057
TU145628 other upstream 356312 27837848 ~ 27839107 (-) False LOC120567057
TU145691 other upstream 540201 28021737 ~ 28023229 (-) True G108433
TU146164 other upstream 3179376 30660912 ~ 30661623 (-) True G108777

Expression Profile