RNA id: XM_039813239.1


Basic Information

Item Value
RNA id XM_039813239.1
length 1495
RNA type mRNA
GC content 0.54
exon number 12
gene id mapk9
representative False

Chromosome Information

Item Value
chromosome id NC_053121.1
NCBI id CM020918.1
chromosome length 40300294
location 18620133 ~ 18640808 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TCTGTGCTTGTTGTGGTGGCGTTCCCTTCCTCCGCGCTGCCGCTAGAGTTAGCTAGGAACTGGAGGAAGGTCTATCTGATCTGTCGTGACAGCCCGTTCTCCTAAACTTTTCCAAGTCTAGGTTGTGCCTGACAGACGGAGAGAGTGTTTTATCTGTGTTTTCGATGCATAGGAGTGTCCTGGGAGCGGCGAAGGGAGAAGACAGCGCTGGTGGTCCTGACTGTTCAGCAGGATGAGTGAGGCGGACGGCCAGTTTTACAGCGTTCAGGTGGGAGACTCCACCTTCACTGTACTCAAGCGCTACCAGCAGCTCCGCGCCATCGGCTCCGGGGCCCAGGGAATCGTCTGCTCTGCTATAGATACAGTCCTTGGTATACCAGTGGCAGTGAAAAAGCTGTGTCGGCCCTTCCAGAACCAGACCCATGCTAAGCGTGCCTACAGGGAGCTAGTGCTGCTCAAATGTGTCAATCACAAAAATATCATCCGTCTGATCAATGTGTTCACGCCTCAGAAGTCCTTGGAGGAATTCCAGGACCTGTATCTAGTGATGGAGTTGATGGATGCCAGCCTGTGCCAGGTGATCCACATGGACTTGGACCATGAGAGAATGTCCTATCTGCTCTACCAGATCCTCTGTGGCATCCGGCACCTGCACTCTGCTGGCATCATCCACAGGGACCTGAAGCCCAGTAACATTGTGGTGAAGTCAGATTGCACTCTAAAGATCTTGGATTTTGGCCTGGCTCGGACGGCCTGCACTAACTTCATGATGACCCCTTACGTGGTGACCAGATACTACCGCGCGCCAGAGGTCATACTGGGCATGAAGTATAAGGAGAATGTGGACATCTGGTCAGTGGGGTGCATCATGGGAGAGATGGTTAAGGGCAGCGTTATCTTCCAGGGCACCGACCACATCGACCAGTGGAATAAGGTGATCGAGGTTCTGGGCACACCCAGTCTGGAGTTTATGAACCGACTGATGGAGACCGTGAGGAACTATGTGATGAACAAGCCGCAGTATCCTGGCGTCAGCTTTGACCAGCTTTTCCCAGACTGGGCCTTTCCTTCTGACTCAGAACATGACAAACTGAAGACAGGTCAAGCACGGGACCTGCTGTCCAAAATGCTGGTCATCGATCCTGAGTGCCGCATCTCGGTAGAAGAAGCCCTGAATCACCCGTACATTCACGTGTGGTACGACCCTGGTGAGGCCGACGCGCCCCCTCCCCAGATTTCAGATAAGCAGCTGGAAGAGCGAGAGCACTCCATCGAGCAATGGAAAGAACTCATTTATGAAGAGGTGATTGATTGGGAAGAGAGGAACAAGAATGGACTGATGAAAGAAGACTGCTCAGATGTGGTGTCGGGTTCAGCCTCCCAGTCGTCTTCAGCCAACGACATCTCGTCCATGTCCACGGAGCACACCTTGGCCTCGGacacagacagcagcagcatcgACACGCTGACGGGACCGCTGGACGACATTCAGTGA

Function

GO:

id name namespace
GO:0000165 MAPK cascade biological_process
GO:0006468 protein phosphorylation biological_process
GO:0005524 ATP binding molecular_function
GO:0004707 MAP kinase activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU142304 lncRNA downstream 70439 18550110 ~ 18551684 (-) True G105967
TU142250 lncRNA downstream 307722 18285958 ~ 18314401 (-) False reep2
TU142139 lncRNA downstream 553667 18067449 ~ 18068456 (-) False LOC120566360
TU142128 lncRNA downstream 586366 18035382 ~ 18035757 (-) True G105835
TU142127 lncRNA downstream 586875 18033407 ~ 18035248 (-) True G105834
TU142426 lncRNA upstream 69234 18710042 ~ 18729032 (-) True G106057
TU142435 lncRNA upstream 357732 18998540 ~ 18999875 (-) True G106066
TU142437 lncRNA upstream 360964 19001772 ~ 19002114 (-) True G106068
TU142448 lncRNA upstream 376944 19017752 ~ 19018811 (-) False rgs14b
TU142450 lncRNA upstream 406456 19047264 ~ 19047863 (-) True G106073
XM_039813037.1 mRNA downstream 15408 18553669 ~ 18606715 (-) False LOC120566508
XM_039813036.1 mRNA downstream 47972 18553669 ~ 18574151 (-) True LOC120566508
XM_039813034.1 mRNA downstream 73408 18539401 ~ 18548715 (-) True clk4a
XM_039813035.1 mRNA downstream 77828 18539401 ~ 18544295 (-) False clk4a
XM_039814200.1 mRNA downstream 83671 18417659 ~ 18538452 (-) False col23a1a
XM_039813051.1 mRNA upstream 1684 18642492 ~ 18658559 (-) True gfpt2
XM_039813906.1 mRNA upstream 25256 18666064 ~ 18677366 (-) True LOC120567095
XM_039812569.1 mRNA upstream 37023 18677831 ~ 18679252 (-) True LOC120566256
XM_039812568.1 mRNA upstream 44240 18685048 ~ 18686432 (-) True LOC120566255
XM_039812570.1 mRNA upstream 48709 18689517 ~ 18691388 (-) False LOC120566257
TU142254 other downstream 316428 18303269 ~ 18305695 (-) False reep2
TU142092 other downstream 630252 17987258 ~ 17991871 (-) False sfxn1
TU142030 other downstream 826900 17783560 ~ 17795223 (-) False LOC120567448
XR_005640507.1 other downstream 1044312 17522141 ~ 17577811 (-) False nexmifb
TU141756 other downstream 1470555 17142146 ~ 17151568 (-) False tmsb1
TU142417 other upstream 46980 18687788 ~ 18691410 (-) True LOC120566257
TU142573 other upstream 575181 19215989 ~ 19219144 (-) False LOC120566717
TU142773 other upstream 839210 19480018 ~ 19482558 (-) False tlr1
TU142874 other upstream 1331607 19972415 ~ 19981133 (-) False fgf18a
TU142968 other upstream 1590100 20230908 ~ 20233924 (-) True G106443

Expression Profile