RNA id: XM_039813250.1


Basic Information

Item Value
RNA id XM_039813250.1
length 4137
RNA type mRNA
GC content 0.44
exon number 20
gene id cul4b
representative True

Chromosome Information

Item Value
chromosome id NC_053121.1
NCBI id CM020918.1
chromosome length 40300294
location 25202150 ~ 25214547 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

AGTACTTCCGGTGGGGTCACAGACTAGATTTTGAGAGCGAATTTTCCCCGTGTTGACCAACGGATGTTTTAGTATTATGTGACCCTATTTTGGCTGTAGATAGATTTCTTCTGTAAATAATTATCGGTAACGGCCGCTTCAGTTGACCACTTTTACTGAACAATTGTACAACGCGGGTTAGACACGAGAGGCAAAAGAGGAAGCAATAGCCAACCATCTTTCTTCTTCTGCCAGCAATAACAAGAAAGCGACAAGGCTAGGTTCAAGTGGAGCTGTTTAGTTTAACAATTTATTATCTGTTTTATACTGGATAAAAGACTTGGATAAAAAAACTCTCCGTACTAAGATAGATAACGTTAAAAGCTCTCGGACACTGAGATCATCTCAAGCCTGGAAGTTTCGGATCAAAAGACTGGCTGTTAAGAATTAGTATTCCCGTTTTTTCATGTTTCCAACAGGTTTATCTTCCCCTAATCCCCCACCACCGCCAACCCAGGAGGCTAGACCAGCGGCTACTGATGTCAAAAACGACAGCGGTAACATTACATCTCCGAAGAAGAGGAAAATAAACGGCTCAGAGAGGGAAGACACTTCTGACACGATCTCTTCCTCGCCTCCCAAGACCCTGaattcctcctcttcttcttcctcctcctcctccccctgctCCCCCACTTCGCTGCACATCCAGAAGAAGTTAAGGTTTGAGGATTCAGTGGATTTCATTGGACTGGATGTTAAAATGGCTGaggaggctgctgctgcttcgtGCTCTAATAACAAAAGCAAAGCCGTGTTCCTGCCCGGTGGCGTGGGACACCATGCAAACGGACTGACGAAGCCTGCAGGATCCGGCACCTTTTCGAACAGTAAACCCGGTGCTGCCAAGAAACTAGTCATCAAGAACTTCAAAGAAAAGCCCAAATTGCCAGAGAACTACACGCAGGAGACCTGGCAGAAGCTGAAGGAGGCAGTGGAGGCCATACAGAACAGCACTTCAATTAAGTACAATCTAGAGGAGCTCTATCAGGCTGTTGAGAACCTGTGCTCCCATAAGATATCTGCCAAACTTTACAAACAGCTGAGGGCCGTGTGTGAAGACCACATCAAGGCACAAATTGATCAATTCAGAGAGGATGCCCTGGACAGTGTGCTTTTCCTAAAGAAAATTGACAAATGCTGGCAAGATCACTGCAGACAAATGATCATGATTAGgagtatatttttgtttttggaccGCACCTATGTTTTACAAAATTCAATGCTGCCATCAATCTGGGACATGGGTCTGGAGCTGTTCAGGTTCTACATCATCAGTGATCTGAAGGTCCAGAGTAAAACTATCGACGGGATTCTGCTGCTCATTGAGAGGGAGCGAAACGGAGAGGCGATAGACCGCAGTCTACTGAGGAGCCTGCTGAGCATGCTCTCTGACCTGCAGATTTATCAGGACTCTTTTGAGCAACGCTTTTTGGAGGAAACTAATCGACTGTATGCTGCAGAGGGACAGAGGCTGATGCAGCAGAGAGAGgtCCCAGAATATCTCCATCATGTCAACAAGCGCTTAGAGGAGGAGGCTGACAGAGTCATCACATATCTGGACCAGAGCACACAAAAACCGCTCATTGCTACTGTGGAGAAGCAGTTGCTGGGTGAACATCTCACGGCTACTCTGCAAAAAGGGCTGACTCACCTGCTGGATGAGAACAGAATTCAGGATCTGTCTCTTCTCTATCAACTCTTCAGTCGAGTGCGAGGTGGCGTCCAGGTCCTCCTGCAGCACTGGATAGAGTACATAAAGGCTTTTGGAAGCACAATCGTAATCAATccagaaaaagacaaaacaatggTGCAAGAGTTGCTGGACTTCAAAGACAAGGTGGATCACGTCATCGACATATGCTTCATGAAGAACGAGAAGTTCGTCAACGCCATGAAGGAGGCTTTCGAAACATTCATCAACAAACGGCCAAATAAACCTGCAGAGCTCATAGCAAAACATGTGGATTCAAAGCTAAGGGCAGGAAACAAAGAAGCAACAGATGAAGAACTGGAGAAGATGCTGGATAAGATCATGATTATTTTTAGATTCATCTATGGAAAAGACGTTTTTGAGGCCTTTTATAAAAAGGATCTGGCCAAGAGGTTGCTGGTTGGAAAAAGCGCCTCTGTAGATGCTGAAAAATCGATGTTGTCAAAGCTGAAGCATGAATGTGGAGCAGCGTTCACTAGCAAACTGGAGGGGATGTTCAAGGATATGGAGCTTTCTAAAGACATCATGGTGCAGTTCAAACAGTATATGCAGTGCCAAAACATTCCTGGCAACATTGAGCTGACGGTGAACATCCTCACGATGGGTTACTGGCCAACCTATGTCCCGATGGAAGTGCACCTTCCTCCTGAGATGGTGCGACTGCAGGAGATCTTCAAGACCTTCTACCTGGGCAAACACAGTGGCAGGAAGCTGCAGTGGCAGTCAACACTCGGCCATTGTGTCTTAAAAGCTGAATATAAAGAGGGCAAGAAGGAGCTGCAGGTGTCACTTTTCCAAACACTTGTGCTACTGATGTTTAACGAAGGAGAGGAGTTCACCCTGGAGGAGATCAAACTGGCAACAGGAATAGAGGACAGTGAACTTCGCCGGACTCTGCAGTCACTTGCATGTGGAAAAGCGCGTGTCCTCACCAAAATCCCCAAAAGCAAAGATGTGGAGGACGGGGATAAGTTTTCTTGCAATGATGACTTCAAACACAAGCTCTTCAGGATCAAAATAAACCAGATCCAGATGAAAGAAACGGTGGAGGAGCAAGCCAGTACCACAGAAAGGGTGTTTCAGGATCGTCAGTATCAGATCGATGCTGCCATTGTGCGGATCATGAAGATGAGGAAGACTCTGAGCCATAATCTCTTGATGTCTGAAGTGTACAACCAGCTTAAATTCCCCGTCAAGCCTGCTGACTTGAAGAAGAGGATAGAGTCTCTTATTGACAGGGACTATATGGAGCGTGACAAGGAGAACCCCAACCAGTACAACTATGTGGcttaaagaaaggaaaaagtgACTGAGAAAAAAGAGATGCAGATGGTCCATTCAGGCTGAGGTGATCGGTCTCTAAATCTTTTGCTCCAGTGGATGTTAACCATAATAATCAACCCAGCGACCGACAAGTGAATGGATACTGCTCCACAGGATTTTTGTCAAGGGTCTTGTGATCCTGTGGACTGCATGCCCATTGAAAAGAGAATATTGTCCATATTTCTCAGTGCCTCCTGAGAAAGATGGGCTACCGTGGACAGACAAAGAAGACACACAGATGTTGTTCcgtttgctcttttttttttaatggagaggaaaaatatttattttcaaactTAGATTCTTCTTTGTCCATAGTTTGAATCAATATGCTCTTTGTTATCAAGtcactttttgtctttttgttcacTCAGTATCCCAAGCAAATGCTGACACACTTAACAATGCTCTAAATGTATCTTACGTTGGAGAGAAAAAGGATCAAAAAATTAAACCAATGCTTGTTTCTTTAGTCAGTGTCAAATATGGGACTATTAGACTAACATTTCATAGTAGAGAAATGACAATTTGGGGACTATCTGTGTCAAATGTGTGATCCTGCAGCAAGGTTTTACAATTTTTAAGACCATGTAGCCATCTGATAAAGCTGTGATTATGAACACACAAAGCTTCAAAGCAGAGTTTGTGCCAAAAAAGGAGCACTTCTTTTGTTATAGGGTGTATTCAAGCTGCTAAAACACTTCGGTTGTACAAAAATATGCATTTAAGTTTCTCGTTTGTTCTGTCTTTGTACGTTTTTGTACATCAcaaaagtgacattttaaatGATCTCATCTGACAGTCAACTGCTTTTTAGGTTTTTGTTAACCTTTTAGAAAGTATACTGAaagcacaatgacatcagagCCCATCCTACCCAGGTGTCATACCACATACACactatattttttgtatgtctCCCTGTGGGGCTTGCTGAAAACTGGGGAGAATGGGAGTGGATTGCCTCAACACATGAGGAAAAATATGATTGATTAGACATGCCCTTGTTTGTATGAGTCTGTTAGATTTATTGCTTCAGATTAAAACAACTTTCAATTggg

Function

GO:

id name namespace
GO:0006511 ubiquitin-dependent protein catabolic process biological_process
GO:0031461 cullin-RING ubiquitin ligase complex cellular_component
GO:0031625 ubiquitin protein ligase binding molecular_function

KEGG:

id description
K10609 CUL4; cullin 4

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_005640455.1 lncRNA upstream 94528 25106440 ~ 25107622 (+) True LOC120566737
TU144867 lncRNA upstream 254814 24947121 ~ 24947336 (+) True G107821
TU144866 lncRNA upstream 255208 24946738 ~ 24946942 (+) True G107820
TU144865 lncRNA upstream 256446 24945327 ~ 24945704 (+) True G107819
TU144864 lncRNA upstream 257610 24943550 ~ 24944540 (+) True G107818
TU145067 lncRNA downstream 37578 25252125 ~ 25252468 (+) True G107958
TU145085 lncRNA downstream 56992 25271539 ~ 25273631 (+) True G107972
TU145084 lncRNA downstream 65063 25279610 ~ 25282207 (+) False rpl39
TU145103 lncRNA downstream 73572 25288119 ~ 25290199 (+) True G107981
TU145107 lncRNA downstream 166166 25380713 ~ 25394758 (+) True G107985
XM_039813247.1 mRNA upstream 4954 25194743 ~ 25197196 (+) True c1galt1c1
XM_039814042.1 mRNA upstream 15671 25180988 ~ 25186479 (+) True clic2
XM_039813356.1 mRNA upstream 105127 25073643 ~ 25097023 (+) False apln
XM_039813959.1 mRNA upstream 221350 24953134 ~ 24980800 (+) True zdhhc9
XM_039813958.1 mRNA upstream 224869 24948008 ~ 24977281 (+) False zdhhc9
XM_039813227.1 mRNA downstream 573 25215120 ~ 25231503 (+) False lamp2
XM_039813226.1 mRNA downstream 573 25215120 ~ 25230326 (+) False lamp2
XM_039813228.1 mRNA downstream 573 25215120 ~ 25228920 (+) True lamp2
XM_039813588.1 mRNA downstream 27020 25241567 ~ 25251643 (+) True tmem255a
XM_039813589.1 mRNA downstream 27020 25241567 ~ 25251643 (+) False tmem255a
TU144869 other upstream 105148 25073213 ~ 25097002 (+) False apln
XR_005640591.1 other downstream 66401 25280948 ~ 25281080 (+) True LOC120567498
XR_005640445.1 other downstream 77060 25291607 ~ 25307926 (+) False sept6
unassigned_transcript_476 other downstream 106678 25321225 ~ 25321296 (+) True trnae-uuc_61
TU145245 other downstream 1246773 26461320 ~ 26467814 (+) False btk
TU145248 other downstream 1262275 26476822 ~ 26479149 (+) False timm8a

Expression Profile