RNA id: XM_039813251.1


Basic Information

Item Value
RNA id XM_039813251.1
length 1635
RNA type mRNA
GC content 0.49
exon number 2
gene id sowahd
representative True

Chromosome Information

Item Value
chromosome id NC_053121.1
NCBI id CM020918.1
chromosome length 40300294
location 25282801 ~ 25284565 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TGAGATTAGAATGAACTTTGTTTCAGTTCCTCTTTAGAGGAAATGAGGAAGATAGCGGCTTATATCTATAGCCAACTATTTGGTCGACTACCTTAAAATAACTATCAGTTTGCCTATAACGTTTGACAGGGACTGAAGTGCTTAATGGTCGCTACAACTGCAACCTCGGTCACGGATTACGTGAGTCGGTGTGCGCTTGTTAGGACAGAACAGGACACTGAATGAGTCGAGTGGAGGGAAACCGTCCCGAGTTTATAATTTGACATTAATATCGTCGGGGTGTTGTCTAAATAAAGGAAGTAGCGTTGGACTCAGCGTGCAGGGAGCCAAGCAGCATGTATGAGGGCAGATCGGATGATGATGGATGTGACTCCACTGGATCTGAATCAGCTGTCAGTAATGCCACCCACGGCAGCGGGATGTCCAGACAGGGCACCGTTGTGGAGCGACTCTCTCGGTATGTCTTGCCCAGCGCTTTCCAGCGTAGGTCGAGGCTGCAGAGGCAGATGGAAGTCACTGACAGCTCGGCACCGGGAGGAGTTCAGAGGGAGGCTCCGGAGAGAGGCTCGCTCACACCCGCTATGCGTAAAAATTACCTGAAAGAGTTGCTTTTAagcaatcagacacacagcGGGCTTAGTAGCGTACTGTCACAAACGCACAGCGTGTCCTCCGAGCAGGACGAAGGCTGGGCTTTGTATCCGATGGAGCACGCGTGGATGCTGTCTGCAGTGGAGGGCAACTATGAAACCATACTGGAGTTTATCTCCGAGGACCCCTATCTGATAACCAGGAAGGATTTCATCAGCGGGTACTCGGTCCTGCACTGGCTGGCCAAGAGAGGACAGGACGAGACTCTGCTCAAACTTTTAAAATACGCAGAAAGTGCGGGGATCCCGGTGAATGTGAACGTGCGGGGCAGCGGCGGGCTCACCCCGCTGCATGTCGCCAGCATGCACAGGCAGTACATGGTCATTAAGCTGCTGGTCGGAGCGTTCAGTGCCAACGTAGATGCCATGGACTACAATGGAAAGAGAGCCTGGCAGTATCTGGAGGGAGACGCCCCGCTGGAGATGAAGGAGCTGCTGGGGACCTGGGATGAAGAGCACGGATATGGATGTGCgcaaaatgtcaacaaaaacgTCAACAACAACAGCGCCGGCGCAATGAACATGACCGCATATGATGAGGTCGATCATGGAGAGACAGATCACGTGAACTCATTTGACCCGACTAAGACAGAGAGCAGCTGGGGGTTTGGGTCTTTAAGAAAGCTGCTACCCtcgttttcatttcttgggaaCAAACGCTGAGTGTGGTTATGACACACGCCTCCAAATATGTGCGTCATTTCACAGTCAGTTCACTGTTTTAGTGGTTCCTAACGTTATGTGGGGCAAAAAAATCTTCTTACCAAGTCATTTCTACTTATAGAGTTCTTACAGTTCTTTAAACAATTGTAATTTAAATCATAACGTATTCTTCATTATAGAGCAACTCCCATTGCTCTTTCAAGACAAACCCTTCTAGTGAATTCTTCAGAACGAGTTAATGTAAACAAATTCCTGCAAAACCCTGTTTTACAAGAACATTTAGGATTGAATAAGCAGAAATAAACAGTGATGATCAAAGGGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU145077 lncRNA downstream 17939 25263179 ~ 25264862 (-) False ndufa1
TU145020 lncRNA downstream 96323 25180938 ~ 25186478 (-) True G107923
TU145024 lncRNA downstream 96323 25180938 ~ 25186478 (-) False G107923
TU144993 lncRNA downstream 208969 25073181 ~ 25073832 (-) True G107907
TU144988 lncRNA downstream 302004 24977124 ~ 24980797 (-) True G107903
TU145122 lncRNA upstream 7052 25291617 ~ 25297266 (-) True G107992
TU145172 lncRNA upstream 363969 25648534 ~ 25648780 (-) True G108031
TU145177 lncRNA upstream 395527 25680092 ~ 25680437 (-) True G108036
TU145181 lncRNA upstream 490017 25774582 ~ 25774823 (-) True G108040
TU145209 lncRNA upstream 552765 25837330 ~ 25839330 (-) False diaph2
XM_039813625.1 mRNA downstream 17937 25263172 ~ 25264864 (-) True ndufa1
XM_039813585.1 mRNA downstream 25169 25252765 ~ 25257632 (-) True zbtb33
XM_039813587.1 mRNA downstream 25649 25252765 ~ 25257152 (-) False zbtb33
XM_039813586.1 mRNA downstream 25689 25252765 ~ 25257112 (-) False zbtb33
XM_039814350.1 mRNA downstream 44187 25233186 ~ 25238614 (-) True atp1b4
XM_039813252.1 mRNA upstream 140 25284705 ~ 25290134 (-) True pttg1
XM_039813268.1 mRNA upstream 31733 25316298 ~ 25320522 (-) True ube2a
XM_039813267.1 mRNA upstream 81605 25366170 ~ 25432527 (-) True tnmd
XM_039812941.1 mRNA upstream 552765 25837330 ~ 26258199 (-) True diaph2
XM_039813376.1 mRNA upstream 1173437 26458002 ~ 26460732 (-) True rpl36a
TU145115 other downstream 602 25279603 ~ 25282199 (-) False G107989
unassigned_transcript_475 other downstream 420617 24862112 ~ 24862184 (-) False trnav-uac_15
TU144931 other downstream 703702 24573441 ~ 24579099 (-) True G107864
XR_005640439.1 other downstream 1390500 23886824 ~ 23892301 (-) False rab41
unassigned_transcript_474 other downstream 1908793 23373936 ~ 23374008 (-) True trnaf-gaa_66
TU145230 other upstream 1173430 26457995 ~ 26460707 (-) False rpl36a
TU145357 other upstream 1704699 26989264 ~ 27001011 (-) True G108181
TU145368 other upstream 1780853 27065418 ~ 27065947 (-) True G108191
TU145467 other upstream 1973682 27258247 ~ 27262120 (-) False LOC120567151
unassigned_transcript_477 other upstream 2494568 27779133 ~ 27779214 (-) True trnal-aag_2

Expression Profile