RNA id: XR_005640445.1


Basic Information

Item Value
RNA id XR_005640445.1
length 2671
RNA type transcript
GC content 0.44
exon number 12
gene id sept6
representative False

Chromosome Information

Item Value
chromosome id NC_053121.1
NCBI id CM020918.1
chromosome length 40300294
location 25291607 ~ 25310218 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

ATGGCGTCAACCGAGATAGCAAGGCAAGCGGGTGAAGGTGCTCGTGCTGTCCCTCTGGCAGGCCATGTCGGCTTCGACAGCATGCCTGACCAGCTGGTCAACAAGTCTGTCAACCACGGATTCTGCTTCAACATCCTCTGTGTTGGCGAGACAGGTCTGGGGAAGTCCACCCTCATGGACACGTTGTTCAACACCAAGTTCGAGGGCGAGCCCACCCAGCACAACCAGCCAGGAGTCACGCTCAAGTCCAACACCTATGAGCTCCAGGAGAGTAACGTGCGCCTTAAACTCACCGTCGTCAACACCGTGGGCTTCGGAGACCAGATCAATAAAGAAGACAGCTACAAGTCTATCGTGGAGTTCATTGATGCCCAGTTTGAAGCTTATCTACAAGAGGAGCTGAAAATCAAGCGCACGCTACACAGTTACCACGACACCCGCATCCACGCATGCCTCTATTTCATCGCTCCCACAGGACACTCGCTCAAATCCCTGGACTTGGTTACCATGAAGAAACTTGACAGCAAGGTCAATATTATTCCAATCGTTGCCAAGTCGGACGCCATCTCCAAGAGCGAGCTGGCCAAgttcaaaatcaaaatcaccAGTGAGCTGGTCAGCAACGGGGTGCAGATCTATCAGTTCCCCACTGACGACGAGTCTGTGGCAGAGATCAACTCCACCATGAATAGTCATTTGCCATTTGCCGTGGTGGGGAGCACAGAGGAAGTGAAGATTGGGAACAAGATGGTGAAGGCCCGGCAGTACCCCTGGGGGACGGTGCAGGttgaaaatgagaatcacTGTGACTTCGTCAAGCTGCGAGAAATGCTGATCAGAGTGAACATGGAGGACCTGCGAGAGCAGACTCACACGCGTCATTATGAGCTCTATCGCCGCTGCAAACTGGAGGAGATGGGCTTTAAAGACACAGACCCTGACAGCAAGCCCTTCAGTCTTCAGGAAACATATGAAGCTAAGAGGAACGAGTTCATGGGTGAGCtgcagaagaaagaagaagaaatgaggCAAATGTTTGTCCAAAGAGTCAAAGAGAAGGAGGCCGAGCTCaaagaagcagagaaagagCTGCATGAGAAGTTTGACCGTCTGAAGAAGCTCCACCAGGATGAGAAAAAGAAACTGGAGGACAAGAAGAAGTCCCTGGACGACGAGCTCAACATGTTCAAACAGAAAAAGACTGCTGCAGAGCTTTTGCAGAACCAAGCCCAGCAGGCAGGGGGCTCCACCACACTCAAGAGGgacaaagagaggaaaaaCTGATGTGATGCCGTGCCTGTTAGAAAAGGAAGAAGACATTTGCACTGAaagTTAACTCCTCCCACATTTGCTGCATGCTGCATGGGGCATCTTTTCTGCTTAGGATTCCTGTAGAAAAAGTGCTTCCTTGTGGCCATCCTGCTGTGAATGAGTTTCCACCCCATCATCCTTTTACAGTACCCCATCCCCACCCTCACCCAACCCCCATAATTCAACCCTCCACAAGCCCCCCTGCTCTCTGGAAGATGCTGGGCATTGCTGTCAGTTtgacatcacttttttttttgttttcttttgctgaATGATGCTTGTATGTTATATGGGTTGTACAAGCAATTATTCAGCTTGCCTTTTTATACAAATTTACAAATTAATGCATTCCACGTTTGTTTTATATTAAGTGATTAATTGCATGATGGAGTGagcttttttaaaatattaacatACATGACTACTGTTGTGATGGGCAGAAATGTGTTGAGGGTAAAGTGAAACATGCATCAGATGCTGGCACCTGAGTATGCATGTGTTCAAAGATCTGCAGTAGATTACAGAGAAGAAAGAATTAAGATAGTTGAGGACTAATGTGAGGATGGATTAAGTTAATGATCTACTGTATCTTCAGATTAAAGGACAGTGATGAATACATTGCGTTTCCTGTGACCGCTTCACAATAAAGGCCACCCTGTGTTTCGCCAGTTGAACACTTTTAAAGTGAAGCCGCAGCAGTGGGAAAGTAGCTGTAACTTAATACAGCTCTGATCCAGCTGTAAACAGTGAAACTGATATCAATATGATAAAATTACAGTAATGCTGGattacatgcatgcatgcatcttTTCCTGCTGAGTGCGTGTATCAACATTGGGAATGGCAGACCCCGCCACTAACAATGTAGACTATAATTACAGAATGTAAAAACAGTTAATGACCGTTGCAGACTATATATAATATCAACAAGGGGATTTGATTTCATGATATTCACTGATTATTATCTCAACCATATAGGCTTCCAATAATAATTGAATTTGAGACTTGTTTTTGGTATTTATGTCCCTTTGCTGATGCTGTTTCACTTTAGCCAGATGCATGAGTAGTTGTTAGCCTAATCTCTTTGCCACTTCTCCCATACCTCATTCATTGTCATGCGTAATGTGCATACTTGTATTAGCTTTCacatttgcactttttttttatacacaaatgtgatgttttttaagtacatattaatgTCAGTGCAATTgtaactttcttttttattttatttactatcAAGGCACATTTGAAAGTAATCATGATGTCCTGCAGGGACCCGTGTTTGTATCAGTGttacacataaaataaatattctctcaaaagaaaataaaggccAATTTTTCACCAAATATTA

Function

GO:

id name namespace
GO:0007049 cell cycle biological_process
GO:0031105 septin complex cellular_component
GO:0005525 GTP binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU145103 lncRNA upstream 1408 25288119 ~ 25290199 (+) True G107981
TU145084 lncRNA upstream 9400 25279610 ~ 25282207 (+) False rpl39
TU145085 lncRNA upstream 17976 25271539 ~ 25273631 (+) True G107972
TU145067 lncRNA upstream 39139 25252125 ~ 25252468 (+) True G107958
XR_005640455.1 lncRNA upstream 183985 25106440 ~ 25107622 (+) True LOC120566737
TU145107 lncRNA downstream 72787 25380713 ~ 25394758 (+) True G107985
TU145111 lncRNA downstream 78542 25386468 ~ 25387635 (+) True G107988
TU145158 lncRNA downstream 190690 25498616 ~ 25498866 (+) True G108020
TU145171 lncRNA downstream 340608 25648534 ~ 25648802 (+) True G108030
XR_005640378.1 lncRNA downstream 342789 25650715 ~ 25652662 (+) True LOC120566339
XM_039813253.1 mRNA upstream 9410 25279568 ~ 25282197 (+) True rpl39
XM_039813623.1 mRNA upstream 22377 25265515 ~ 25269230 (+) True upf3b
XM_039813624.1 mRNA upstream 28921 25258629 ~ 25262686 (+) True LOC120566922
XM_039813592.1 mRNA upstream 39964 25241567 ~ 25251643 (+) False tmem255a
XM_039813261.1 mRNA downstream 3113 25311039 ~ 25315431 (+) True nkrf
XM_039813263.1 mRNA downstream 13601 25321527 ~ 25363249 (+) True elf1
XM_039813262.1 mRNA downstream 24748 25332674 ~ 25363249 (+) False elf1
XM_039813266.1 mRNA downstream 24748 25332674 ~ 25363249 (+) False elf1
XM_039813264.1 mRNA downstream 25243 25333169 ~ 25363249 (+) False elf1
XR_005640591.1 other upstream 10527 25280948 ~ 25281080 (+) True LOC120567498
TU144869 other upstream 194605 25073213 ~ 25097002 (+) False apln
unassigned_transcript_476 other downstream 13299 25321225 ~ 25321296 (+) True trnae-uuc_61
TU145245 other downstream 1153394 26461320 ~ 26467814 (+) False btk
TU145248 other downstream 1168896 26476822 ~ 26479149 (+) False timm8a
XR_005640585.1 other downstream 1832410 27140336 ~ 27140454 (+) True LOC120567492
TU145443 other downstream 2082484 27390410 ~ 27393621 (+) True grxcr1a

Expression Profile