RNA id: XM_039813286.1


Basic Information

Item Value
RNA id XM_039813286.1
length 680
RNA type mRNA
GC content 0.41
exon number 5
gene id LOC120566697
representative True

Chromosome Information

Item Value
chromosome id NC_053121.1
NCBI id CM020918.1
chromosome length 40300294
location 21619863 ~ 21621608 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GTTCACTTTCACATTCAGACGAGAGATTTTTTTTAGCTCTGAAGACATTTAGCCAGCAATTCATCAGATCAACTGCTCACTGCTCACACTGCAGACATGAAGTTTGTGATCCTGTTTGTTCTTTTGAGTGGGGCTTTTGCTGCCCCATTCATGAAGGAAGAGCAGGCAAAGCGATTCATCAGGCTGAAGAGACAGTCGGGATACTGGGATCCGCACCACTCTCAGAACCAGTGGGGTTACACCATTCAGGAACAGGCAAACGAGTACTGGACAGCACTACGAACAGATGCACAGTACTACATGGACATGAGTAACATGATGTTTGACCGCTCTGTGGCTACGGAAAACAACAGGCTGTATATGGAGATGCTGCGCCAAGCACGAGCTCACCTGGACAGTCAGACGGATCAACacagataaataataaaaagaggaaaattAAGGAGAGAAGCAATCCTGTTGTAGTCAAACATATTACAGTGCTTCCTGGTGGTTAAAGCTAAAACATTTACCCTAATGTAATTTAGGAATACATTCAacatattacatacattacattggATCTGTATAAAGTGGacatcagagtttaaaatgGTTATGGTTAAAAGGGTGCATAAGATGATTTTTGTTGGCAACAAATAATAAcatgttaaagggatacgccaccgtttgttgaaata

Function

GO:

id name namespace
GO:0005581 collagen trimer cellular_component
GO:0005201 extracellular matrix structural constituent molecular_function

KEGG:

id description
ko04151 PI3K-Akt signaling pathway
ko04512 ECM-receptor interaction
ko04510 Focal adhesion
ko04974 Protein digestion and absorption
ko05165 Human papillomavirus infection

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU143545 lncRNA downstream 129042 21490056 ~ 21490821 (-) True G106872
TU143511 lncRNA downstream 173137 21443397 ~ 21446726 (-) True G106852
TU143512 lncRNA downstream 173137 21443397 ~ 21446726 (-) False G106852
TU143506 lncRNA downstream 176774 21440824 ~ 21443089 (-) True G106848
TU143476 lncRNA downstream 218680 21394462 ~ 21401183 (-) True G106825
TU143666 lncRNA upstream 79341 21700949 ~ 21725692 (-) True G106959
TU143776 lncRNA upstream 170197 21791805 ~ 21792629 (-) True G106989
TU143777 lncRNA upstream 174203 21795811 ~ 21796361 (-) True G106990
TU143778 lncRNA upstream 176615 21798223 ~ 21800003 (-) True G106991
XR_005640545.1 lncRNA upstream 232800 21854408 ~ 21857861 (-) True LOC120567355
XM_039813062.1 mRNA downstream 109860 21507069 ~ 21510003 (-) True LOC120566537
XM_039812765.1 mRNA downstream 119223 21494894 ~ 21500640 (-) True LOC120566376
XM_039812766.1 mRNA downstream 119471 21494894 ~ 21500392 (-) False LOC120566376
XM_039813288.1 mRNA downstream 181700 21429494 ~ 21438163 (-) False tbc1d10c
XM_039813287.1 mRNA downstream 181700 21429494 ~ 21438163 (-) True tbc1d10c
XM_039814152.1 mRNA upstream 71079 21692687 ~ 21697083 (-) False si:ch211-175m2.5
XM_039814151.1 mRNA upstream 71079 21692687 ~ 21697064 (-) True si:ch211-175m2.5
XM_039813572.1 mRNA upstream 263164 21884772 ~ 22015753 (-) False pcdh11
XM_039813571.1 mRNA upstream 263164 21884772 ~ 22015753 (-) True pcdh11
XM_039813573.1 mRNA upstream 372205 21993813 ~ 22015750 (-) False pcdh11
TU143328 other downstream 488893 21127838 ~ 21130970 (-) True G106728
TU142968 other downstream 1385939 20230908 ~ 20233924 (-) True G106443
TU142874 other downstream 1638730 19972415 ~ 19981133 (-) False fgf18a
TU142773 other downstream 2137305 19480018 ~ 19482558 (-) False tlr1
TU142573 other downstream 2400719 19215989 ~ 19219144 (-) False LOC120566717
TU143775 other upstream 168645 21790253 ~ 21790725 (-) True G106988
TU143804 other upstream 498077 22119685 ~ 22120067 (-) True G107015
TU143931 other upstream 1069552 22691160 ~ 22692831 (-) True G107117
TU144086 other upstream 1369379 22990987 ~ 22993229 (-) True G107235
TU144154 other upstream 1508101 23129709 ~ 23134785 (-) True G107284

Expression Profile