RNA id: XM_039813287.1


Basic Information

Item Value
RNA id XM_039813287.1
length 3949
RNA type mRNA
GC content 0.49
exon number 10
gene id tbc1d10c
representative True

Chromosome Information

Item Value
chromosome id NC_053121.1
NCBI id CM020918.1
chromosome length 40300294
location 21429494 ~ 21438163 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

gagagcgagagcgagagagagagagagagagagagaggaagctaGTCTTCCTCATCACCGAAGGATCGTGCACTTCACCTCTTCAACAACCGAGTGATCAAACGGAAATGTAAAAGTAAGATGTTAAGTCCAACGAGTCCAGCCCAGAAGAACCTCAGTGAAGAGGACAGCTCTGGATCTGATGCAGGGTCAGAGGTTGGTCTGGAACCTGAGACAGACCGCTTTGGCTTCATTCTGACAAATGGATCCACAGCTGGGAGTGTGGGTCCAGCCCCTGAGTTGGTCAGGCAGAGGGAGACCAAGTGGATAAATATCATTAGCCAATGGGATCGCATCTTGTTGAAGAAGACCAGCAAGGTCAAAGTGCAGTGTCAGAAAGGCATCCCAGCCTCACTCAGAGCAAAGTGCTGGCCTCTGCTGTGTGGTGCTACTGACAAGATGAAACTAAATGAAAACCTCTACAAGTCTCTGGACTCGCAGCCCGCTCTGCAGAGCTGGGTGGATGTGATCGAGAGAGACCTGGACCGACAGTTCCCTTTCCATGAAATGTTCCTTTCCAAGGATGGACATGGgcaGCGTGGTTTGTTCCGGGTGTTGAAAGCCTACACTCAGTACCAACCAGAAGAAGGTTACTGCCAGGCACAGGGGCCCGTGGCTGCAGTGCTGCTGATGAACATGCCTGCTGAGGAGGCCTTCTGGTGTCTGGTGCAGATTAGTGAGCAGTACCTGCCTGGATACTATAGCCCTCTGCTGGAGGGAGTCCTGTTTGATGCGGCTATGCTGACCTGGGTCTTGAAAAGGACATGTCCGTCTGCACACAAACACCTGCAGCACCACGGAGTGGAGCCCCTCATGTTCGCCACTGACTGGCTGATGTGTCTCTTCACACGTCACCTGCCCTTCAACACATTGCTCCGAGTCTGGGACCTCTTTTTCTGCTATGGAGTGCGGGTGCTGCTGCAGGTGGCGGTGGTGCTGGTGCGTCGGGTGCTGGGCCGAGCCGAGCAGAGGAAGCAGTGTCAGGGACAAATGGAGACTCTGGAGAGGCTGAGGGGCGTCAGGGAGGAGGTCCAAGAGGAAGACGACTCCTTCATAGCAGAGGTGTGCTCGGTGCAGCTGTCAGCCAGAGATCTGGAGAAGCATACTGAGAAGGAGTTAGAAAAGTGGAGGAAAGACAGACCCTCATCCACCTTTGACCCCAGAGGTCGCTGCCAGGGATACCGGATGGCATGGGCGAAGGCTCGACAGAACGAGGAAGAGCGGGACAGGAAAGCAAGAGAGAAGGGGAACCTGTCCATCCCTCTTGCTCGCTCGGCCTCCACTCTCTCGctgtctccctcccttcttcaCAAGAGGTGGAGGAAAGGGGGAAAGGCCAACACACGCGAATGGGAAGGCAACAGCAGAGTTGTGAGGCATCTATCAATGGGAGCAAAGGAGGACTTGAGGAACTGGGCCGAGATAAATTTCAAACAGGTGCAGGGCGTtcaggaggaggaagacgtAGTTTTTGAGGAACATAAGAAACAGAGTGAGCCGAAATTCACAGAACAAACTGAACAGAATGAACTTTTAGAAGAACCTAAAAAGATGGAAATCCAAAACATGCCAACAGAGCATGTAGAAGAAACAGTCGTCGTAAAAGAACAGATTGAACAAGTAGAAACAAGAATCACTGTAAAGGAGGAACCGCAACTcaaagagacagaggaaagcAAAGTGCTTTCAAACCAGACCGAAGAAACAAATGTTGAGACAGAACTAATCAAAGATCCAGCCGAAGATCAGACTGTTGAAAATATTCTTCAGCCTACTGAACACAAACAGGGAGAGGAGCTGGACTCTTACAGTCAGTCACAAGTTCAGGAACAGAGTCACGAAAGCAAGCACCTGGAAATTGAGGTAAAAGACGCaaaagaagagacagaaaaacaagtGGAAGAAAGTGAACATACTGCTGCTGTGGAGGGAAATCAGACTGAGCTACATAAAGATGCCTATGCAGATGAAAACAAAGAGGTGGAGACACAAGATAGTGTATACTCAAGTGAGGAACATATGATTCAGGCTGACATGAAACCAGAAGAGAGCACAGAAACTGAAAATGTGCAACAGACGCAGGTGGACACAGTGACAAGCCCAGGCTCAGAGACAGACATTAAAGTCGAAGCTCCAACTGTCAAAGATCCtacagcagagacagagacacaacagcAACAGCGAGAAGTgatcacagagacagacagaagccCACAGAAAGAtacatttgaagaaaaatacCACAGCACTGAGTCATTAGCAGGAACAGACATGAAAGAAGAGTCCCACACccaaacagagacagaaactgATGTACTGGCACAGACTCAAGAACAGGCAGAGGAAAATGCAGCCACACATGAAGTGGAAGCTGAAATAGTACACACAGATTCAGAACAACACATAAATTCAAAGACAGAATCAGAAACATTAATAATGTGTTTACCTGAATGCATCCAACCAAAAGACGGCACTGGCTTAGTAGCTGATTCAGAGACTGAAGCAGAGATACTAGTTGCAAACGACATAGCGAGGGAGTCACATGAAGAATTTGAGAAAGAGTGTGATGCAGTAGCATCTGAACCCACacaggaggaagaagaaagaaCTTTGACTGCACATTCAGATGCACAGGTTGACATTGATCAAACACAAGCAGAGGAAACGCCAACAGAAATGGAGAATACTGACTTGATAGCACCTCCTTGCACACAGGCGGAAGCTGCGACTCTCACGGCCGAGCCTGATGGGAAGACGAGTTCAGTAGAAACGGGTACCTCTGAAGAACCTGCACCTGAACAACCAACAAGCCAGGTCACTATGGGTGCTGTGGAGGTGGAGGAAAGCACAGAAAATGTTCAAGAAAACCCTGTAGTAGTAGAAGACGACATCTTCATTTCTACTAAACCAACAGACTCTTCAAATACTGACAGTAACCAACAAGTCCAAGACAAAGATTCCCACCTTGTGAAAGACCAGACTGAGCCAAATAACAGCAGCCTGACACAAGCCTCCGGGCATCGCAGCAGCCGGTCTTCTGGAGATCTCTGCGTTCGCAAGTCACCCAACTCCCGTGGGTCCAGGTTAGCACGTAGACTCTCTGAAGATCTCTTCATCGTGCCAGAGAAAACTAGCAAATCACCATCTACTCCCAATCACCCAGAAGTTAAACACAGTGAATCACAGTCCAATCCTGGAGCTGTAAACCCAACCCAAAGTCCTCCTGATGGGACTTCAGAAGTCACCTCGTCACTGTCCGCAGAAGTGACTGAGATGACAGCGGTACAGCAGGAGCAGGTGCCGCCGCCCGACCCCCCTAAACGTTTTGGTCTCTTCCGCAGACTGAGAGGAGAGCAGCccaaaaaggaaaaagggaCACCCAAAATGCAAGTCCCCAAAATCTTGATTCAGGACTTCAGTGATGGAACAGGGACGGCAAAACTGGTtgaggaagagggggaggagaaaCTGAGTTCCAGGGAAAGGAGGAGGCGGCGAAGGGTCcgagagagaagggagaaagaggaagagaggttgagaaagaagagagagaaggagctggggaaggagaaggagctggggaaggagaaagagagagagaggaggaaaccgCAGACAAGGGGGAAAAGTTTCCAGGTgcaaagagagaaagggagcaGTGATGTGACTCAACCTGCAAAGACTGGATCACAGACGCTGAGACATTCTGCTTCTAATGCTGAATCTTACTTTTGACCAAAACAAATCTCGTTATTGTTTCTGGAGGCATGAGGAGGTGTTTTACTGAGTGCTTGAGACTTGAGCTGTCTCATCTGCCTTTCTGTTGTGCGGAGATTCCTAATCCTAAATCTTTTTTATACTTGAACCTTTtgacatgtaaataaataataaatactgtacataattTGAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU143459 lncRNA downstream 21205 21360316 ~ 21408289 (-) True G106813
TU143475 lncRNA downstream 28311 21389612 ~ 21401183 (-) False G106825
TU143476 lncRNA downstream 28311 21394462 ~ 21401183 (-) True G106825
TU143444 lncRNA downstream 115367 21312363 ~ 21314127 (-) True G106802
TU143431 lncRNA downstream 141713 21286314 ~ 21287781 (-) True G106793
TU143506 lncRNA upstream 2661 21440824 ~ 21443089 (-) True G106848
TU143511 lncRNA upstream 5234 21443397 ~ 21446726 (-) True G106852
TU143512 lncRNA upstream 5234 21443397 ~ 21446726 (-) False G106852
TU143545 lncRNA upstream 51893 21490056 ~ 21490821 (-) True G106872
TU143666 lncRNA upstream 262786 21700949 ~ 21725692 (-) True G106959
XM_039813290.1 mRNA downstream 5881 21416694 ~ 21423613 (-) False zgc:113229
XM_039813289.1 mRNA downstream 5881 21416694 ~ 21423613 (-) True zgc:113229
XM_039813291.1 mRNA downstream 5943 21416694 ~ 21423551 (-) False zgc:113229
XM_039812662.1 mRNA downstream 48316 21367088 ~ 21381178 (-) True clcf1
XM_039812661.1 mRNA downstream 82066 21314294 ~ 21347428 (-) True slc43a1a
XM_039812765.1 mRNA upstream 56731 21494894 ~ 21500640 (-) True LOC120566376
XM_039812766.1 mRNA upstream 56731 21494894 ~ 21500392 (-) False LOC120566376
XM_039813062.1 mRNA upstream 68906 21507069 ~ 21510003 (-) True LOC120566537
XM_039813286.1 mRNA upstream 181700 21619863 ~ 21621608 (-) True LOC120566697
XM_039814152.1 mRNA upstream 254524 21692687 ~ 21697083 (-) False si:ch211-175m2.5
TU143328 other downstream 298524 21127838 ~ 21130970 (-) True G106728
TU142968 other downstream 1195570 20230908 ~ 20233924 (-) True G106443
TU142874 other downstream 1448361 19972415 ~ 19981133 (-) False fgf18a
TU142773 other downstream 1946936 19480018 ~ 19482558 (-) False tlr1
TU142573 other downstream 2210350 19215989 ~ 19219144 (-) False LOC120566717
TU143775 other upstream 352090 21790253 ~ 21790725 (-) True G106988
TU143804 other upstream 681522 22119685 ~ 22120067 (-) True G107015
TU143931 other upstream 1252997 22691160 ~ 22692831 (-) True G107117
TU144086 other upstream 1552824 22990987 ~ 22993229 (-) True G107235
TU144154 other upstream 1691546 23129709 ~ 23134785 (-) True G107284

Expression Profile