RNA id: XM_039813290.1


Basic Information

Item Value
RNA id XM_039813290.1
length 3145
RNA type mRNA
GC content 0.47
exon number 8
gene id zgc:113229
representative False

Chromosome Information

Item Value
chromosome id NC_053121.1
NCBI id CM020918.1
chromosome length 40300294
location 21416694 ~ 21423613 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

ACTGTTATATGCATGACAGGAGGAAGTGTTGGTGTATATGACAGTATCAGAGCAGCTCACCCCATCTTCCTGAGGCTCCACATAGAGCTCATCACCGATCCTGGACAGAGAATGGATGGCTTTGGCCAGTACTGCAagTGTGTGAGGAACGCTGCCGTGCTTGTCTCTCCTCCCATCACCATTGATATAAATGGCTGAGGTGTGACTAAAACAGCATATGTGTACTGAAACTGAGGACGTtggtgaaagagagagacttTGAAAAGACCCGAGTGGACAAAAGTCAGGAATAGTTTTGTGTCTGGCTCAGCTTTGTGccaaaatcaacacaaactggaCTGCTGCTGAAACAATTGTGGATTATGGAGGAGTGGAGAAAAAGAATAATTTCTATCCTAGCTGAGGAAGTTAAACCGAAAGAGATGGACCTGTCTGGATATTTGCGTTAAGAAACTGTTAAGAAGATAATGGAAAAAGATTGGAAAATGAAAACGGAGGGAAACAACTATCACAGGAGTCTTAAAGGCAGTTCTGTTCCTAGATGTCTCAGTCACATAATCCAAAAGACAATCAGGCCTTGCTGCAGTCCATGCTGCAGAGACTGAAGCTCCAGCCAGGAAAAGAGGGCCAGGCATACCTGCACACACCTGTACCCACCACAACTGCCTCCACATGGTGGCAAGATGGAGAAAGAGGAGCCACCAACATCCAGAAAGTAAACAGCAGTCCTGTAAATGGCTTTGAGTTTGGTAGTAATGGTATCCCCTCAAAAGGGTTTGGGATCTCTGCTGCGGACAGTAACTTTGGCCTCAAAGGTGGGAAAATACTGCAACCAGGTCATGGCTGTGAAGTGGACAGGGGTCTCATTTCCTTCCCCTCTCAGAAAGACAACATTGATGGTGACACGAATGAGGACAGGGTGTTGGGACAGGCCACACAGCCTGGGATCACCCTAACAGGAAGAGGGCAGCTGTTTCCTGCTGAATCACTTAAGGATGCTGATATCACTTCCTTTGAGAGGACTGATGGGGCGAGGGTGAGTTTGGGCAGTTCTGCAATGACAAGACACATCCTGAGCAATAAAGATGCTGTCACAAGCATGGGACAGAATCAGGACCAGGACCTACAAGTCTGCAAGTGGTCCTTGAAGCCTGCTAATGTTGACACACAAAGTCAAGGGAATGAAGTGTTGCACATGGAAAATATAGGATTTGGAGCTTTGGCACAAAGTAAAGACATGCAGATTGTCCCAACAAGCAGCAGCTCTAGAAGAAAGCAGCGATCATCTGAGAATAAAACAAGGAGATGGACTCAGAAAATCAAGGAGAGATGGAAGGACAGGCCAGGGAGTTTTGGCAAAAAGGGAAAAGAAGAAGGAGGGAGAGTAGACCAGAAGAGTGAGCAAGGGACTGAAatttcatCTGAAAAACAGCTATTGACAGCAGAACATCTCATCAACACACCAAATAAGGAGGAAGAAAGGACCCTCCCTTCACTCTACAGCAGTGATCGCAGTAACGCCCCTCTTACATACACAGAAGACGCCAATAATGAAGGAAAGATGAGATCGAGCAGTGACTTTGAATTTGGCCTGGGCTCGTTCAGCTTGCTGGAGGAGATCGTCACTGGCCAAGAGTGGGCCAAGTTCATaaaccccaaccaatcagcctactcagccaatcagagaccaTCAGAGCTCAAAATCCCACCAAATCCTCACAATAGTGGTCAATCATATCTGATTTTGAACCAACAAGGAGGTGTGAACAACCAGTGGAGCTTCAGGGGAACTGAGGCATCACCAGATTTAGATTTCAGCATGGCACAAATATCTCCTGATGCCTTTCAAGCTGTCAGCATGGACGTTTCTGAAGGAAAACAAGCTGCAGCGCGAGATGTTCACAGTGAGACCGATCAGTCAGAACCAATGGAGCATGGACATACCCGTAGACCTCCTTTGTTTGTAAAGCAGCCTGAAAATATTCTGGACAAATTAGCGCTAAAGAGCAGAGTCCACCTCAACAGGAAGAGACAGTATCAGTCAGCTGAGCGGAGAGACGAGATGCTACAAACTGAGGAAATAAGTCATGGAAAAGAGGCATACAGAGAGGGGTCCATATCTTCACTGAGCCTAACAAGCAACCAAGTGATGGAGGCGACAGGAGATTCACAACATGATAACCTCATGCCTTTATACATCCGGAACTCTAatcctccacctctctctccatctacTCTTTTTGCTCCTGCACCCCGGGGTGTCCTCAAACATTCCATATCCCAGGAATCACAGTCCTCCATGGGAACAGTGACAAAAAGGAGGCGAGTCGAGGTGAACCGGCGGGTGCATTTTTCCGAGGAGGTGGTGGCCATAACGCCTCCAGAGCTGGACCCGGATGCTACAGACTCAGAGGATTCAGGTGCAGAGGAGGACTCTGTTATAGAGCAGGAGTgtgagcaggaggaggaagaggatgagcAGGCAGCGACAAAGAGGGTGGAAGCACCAACACGCCGGCCGGCTCTCCCTGCCTGGATACTGGCTCTGAAGAGGTGGAACACAGGGAAGAAGGACAGGCAGGGACTGTAAAACTGCATTAATTATAAGGGCTCCCAGACTttcttaaaatgatttattgagtTCTTTTCTGGACACTTAAAGCACCACTGGGTCTTATTGCTCCTCTTCCCTCTCCACACCACCACCATTCAAAATGATAATTGATCAAGTGCTGAGAGTATTTCAAGCCAGTCATTGTTTGACCctcaactgtttgttttttgtccatGCTCTCCACTCTGTCTGTATCCAGACTGGATTATACGCTGCCAGTGTGGCATCAGCAGCATATAACTGTTTAGTCAATTTGGTTGCTGGCATAAACATTCTTCCAGCATCTTTTATCAGAAATGTTGTGttgtcctcctcttcctcatactTACTGTAAATCTCACACtgaccagcagcagactggctAATGGCTCCCTGTCCAGCCATCCTGGGAAATTAACCCCAAAGGAGGAATGAGAGTTGGAGCTGAAGCAGTGGCTGCAGACTGTCGGCTGTTCTCCGTTCAGCTCTTGAAATGTTAAAAGCCCTATTTTAAAGCCATTTGCTCGCTGGGTAGTAAAAATACTATTAGgg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU143459 lncRNA downstream 8405 21360316 ~ 21408289 (-) True G106813
TU143475 lncRNA downstream 15511 21389612 ~ 21401183 (-) False G106825
TU143476 lncRNA downstream 15511 21394462 ~ 21401183 (-) True G106825
TU143444 lncRNA downstream 102567 21312363 ~ 21314127 (-) True G106802
TU143431 lncRNA downstream 128913 21286314 ~ 21287781 (-) True G106793
TU143506 lncRNA upstream 17211 21440824 ~ 21443089 (-) True G106848
TU143511 lncRNA upstream 19784 21443397 ~ 21446726 (-) True G106852
TU143512 lncRNA upstream 19784 21443397 ~ 21446726 (-) False G106852
TU143545 lncRNA upstream 66443 21490056 ~ 21490821 (-) True G106872
TU143666 lncRNA upstream 277336 21700949 ~ 21725692 (-) True G106959
XM_039812662.1 mRNA downstream 35516 21367088 ~ 21381178 (-) True clcf1
XM_039812660.1 mRNA downstream 67760 21314294 ~ 21348934 (-) False slc43a1a
XM_039812661.1 mRNA downstream 69266 21314294 ~ 21347428 (-) True slc43a1a
XM_039812659.1 mRNA downstream 76671 21314294 ~ 21340023 (-) False slc43a1a
XM_039812663.1 mRNA downstream 108559 21302070 ~ 21308135 (-) True tmx2a
XM_039813288.1 mRNA upstream 5881 21429494 ~ 21438163 (-) False tbc1d10c
XM_039813287.1 mRNA upstream 5881 21429494 ~ 21438163 (-) True tbc1d10c
XM_039812765.1 mRNA upstream 71281 21494894 ~ 21500640 (-) True LOC120566376
XM_039812766.1 mRNA upstream 71281 21494894 ~ 21500392 (-) False LOC120566376
XM_039813062.1 mRNA upstream 83456 21507069 ~ 21510003 (-) True LOC120566537
TU143328 other downstream 285724 21127838 ~ 21130970 (-) True G106728
TU142968 other downstream 1182770 20230908 ~ 20233924 (-) True G106443
TU142874 other downstream 1435561 19972415 ~ 19981133 (-) False fgf18a
TU142773 other downstream 1934136 19480018 ~ 19482558 (-) False tlr1
TU142573 other downstream 2197550 19215989 ~ 19219144 (-) False LOC120566717
TU143775 other upstream 366640 21790253 ~ 21790725 (-) True G106988
TU143804 other upstream 696072 22119685 ~ 22120067 (-) True G107015
TU143931 other upstream 1267547 22691160 ~ 22692831 (-) True G107117
TU144086 other upstream 1567374 22990987 ~ 22993229 (-) True G107235
TU144154 other upstream 1706096 23129709 ~ 23134785 (-) True G107284

Expression Profile