RNA id: XM_039813298.1


Basic Information

Item Value
RNA id XM_039813298.1
length 6430
RNA type mRNA
GC content 0.45
exon number 30
gene id kdrl
representative True

Chromosome Information

Item Value
chromosome id NC_053121.1
NCBI id CM020918.1
chromosome length 40300294
location 23710021 ~ 23757151 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GGACTGTGAGTGTTGCACAGAGGCGAAAGGGAGGAGAATATTGTTCAAGGCGCGCATGAAAGACAGGAGCTGATTGATCTGGCTTTTGTGGGATATACCAGACACCAGTTAGAAGCTGATATATACCACTCacttaacttttatttttcaccaacCATTGAATTTAATCCATCTAACTTTTTGTTGTTCGAGAGCACCTGCCCCGAGGATACAGCGGTACATCCGTCTCCTCTTTGCCGGGTCGGGAGTTGGACTCCCCCAGCTGCGCTGGAGAGCTCCCCTGCGAAACGCGTCATGGGATACGGGAGAATCACGGCCGCTTTCTGCATGTGCACCTgagttttttggggggatttacAACAcggactttttttatttaaaaaaaggactcTTTGATTGACTCGCTTTGAGAAGCAACTTTTGTAAGTCACTCGGAACTCTAAGCCTCTGCCAAGGACTCGTATTACTTTATTTATAACGCACGGTTTGGATTCCGGTGAAGGGCTGGCAGGATGGTCTCATCCGACTGCTTCAGATTGGTCGTTGTCATCTTGTGTGGTTCATCACTCACAAATGgACATTTGGAGAGAGAGCACGCGCCTAAGATTCTGCCCCCTGGCAATCCCCTCATTCTTTCTAAGGACGATTTGTTAAACCTCATATGCAGAGGTCATGGCCTGCTGCACTGGACGCTTGCTTATCCCAATCGATCGACCTCATCAGAGGGGGTGAAGGTGGAGCAGTGTGATTCCAGACGTCACTGCAGCAAACTGACAGTCACAAACTTGATTGCCAATGACACAGGAAGGTACAGCTGTAAATACTCCAAAGATGGCTCAGACCACATAACCTCGACCTACGTGTATGTCAAAGATCCCGAGCAACCATTTGTGGTGCCCCAATATCTGTCACCTGAAATGTTGTACAGATACAGCCATGAGACCAGCCTCGTGGTCCCCTGCCGGACGTCCTCTCCTGATACTGTTGTAAACCTCACAGGGCTCCCACCATTATCAGAGAAGGTTAAAAAGGAAATGGTATGGGATCCGATGGTCGGATTCAAGATTCCCTACAATCCCACCACTGACTATACTATGCTCATCTGTACCACCATGGTCAACGGTCGTGAGTTCCACTCACAATACATCCCTAAAAGACTGACTAATGTTCTTAAAAATGTGAAGATCACCCCAGACCGTGTCAAAGTGTTGGTTGGAGACACCTTAATGCTCAACTGTACTGGTGTGACCACCTATAATGGAAGAATCAACTTCACATGGGATATTCCAAAAAAGAGAGAAAATATTTATACGAACAAGACTAAAGTCTACCCTGCTGAGGTTCTTGTGATGAGCAAGGCTTTAATCTTGCCAAACATTACCATGGAGGATAAGGGGGTGTACCGCTGCAAAGCTGAGCTTCAACCCACGATATACAAGAATGTCTCAGCAAAAGTCCTTGTCTATGAGCATCCGTTCCTCAATGTCTCCTATAAGTATGAGCGGCCTAGTACGGTGAATGTCAAAGAAGGTAGAAAAAAGCTTGTATTTGAGCCCAAGGTCAACGCTCTGCCCCCCCCTGACATGGTAGCATGGTATAAGGATGGGGTCCCTATCAACAAGAATTCCACCTGTTACAAGATGTCTGGTTTTAACTTGATCATCACTGATGTGGAGCAGAAGCATGCTGGGGTATTCACCATAAGCCTGGGCAACCAAGTGAAGGGCTTGTCCAGGAATCTGAGCTACACACTGGTAGTCTATGTAAAGCCAACCATTTCAGAGGCAGAGTTTGCCTCTGTTGACGTGCAGCCCTACATGTTTGGCAAACAGTATCAGCTAACCTGCAATGCTTACGGGGTGCCTTTGCCAAACATCACTTGGCTCTGGCAACCGTGTCATTCAGACCCTGCGCTTATTGATTGCATTGCAAACACTAAGCCAATCCTGGTCAACATTGATGACAGGAGAAAATACTCTCACAACTGGATTAAGAGCATAAGTGTCAAATCTGAACTGGTTAAAGGAAAAAACAAGACTGTGAGCACCCTGGTGATAGGCGAGGCTACCATGTCAGGAAAGTACTCCTGTAGGGCCCAGAATGAAGAGGGCACCAGCACAGTGACGATCCCTTTCTACGTTGATGATCACCTTGAGGAAATCACCACCATGCCTCGGACAGCCATCGAGGGGGATGACGTCATTCTGACCTGTCGGGCAGCTCGCTACCTCTACACAAATCTACAGTGGTTGGATTCCAGAAATCAAACGGTCACTTCCAATGTGTCCGGTCTGCAGCTTAGCAACAACTCCATTTCCATTTCTCTCCGTCTGCATAATGTGTCCCAAAACAGCAATACAGGTTACAAGTGCCAAGCATACAAGCTCCACAAGAGGGTTGAACTCAAGACCGCTGAACTTATTGTGGATGTGAGAAAACGCCCCTGGCTGAGTCAAAATCTGACTAATCAAGATGTGAACAGTAGCAGCACCCTGATGCTGGCTTGTTTCGCTCTGGGAGTTCCTCGTCCGAACATCACGTGGTACAAAAATGACGTTCTGGTGGAAGAAGGCCCAGGTATCACTCTGGGAAAGGACGGGGTTCTGACCATCGAGAGGGTGAAGAAAGATGACGAGGGTCTCTATGAGTGTGTAGCCGTCAATGATGAGGGAATCGCGAAAACAAGTGCTGTTGTTACTGTGCTCGgGGATGAAGGGAAGCCAAATGTTGAGGTAATCATTTTGGTTTGTACGGGAGCTGCAGCCACATTCCTCTGGCTCATGCTTATCCTCTTCATCCGCAAGCTAAGGAAGCAACCGGCACATTATAAGATGGGTCCGTCTATCATCATTGACCCCGACGAGTGTCCCCTCGAGGAGCAGAATGATCTTCTTCAGTATGATAGCAGCAAATGGGAGTTTCCCCGAGACCGCCTGCGACTAGGCAAAACTCTTGGCCACGGAGCGTTTGGAAAAGTGGTAGAGGCTTCTGCCTTTGGGATCGACAAGCTCTCAACCTGCAAGACTGTTGCTGTCAAAATGTTGAAAGGAGGCGCGACATCAAATGAGCGGAAAGCTCTGATGTCAGAGTTAAAGATCCTGATCCACATTGGCCATCACCTGAACGTGGTCAACCTGCTGGGAGCCTGCACGAAGCCTGGAGGCCCATTGATGATGATAGTGGAGTTCTGCAAATATGGCAACTTGTCCAACTATTTGAGAGGCAAGAGAGACGACTTTCGTGTCTACAAGAGCCAGGACGGTAAGGTGGTGTCGTCAGGATCGGGCTGCGAGCTGAGCGAGCTGATGAAGCGCCGCCTGGAGAGTGTGGCCAGCACCGGAAGCTCGGCCAGCTCTGGCTTCATCGAAGATAAGAGCTACTGCGattcagaggaagaggaagaagAATCTGAGGATTTATATAAGAGAGTCCTGACGTTGGAAGATTTAATTTGCTACAGTTTCCAAGTTGCAAAAGGCATGGAGTTCTTGGCTTCACGCAAGTGCATACATCGTGATTTGGCTGCACGAAACATCTTGCTTTCTGAGAATAATGTTGTGAAGATTTGTGATTTTGGACTTGCCAGAGACATCTACAAAGACCCGGATTATGTGCGCAAAGGAGATGCCAGACTGCCGCTGAAGTGGATGGCACCTGAGGCCATTTTTGACAAGATCTACACGACTCAGAGTGACGTTTGGTCCTTTGGTGTTCTCATGTGGGAGATCTTCTCTCTGGGTGCCTCCCCGTACCCTGGAGTCCAAATTGATGAAGAATTTTGCTGCAGGCTGAAAGAGGGGACTAGGATGAGAGCGCCAGAATACTCTTCCTCTGAAATATATCAGACCATGTTGGACTGCTGGCAGGGGGAGCCGCAGGAGCGACCGACCTTCACTGAGCTTGTGGAACAGCTGGGAGATCTACTTCAGGCCAGCGTGCAACAGGAGGGGAAGCACTATATACCAATCAACACAGCCCTGCTGGTGAAGGTGGGAGACCCGTCAGCCACAGTGCCGTCAGAAGAGATGCCCACACGACCCGTCTCCCACCGTGACTCAGGGAGCACCTGGAACATCAAGATCCGTCCTGCTAGTGTGAAAACCTTTGACGAGGTTACCATGGAGGACGGGACTAATAAGAACCACGAGGGCGGTCAGTCAGACAGCGGGATGGGCCTGTCGTCTGACAACATGGAGACTTTGAAGCGCCTTGAATCATTGGCAAGCCGACCCCTGAGCATCATGGCCCTGGCGATGAAGGCAGTGAGTAAGAGTAAAGAGTCTGTGCTGAGTGACACAGAGAAGGAGAAGTACCCACCCACAGTCCCCTCTCTGGACTTCAGTCTGGATGACTCGGCCCTGGACGCAGATTTGGAGTGTCACAGCCCGCCGCCTGACTACAACTATGTGGTGCGCTACTCCACCCCGCCTGTGTAACCTCCTGCTACAGCCCTGGAGAGAATCTGAGTGACAGCCTTGAGGCCATTGCTTTGTTCTCCTCTGTTTTGACTCTTATCTCTGGACTGTAGCAAAGTTTGAGAGGAAAACACATTCCCTCAGATTCCCTCTTAAAGTGTTTAGAAAGGACGCTCTGAAATGAATCAAGAATCTACTTGACTGTAACGTCCAACTTTCAGGGCATCTGCTGAGCAACAAAAGGAAACCTGTAGACTCTTGATTCCTTTCCAGTTTTCAGACACAGGCTGAAACGTTAATGCTGCTGGTCCGTTCCACATTCACTGTGATATGTCAAACAGCTGGAAACAGCCTCAGGTATTTCTTTCATCTACTGTGAAAATGAACCACAATCATTCCCACTTTACCACAGATCTGATTGAACTACAACCTTTGATGATGAAGAGTAATATCCAGAAAAGAAGGCTTTTCACGTTGATATTGATTGActttttaatatctgttttcattttattaaaaaagtgaaaacggGATTTGTAGTTTAAAACAAAACGTTAAAGAAAAGACGTTTTTgtaatgtggctacatctgctcACATGAAGGTTGGCTAAAGTTCTGATTTGTTCAAAGCAAAAAGCCGATGACAACAATTGAACAACATtgattgtacttttacttatttgCGTCACTGCTCCTTAAATTCCATAAGAAAAAAGCTCAACTAACTCAGGTTGACCCAGAGTTACTGTCATGTTGTGGTGGGTGTGTTTTAAGCTCTCCTGGTTTAATGAAAATCACAGGTTAATGAGGAAACAGGGTAGAGCCGAGAGTGAGACCAGGCGGCTTCAGATTTAACATTACAGCGCGACCATTGAAGCATTTAAATGAAGAGTTACTGTAGATCTTCCTTTCCCAATCTAGTGTTGAAGAAACTCAAACACtgtgttatttttatttggtCAAACTAAAAAGAAAGTGAGAAGAAAACATGTCATGTGTACAAAAACGAGATTAGACTTCATAGGAACAGTTTATTCAAAAAGCactaataaaatgtatttatttagattGTGAACACTGTCATTTAGTAATGTTTTAGAATTATAATTAAAAGTTAACCAAAGGATTTTCCAGCTCAGTCTTCCTATCAACATGTAATATCCCAACACTTCACCCTAGATGTATATGCTGTTAGTGCTGCTGAACGGAAACATGTATGTGGATTTATGTCCTTCGTCTTGTGCTATGTGTTAGGATAGCTTGCAGAGCAGGCTACAAAaactctacgtgtgtgtgtgaagtgagcACCAGTCTGATCTGGATCatgttgtattatttttttatcatgtaAAATCATGCATTTTGTTTGTAATACCATATGTATTGAAAGTATTGTGGACCAAACTTACTTAGCGTACAAACACCCTGTATAAATGTGGCTAGCTTGTCCTTGTTGACCAGTAAAGAAAACAGTATTTGTCAGTGattaaactgcagtaaaaatagATGGATATTTTGAACCCCTGTGTATTTCCaaattatgttttgtttgtgaccaatttgttttgtttatgcgGAGAGGAAGTGATTACCATATGCACTGATACTTTATATCAAgtataatttctgtattggaaAGTTATATTATTATGAAACAGTGTTGAGGGTCAAagatttctgatttattttgcatttttatttaactATTCATAGTAGGAAATTAACGTTTGTAGTATTTGTTATAGTATTTCTTGCCAGTCTAACATCATCCTTTTTTATGTTAGTATGTTCGCTTATAATGCTGTCTTCAATTTCATTTTAGTTACTGCTATCACAATAACATTGAATGGATTTTATTGCATTTCTTTATACATAACCATGAGTAATAGGACCTCCtatctattttattttgttcatgCAGTGTAACAAGTTAGTTTTGATGAAAGTTATGTTCCCCACACTGTTAACTGAGTATATGaagtaaataaatgaataaagatctatatatttataca

Function

GO:

id name namespace
GO:0018108 peptidyl-tyrosine phosphorylation biological_process
GO:0007169 transmembrane receptor protein tyrosine kinase signaling pathway biological_process
GO:0016021 integral component of membrane cellular_component
GO:0005524 ATP binding molecular_function
GO:0004714 transmembrane receptor protein tyrosine kinase activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU144202 lncRNA downstream 446122 23242037 ~ 23263899 (-) False G107324
TU144201 lncRNA downstream 466081 23242037 ~ 23243940 (-) True G107324
TU144152 lncRNA downstream 485565 23170148 ~ 23224456 (-) True G107282
TU144160 lncRNA downstream 528304 23179692 ~ 23181717 (-) True G107290
TU144149 lncRNA downstream 536603 23092565 ~ 23173418 (-) False trpt1
TU144586 lncRNA upstream 34903 23792054 ~ 23792502 (-) True G107610
TU144596 lncRNA upstream 127446 23884597 ~ 23988901 (-) False rab41
TU144597 lncRNA upstream 127446 23884597 ~ 23971180 (-) False rab41
TU144595 lncRNA upstream 132754 23889905 ~ 23892263 (-) False rab41
TU144657 lncRNA upstream 442348 24199499 ~ 24259346 (-) True G107667
XM_039813296.1 mRNA downstream 12531 23694270 ~ 23697490 (-) True cdx4
XM_039814054.1 mRNA downstream 17212 23686594 ~ 23692809 (-) True chic1
XM_039813646.1 mRNA downstream 58299 23646135 ~ 23651722 (-) True slc25a43
XM_039813645.1 mRNA downstream 64525 23643288 ~ 23645496 (-) True slc25a5
XM_039813067.1 mRNA downstream 70675 23631502 ~ 23639346 (-) True si:rp71-46j2.7
XM_039812850.1 mRNA upstream 13140 23770291 ~ 23856291 (-) False dlg3
XM_039812858.1 mRNA upstream 13140 23770291 ~ 23856137 (-) False dlg3
XM_039812854.1 mRNA upstream 13140 23770291 ~ 23856136 (-) False dlg3
XM_039812848.1 mRNA upstream 13140 23770291 ~ 23856134 (-) False dlg3
XM_039812851.1 mRNA upstream 13140 23770291 ~ 23856133 (-) False dlg3
unassigned_transcript_474 other downstream 336013 23373936 ~ 23374008 (-) True trnaf-gaa_66
TU144162 other downstream 523010 23184272 ~ 23187011 (-) False rnaseh2c
TU144153 other downstream 533021 23175691 ~ 23177000 (-) False trpt1
unassigned_transcript_473 other downstream 544593 23165357 ~ 23165428 (-) True trnaw-cca_12
unassigned_transcript_472 other downstream 548562 23161388 ~ 23161459 (-) True trnaw-cca_11
XR_005640439.1 other upstream 129673 23886824 ~ 23892301 (-) False rab41
TU144931 other upstream 816290 24573441 ~ 24579099 (-) True G107864
unassigned_transcript_475 other upstream 1104961 24862112 ~ 24862184 (-) False trnav-uac_15
TU145115 other upstream 1522452 25279603 ~ 25282199 (-) False G107989
TU145117 other upstream 1522452 25279603 ~ 25288086 (-) True G107989

Expression Profile