RNA id: XM_039813322.1


Basic Information

Item Value
RNA id XM_039813322.1
length 1974
RNA type mRNA
GC content 0.45
exon number 5
gene id LOC120566716
representative True

Chromosome Information

Item Value
chromosome id NC_053121.1
NCBI id CM020918.1
chromosome length 40300294
location 19277131 ~ 19282674 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CTTTTCTGATCTGAAGCTGATCACTAAGAGAAGACACGTCAGGCTGCTCAGTGTAGTGGGTGTGAACGTTTGCTGTTGAAGAGAAGTTGATCTGGAAGCTGCTGACTGAGTCAACAGAGGCTGAACACTGAGGAGACATGGAAGCTGTGATCGGACTGTTGCTGATGATACTCGGAGTCTCTCATGGTGTCGAAACCTACTGTGATGGCCGACAGAATGGAGCTCAGTGTTATGGAGCTTTGGGAGGAACTGTGGTCCTCCAGCTGATGGACAATGCCTCAGAAATATCTAGATACACATGGTCAAtcaaaacaacaaccaaaacagatacaagaacaacaacaacaatactcATAGTGATAAAGAATGTGATTGTGTCTAATACGATAGCAAACAGATCCTTCTTTACTCCCAGTAATGGAACATTTAGGATCAACAACCTGAGCTGGACTGATGGAGGTGAATATGAACTTGTAATCTTTGATTCAGACGGAAAGATATCAGAGCAGCGGACTCTACAGTTGACCATTCAAGCTCCTGTGTCCTCTGTCCTGCTGGTCTCTGAGTGTCTGTCCCAGGGAGAGATGAGGGTGTCCTGCTCCTCTGAGGGAGGGGACAGTCCTCAGTACAGCTGGACTCTGGATGGACGCACACTGACAGACGCTGAGCTCCTCTCTGGAAATACTGAGACTAACAACATCACTCTGAAACAAAAGGTCTCAGGACGACTGGTCTGCTCAGTCAGGAATCAAGTCAGTAGGATATCTACCTGTGGATTCACATTTATTAACTGCACTTTACCCAATGGGATGCGCATGTCAAAGTGGGTGTTTGCAGCCAATAACAACCTGTGTATTGAACCAACAACAGCTCCTAACACGAGGACAGAAACTGTGGATCACTCCCTGCTCATATGTGGTGTGCGAGCAGCTGTGGTGGTTCTTGCATTAATTGGGATCACCGTCTATTTTGCTTGGAAGAAGAGGAAATACAAGATGGTCCGTCGAAAGATGGAACATCAAGAGAACTCTGTTGTGATGGTTGAAATGAGAAGTTGAACTTTAACTCTGTGAATCCACCACCTTTAACGCTTCTGTCATGTCGCGCTccactctattcctatgggtgacgtcaagcgacttcaacgtgcacgcaaagcattccgggaaggcggtgctacatttgagaaaatgtagcccgtcaaaaagctggccgatgcccagctttatgcaaatgaatccgttgaacgcgacgcgactatccagtagaagtagagcACAAAGGAGACGGGGAGAACATCACTTCTCCCTGACACAACATTCCACGCTGGACCTGCCCATAGCTGTAAATTGAGGAACCCCCATCAACGTACAAATGAGGGGAGGCGTCGCGACACCACGCGACAGTCGTGTtgcaaaagtggatctgtaccgtcAAAAGCGGCTagtgttgaagttaaaaaagttaaaaccatgcttatgttttgaaAAGAATGTACTTTCTAGATTTAATCAGATAACTACACTAATTAGCATTTGTCTGCCTCACCCCAAActcaagcttctaaagaatcaTCAGGTCTTGTCTGACATTTAGCATATTGGAAAAGACTCATTGTCCTCACAGAAAAGGTAATTTGTTCCTGctttttggggagccactccctgctgggccagacttgattagaaaaaggaaatgcatatctctgtaaacttatcggcactaccatgataaacaaCCTTTGTCTGGGAActggagtaaacctgaaatcagaggtgtgtcttTAACCTGGGACAGTTTCCATTCAaggaaacacccacaattcGACAGGAATACAATTCTGATCCTGAGAATGATTCAGGACTGCGGACTGTGACCCCACAAGCATGTCTTGCagtccactgctggcagtgttttcatgttttatgtttgattgtttttgtcatgttgtTTTCATCAtgctgttttattaaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_005640450.1 lncRNA downstream 11655 19262913 ~ 19265476 (-) True LOC120566720
XR_005640452.1 lncRNA downstream 14259 19262030 ~ 19262872 (-) True LOC120566722
TU142574 lncRNA downstream 61213 19214800 ~ 19215918 (-) True G106164
TU142520 lncRNA downstream 143118 19132620 ~ 19134013 (-) True G106128
TU142523 lncRNA downstream 146140 19129286 ~ 19130991 (-) False G106128
XR_005640451.1 lncRNA upstream 4402 19287076 ~ 19288469 (-) True LOC120566721
TU142694 lncRNA upstream 30135 19312809 ~ 19314416 (-) True G106243
TU142699 lncRNA upstream 37589 19320263 ~ 19321306 (-) True G106248
TU142713 lncRNA upstream 57820 19340494 ~ 19400495 (-) False G106259
TU142731 lncRNA upstream 112136 19394810 ~ 19395994 (-) True G106276
XM_039813325.1 mRNA downstream 26695 19219074 ~ 19250436 (-) False LOC120566717
XM_039813326.1 mRNA downstream 26695 19219074 ~ 19250436 (-) True LOC120566717
XM_039813328.1 mRNA downstream 26695 19219074 ~ 19250436 (-) False LOC120566717
XM_039813327.1 mRNA downstream 49471 19219074 ~ 19227660 (-) False LOC120566717
XM_039813329.1 mRNA downstream 54833 19219074 ~ 19222298 (-) False LOC120566717
XM_039812734.1 mRNA upstream 19131 19301805 ~ 19305065 (-) True arsia
XM_039812548.1 mRNA upstream 49032 19331706 ~ 19334698 (-) True aldob
XM_039814361.1 mRNA upstream 83146 19365820 ~ 19373983 (-) False LOC120567398
XM_039814360.1 mRNA upstream 83146 19365820 ~ 19373983 (-) True LOC120567398
XM_039814359.1 mRNA upstream 93530 19376204 ~ 19384972 (-) False LOC120567397
TU142573 other downstream 57987 19215989 ~ 19219144 (-) False LOC120566717
TU142417 other downstream 585721 18687788 ~ 18691410 (-) True LOC120566257
TU142254 other downstream 971436 18303269 ~ 18305695 (-) False reep2
TU142092 other downstream 1285260 17987258 ~ 17991871 (-) False sfxn1
TU142030 other downstream 1481908 17783560 ~ 17795223 (-) False LOC120567448
TU142773 other upstream 197344 19480018 ~ 19482558 (-) False tlr1
TU142874 other upstream 689741 19972415 ~ 19981133 (-) False fgf18a
TU142968 other upstream 948234 20230908 ~ 20233924 (-) True G106443
TU143328 other upstream 1845164 21127838 ~ 21130970 (-) True G106728
TU143775 other upstream 2507579 21790253 ~ 21790725 (-) True G106988

Expression Profile