RNA id: XM_039813331.1


Basic Information

Item Value
RNA id XM_039813331.1
length 3058
RNA type mRNA
GC content 0.49
exon number 19
gene id LOC120566723
representative False

Chromosome Information

Item Value
chromosome id NC_053121.1
NCBI id CM020918.1
chromosome length 40300294
location 19059277 ~ 19068071 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

AACCATTTGCCCCGTTGGCCTTCAGATGAAACCTTATCTGGCTAGCTAGTCCGAGGAAGATCAAAACTCCACAGCAGGCACCTTTGGGAGGACTGTTGGAAGTCAATCAGTTGGAGAGCTGTGTTGACAGTGCTCAGTTTTAGAGACATAATGTACGGGCTGCTGTGTGAGAGTCTTCACGACTTCATCAAGGAGTCGTACGGAGATGATGTGTGGAAGCTGGTCAGAGAAAGAGCAGATGTCAGGTTGCACTCTTTTGTCACCCACCAGgtgtaTAGTGAGAGTGTGATTCCCCGTATTGCAAAGGcagccagtggagtgacaggCACACCTTACAATGAGCTGATGAACTCATGGGGCGTCTACTTTCTCGGCTTTGTTGGGAAGTACGGCTATGACAGGATCCTCAAGGTTCTGGGCCGTCATGTACGTGACTTTGTCAATGGCCTTGATAATCTCCATGAGTACCTGCGCTTCAGCTACCCTAAGGTGCAGCCTCCAACCTTCTTTTGTCAGGAGGAGTCAGCCACTGGAGTCACCCTCCACTACAGGAGTAAGCGCAAAGGCTATCTGCACTACGCCATGGGTCAGCTAAGGCAGATGGGGAAACAGTTCTATGACACCGACATCCATGTGGAGGTGCTGTCTGAGCAGATGGTCGGAGACTACTCTCATGTCACCATGAgGCTGAACTTTGACAACTCAGCCTACCGCTACATCATGAAGGAGGATGAGGAAGAGCAGGAGATTTTGCCCATTACCTCAGACTTCTTCTTTGAGGTCTTCCCCTTTAACATCGTCTTCAGACAGGACATGGTGGTGCATAACGTTGGCTCAGGCCTGGCGACAGTCTTCCCTGATCTGGATGGGAAGAAGATCAATGATGCCTTCTTGCTGGCTCGCCCCCTAGTGGAGTTCACCTGGAACATGATCATCTCCCACCCCAACAACCTGTTTGAGATCATGTCCAAGGAGCctgtgaagagagagaggaacctTCACAATCGAGTCCAGAATTCTGACTATGAAAATGCCAATCGCACTGCTGACGTAGACGTAGAGCTCATGGCTTTCCAGTCCATCATTGGAGATGATTACAAAGACGGTAACAGCGCTAATGCGATGGAGAGCTGGGGCGATGGGAGCCGCTGCCTAAAACTAAAAGGACAAATGAGATATATGCCAGAGTGGGAGTCCATCATCTTCCTGGGAACCCCTGTGATGGAGAGTCTGAGTGCTATGTTTAGGACCGGCCTGTACATCAATGACCTAAGCATGCACGACTCCAGCAGAGACCTGGTGCTGGCGGGCACGCAGCAGTCAGAGGAGCTGAAGAGAGCTCTCATACAGGAGCAAAAGAAGTCCAGTAAGCTGGAGGAGAGCATGAAGATGTTGGACTATGAGATGAAGAAGACTGATGACCTCCTGTACAGAATGATTCCCAAGCCAGTGGCTAAAAGGCTGCGCAAAGGAGAGCCGGCTGTGAACACTTGTGAGGTGTTCCCAGATGTGACCATTCTTTTCAGCGATGTTGTGGGATTTACTCGCATTTGCAGCCACATCACTCCAATGCAGGTGGTCTCGATGCTCAacaccatgtacacactgtttgACACGCTCAGCGAGAAGCACCGCGTCTTCAAGGTTGAGACTATTGGAGATGCCTACATGGTGGTAGCTGGGGCTCCAGAGAAGACAAAGTATCACGCTCACAACATCTGTGACATGGCCCTGGACATGGTGCGCTCAATAGATCACCTGAAAGACCCCTCTAATGGCAACCACATACAGATTCGTGTTGGGATCCACTCTGGGATGGTGGTGGCAGGTGTGGTGGGACATAAGATGCCACGTTACGGTCTGCACGGTGACACAGTCCACACCGCATCTGCCATGGAGAGCAATGGAAAGGAGATGCACATTCAGCTCAGCAGCGCCACCTACGAGCACCTGAAAGGGAGTcactttatttttgaaaggaGGGGCACCATTACCATCAAGGGGAATGTTGAAATTGAGACCTACTGGCTGAAAGGAAAGAGGGACAAAGACGGAAACGCTCAGGCGGCGTGTCCTCAGTTTGAGAACCAGACCATCAGTAAGGCCAACATCTCAGGCACTGAGGTCACAGGAAATAAGGAGGGACTGGTTTCCCCACTAGCGTCAGGGCGGGACGAGGATGATGTCAAGTCTACTCGCTCTCATCGTATCAAGATGGAAATTTCAGGCCATTCTCTAAAGGGGTCGATGGAGTTGTGCCGTGTGGAGAAGATGTCTGTTCATAAGGCCCACTATAAGGATGCTTTGCAGGACGGCCTCCAGGACGCTCACCTGGGACTGGACTCACCTGAGTCTGACGGCAGAGACTGCATCATGGAGTCCCCTGACAGCTCCTGTGACTCCCGCTGCTCCAAGAGTGCCACATGCTCCGTGTCATGAGCCAAACAGACGCCAGCTGATGCTATAGCCAGTAATTCTTTTGTATTACTGTTTCTAAAACACTTTTTGTTCAACTCATGAACTATTAGGCCAAATGCCAGATAGGAATGCTGTTTTTGCTGTTATTTTGGCATTCTTGTGGTGATACCATGACAATCTCTTTAATGACGTATTGTTAGTATACATGGCCTAATATGTAATGCTTGAAATTTCTAGTGGCCTAGAGTGTTGTTATGTTGCAGAGCAAAATCATCATTCCTTAGTTAGCTTTgataatacagaaataaatctgtatttttatttacacTTAGATCAGTTTGAGTGGGCAGACACTTCAATTAATACCTCACATCAGTCACCTCAAAGTAGTTGCCACTAGAACGTTGCTGTGTCACTGCCATGCGGTTCAGCTGGACACAAGCTCAGTAATTTCCTGTTTGTTCTGCTGCACCTTGTAGATTTGACATCTTATTTCATCCTTTCAAGAAATCCCTCTGTATCTCTCCTCCATCCTGCATGTCTGGATTTATTGTTCAATAACAGTCTCCTCAAATTCACAGCCACGGCACAATGTAAACGCTTGTCAGTTCAGTGAAAATAAAGCGAGATGCCTGCTGAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU142451 lncRNA downstream 3583 19049374 ~ 19055694 (-) False G106074
TU142452 lncRNA downstream 6268 19049374 ~ 19053009 (-) True G106074
TU142450 lncRNA downstream 11414 19047264 ~ 19047863 (-) True G106073
TU142448 lncRNA downstream 40466 19017752 ~ 19018811 (-) False rgs14b
TU142437 lncRNA downstream 57163 19001772 ~ 19002114 (-) True G106068
TU142462 lncRNA upstream 2781 19070848 ~ 19071183 (-) True G106084
TU142463 lncRNA upstream 3996 19072063 ~ 19072742 (-) True G106085
TU142523 lncRNA upstream 61219 19129286 ~ 19130991 (-) False G106128
TU142520 lncRNA upstream 64553 19132620 ~ 19134013 (-) True G106128
TU142574 lncRNA upstream 146733 19214800 ~ 19215918 (-) True G106164
XM_039813337.1 mRNA downstream 14326 19017752 ~ 19044951 (-) False rgs14b
XM_039813335.1 mRNA downstream 14326 19017752 ~ 19044951 (-) False rgs14b
XM_039813336.1 mRNA downstream 14326 19017752 ~ 19044951 (-) False rgs14b
XM_039813334.1 mRNA downstream 14326 19017752 ~ 19044951 (-) True rgs14b
XM_039813338.1 mRNA downstream 14348 19017752 ~ 19044929 (-) False rgs14b
XM_039813963.1 mRNA upstream 5915 19073982 ~ 19079321 (-) True rbm22
XM_039814250.1 mRNA upstream 75642 19143709 ~ 19145147 (-) True slc35a4
XM_039814255.1 mRNA upstream 77171 19145238 ~ 19147027 (-) False LOC120567311
XM_039814253.1 mRNA upstream 77171 19145238 ~ 19146741 (-) True LOC120567311
XM_039814252.1 mRNA upstream 77171 19145238 ~ 19146589 (-) False LOC120567311
TU142417 other downstream 367867 18687788 ~ 18691410 (-) True LOC120566257
TU142254 other downstream 753582 18303269 ~ 18305695 (-) False reep2
TU142092 other downstream 1067406 17987258 ~ 17991871 (-) False sfxn1
TU142030 other downstream 1264054 17783560 ~ 17795223 (-) False LOC120567448
XR_005640507.1 other downstream 1481466 17522141 ~ 17577811 (-) False nexmifb
TU142573 other upstream 147922 19215989 ~ 19219144 (-) False LOC120566717
TU142773 other upstream 411951 19480018 ~ 19482558 (-) False tlr1
TU142874 other upstream 904348 19972415 ~ 19981133 (-) False fgf18a
TU142968 other upstream 1162841 20230908 ~ 20233924 (-) True G106443
TU143328 other upstream 2059771 21127838 ~ 21130970 (-) True G106728

Expression Profile