RNA id: XM_039813359.1


Basic Information

Item Value
RNA id XM_039813359.1
length 4277
RNA type mRNA
GC content 0.49
exon number 10
gene id mid2
representative False

Chromosome Information

Item Value
chromosome id NC_053121.1
NCBI id CM020918.1
chromosome length 40300294
location 22435278 ~ 22603271 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

gtctccttccctctctcattTTGCCAAAGTTGAATATTCCGCTTGCCCGTGTGCTGTCGCCAGCGGAGCGGTGCAGCACCACTGACTGAACGGACCGGGCTGGTATTTTGCGCTGCGCCGTGTGGAACAGACTTTGGGAGAAGGAGTCCTCTACAGTATCCCGGCTCGGATCTGTCTGTCCATTTCTCCTCTGTTTCTTCTAACTTCATTTCGGGCTACGTTCAAGATGACAGAAGAAAAGAGAGTTCGGCATGTAAAGCTGGTAATTGGCCAGCTTTTGTGGGATTTGATGTCACCTCTAGATTGGTTCAACTGAAGATGGAAACACTGGAGTCTGAGCTGACCTGCCCGATCTGCCTGGAGTTGTTTGAAGATCCTCTGCTTTTGCCCTGCGCCCACAGCCTGTGTTTTAACTGTGCTCACCGCATCCTGGTGTCTCACTGCTCCACCAGCAAGCCCCTTGAGTCCATATCGGCCTTTCAGTGCCCCACCTGTCGTTACGTCATCACGCTGAATCACCGCGGCCTGGAGGGCCTTAAGCGCAATGTGACGCTGCAGAACATCATTGACCGCTTTCAAAAGGCCTCCCTTAGCGGCCCCAATTCCCCCACTGAGAGCCGGCGCCTGCAGCCGCAGCGGCCCTACACCGCCACCATTAGCGGTACAATAGCTGGGACAATCGGCGGCGGTGGTGGTGGCACAAGTGGAAGCAGCGCCCGCGGCAGCCCGGCCACTTCCAGCCACTCCCACCCGCACGCCAACCACACCAATCACACCAACCACACCAACGCAAACCACAGCCCAGCTGTTGTTGCTAAAATGGATCCACGCATCAGCTGCCAGTTCTGTGAGCAGGATCCGCCGCGTGAGGCTGTCAAAACGTGTGTCACGTGTGAGGTATCGTACTGCGACCGCTGCCTCCGCGCAACACACCCTAACAAGAAGCCGTTCACAAGCCACCGCCTTGTGGAGCCGGTGCCAGACACTCACATTCGCGGTCTGACCTGCTTGGAGCACGAGAATGAGAAGGTCAACATGTACTGCTTGGTGGATGACCAGCTCATCTGTGCCCTCTGCAAGCTGGTGGGGCGTCACCGGGATCACCAGGTGTCCTCACTCACTGAACGCTTTGATAAGCTCAAGCAAACCCTGGAGAACAACCTGACCAACCTGGTGAAGAGAAACAGCGAACTGGAGAACCAAATGGCAAAGCTCATCCAGATCTGTCAACAGGTTGAGGTGAACACAGCCATGCATGAAGCCAAGCTGGTGGAGGAGTGTGATGAGCTAGTCGAGATAATCCGCCAGAGAAAACAGGTCATCGCTGTGAAGATCAAAGAATCCAAGGTGATGAAACTGCGTAAGTTGGCTCAGCAGATCGCAAACTGTCGCCAGTGTCTGGAGCGCTCTAGTGCCCTCATCACACAAGCTGAACAGAGCCTGAAGGAGAACGACCACGCCCGCTTCCTCCAGACCGCTCGAAATGTAGCAGAAAGGGTTGCCATGGCGACGGCCTCCTCCCAGGTACTCATCCCTGACGTCAACCTGAATGAGGCGTTTGACAACTTTGCCTTGGACTTTTCCCGGGAGAAGAAGATTCTGGAAGGACTAGATTACCTAACAGCTCCCAGCCCGCCATCCATAAGAGACGAGCTGTGCACCGCCTCCCATGACACCATCACTGTTCACTGGACGTCAGAGGACGAGTTCAGCGTCACCTCCTACGAGCTGCAGTACACCATCTACACCGGCCAAACTAATTTCATCAGTTTGTACAACTCGGCAGACAGCTGGATGATCGTACCCAACATCAAGCAGAACCACTACACGGTGCACGGCTTGCAGAGTGGCACCCGTTATATCTTCTTCGTCAAGGCTATCAACCAGGCAGGAAGCCGCAACAGCGAGCCagcccgcctcaaaaccaacaGTCAACCCTTTAAGTTAGACCCAAAGACGGCCCACAAGAAGCTGCGTCTGTCCAATGACTGTCTGACCATGGAGAAAGACGAGAGCTCACTGAAGAAGAGCCACACCCCGGAGCGCTTCAGTGGCACAGGCTCTTATGGCGCAGCTGGTAACGTCTTCATTGACAGCGGGTGTCACTACTGGGAGGTTCTGCTGGGAGCATCCACATGGTATGCCATCGGCGTTGCTTACAAATCAGCCCCGAAAAATGAATGGAGTGGCAAGAACTCATCCTCATGGGTGTTCTCGCGCTGCAACAACAACTTTATGGTGCGCCATGACGGCAAGGAGATGCTGGTGGAGGCAAGCCTGCAGCTGAGGCGGCTGGGTGTCCTGCTGGACTACGACAACAATTCACTGTCCTTCTATGATGCCATGAACTCCCAGCACATTCACACCTTTGAAATCTCCTTCCTCCTGCCCGTTGTACCCACTTTCATGATCTGGAACAAGTCAGTCATGATACTCTCAGGGCTACCCGTCCCCGACTttgttgatggtttggcctCAGATCTTCAagagcagcaacagcagcagatgGGCCTGTGCCGACAAGAGTCTCCATACTTGACCGGGATGAAGACCTGCCACTGAGAAAAGGCCCACCAAGGGCCCGGTGACTGGTTGATTGGGAGCTGAAAGACGTTGACAGTGCGACTGAGTTCTATTCTCTGCATTTAGCGAGGACCAGTTACTTTCTTATGGATTTAGAAAGTGTTGAAGATATGCACACCAGTCTGGAAAAATGTCAGTCCTGTTAGTTTGTAGCGATCCAATGCTTTGCTAATCCATCAGTGGGAACAAGGTCTCTTGACCACAAACATCAGTAGACCTAAAATCATCTGATGTCCTAGCGTCACTCAGGGCAGGGCTGGGCATCTGGTTTTAATGACCATTTAAGGTCTTCCTTTTTGATTTATCTTCCTCCTGAATTGACCCTAGGCTGAAGACCAAGGAAGGAATATTCTCATCTTCCATTTAGAGTTTGAAGTTACAACATTTGAACAGTGAGATTACTTCTCAGCTGTGgtagattaaaaaacaaaacaatgcagATCCAAAAATCCAATGAAGACTGCAGACATTTTAACTGATATGTCAGTTATCTGTTTTCTTGGCAAGAGTTatatgagaagatcaataccactctcatatttgTACATGAAGCTAGAGCCAGCAGCCAGGTTAGTTTAgcatagcataaagactgggcGGCCTCCAGTCTAGTTCCAGCACATAACTTCCTGTAAAACTAGTGTCGATTTTACATTTCTCagtaaacaaatgagatattaTGTGTACAATGGTTTTTTACCTTTGGACTGAGCCAGACTAGCAGTTTCCCTGTGTTTCCCGCCTTTCTTATAAACTAAGCTAACTGCTAGCTTTATTAGCGTGCAAATATTCTTCTAATCTAACTCTTGACAAGAAAGGGAATAAGCATGTGTCCCAAAACATATCTTCCTTTAAATGAGGATGTGCCTTCTTTGAATCCACTTTAATGTGTGAACTACATGCTACCATCTTGCTAACGCAAATACATGCTAGCTGTGGACATTTTGTATTGCTTCACATCACTGTTCATGTGTTGTAGCCTCAGTAGCTGTAAGTGGTCGTTGCTAAAGTCTTTTCCTTGATCTTCCTGCTAGTTTTGACACAGCGGTCCTGTTTGTGTTGGCTGGTTGTAGCTTCCGAGTATCAGGAAGTGTTAACTTTGCTCCCAGATATGAACAAGATGTTCATGTGACTACTCGACTTGTATAATAAGAGGTTTATTGAATATTATAGGAAAAAAGTGTTATTTATGACAAAAAAGATCGtttacttttattattaatCTCAACATATTCATGATGCACTTTTTGATTAACACTATTTCCCCTCTATGAGTATTAAAGTAGATGGAGCTGAGAGGCAGGGATGTAATGGGGAGGCAAAGTGACAACTAGCACTACTGCTGGCTGTGAAAGCCTCCTCTGAAAAATATACATCACCTTATTTTCCTACTTATatttcaacccgttctcattccaaactcgtaaaataagtacgtttggtcagtggccttcagcgtctgatgcgacgaaaaaggcacccttcggcgtatttgtgtaacgtactggggagagccgcagttggatgagatttagcgagtggtatgtaaggagAAATTGTTGCATGAGGAGGTTGGTTGTGGTGGATGGGtgaaacaccggactttcactcaggagactcgggttcgcgccccgcgtgtggtgttttgtttccccgtctccggcgtgtgtttcccggcttttgaggcgtccttc

Function

GO:

id name namespace
GO:0005622 intracellular anatomical structure cellular_component
GO:0008270 zinc ion binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU143843 lncRNA upstream 73283 22415002 ~ 22415335 (+) True G107050
XR_005640407.1 lncRNA upstream 91567 22390353 ~ 22397051 (+) True LOC120566464
TU143814 lncRNA upstream 110278 22331012 ~ 22378340 (+) True G107025
TU143816 lncRNA upstream 110278 22331012 ~ 22378340 (+) False G107025
TU143779 lncRNA upstream 644668 21843662 ~ 21843950 (+) True G106992
TU143870 lncRNA downstream 27808 22631079 ~ 22631370 (+) True G107073
XR_005640528.1 lncRNA downstream 119754 22723025 ~ 22725653 (+) True LOC120567160
TU143967 lncRNA downstream 220330 22823601 ~ 22823862 (+) True G107149
TU143988 lncRNA downstream 253384 22856655 ~ 22856868 (+) True G107161
TU143991 lncRNA downstream 262697 22865968 ~ 22866201 (+) True G107164
XM_039814209.1 mRNA upstream 688623 21771722 ~ 21799995 (+) True klhl4
XM_039814210.1 mRNA upstream 688623 21771725 ~ 21799995 (+) False klhl4
XM_039813124.1 mRNA upstream 728397 21724430 ~ 21760221 (+) False ahnak
XM_039814406.1 mRNA downstream 46747 22650018 ~ 22660250 (+) False pmt
XM_039814405.1 mRNA downstream 47107 22650378 ~ 22660250 (+) True pmt
XM_039813063.1 mRNA downstream 61619 22664890 ~ 22684172 (+) True zgc:152774
XM_039813163.1 mRNA downstream 82015 22685286 ~ 22705021 (+) True f8
XM_039814015.1 mRNA downstream 140336 22743607 ~ 22753993 (+) False LOC120567158
XR_005640584.1 other upstream 1027168 21448804 ~ 21461450 (+) False stx3a
TU143018 other upstream 2136451 20351721 ~ 20352167 (+) True G106465
XR_005640374.1 other upstream 2427280 20043031 ~ 20061338 (+) False LOC120566323
TU142686 other upstream 2882845 19604840 ~ 19605773 (+) False G106237
TU142049 other upstream 4595088 17890967 ~ 17893530 (+) False gabra6a
TU143990 other downstream 258919 22862190 ~ 22865676 (+) True G107163
TU143997 other downstream 351701 22954972 ~ 22973761 (+) True G107168
TU144145 other downstream 655000 23258271 ~ 23262229 (+) False tgfb5
TU144214 other downstream 665520 23268791 ~ 23270216 (+) True G107333
TU144280 other downstream 851296 23454567 ~ 23466184 (+) False ubl3b

Expression Profile