RNA id: XM_039813363.1


Basic Information

Item Value
RNA id XM_039813363.1
length 2335
RNA type mRNA
GC content 0.46
exon number 15
gene id LOC120566745
representative False

Chromosome Information

Item Value
chromosome id NC_053121.1
NCBI id CM020918.1
chromosome length 40300294
location 1768538 ~ 1783651 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

AATGGTCCATTCTCATTCAGTATAATCCTTGTAGGTATTGCAAGCAGTTTCATATGACTCCACAGAGAAAAGGCTACAGGCACCTCTCTGAAGAAGTGTTTCGACTacggattaaaaaaacacaaatgtcaacTTCCCCACCAACCTCTTGCGATTGGATGATCCTGGTTGAACAGAAAAATATAAATGTCCGAGTTACAACCATGGACGCTGAGCTGGAGTTTGCCATCCTGCCCAGCACTACTGGCAAACAGCTTTTTGACCAGATAGTGAAGACGATCGGCCTGAGGGAAACCTGGTTCTTTGGCCTCCAGTATCAGGACAGCAAAGGCTTCTCTACCTGGCTTAAGCTGAACAAGAGGGTGACAGCTCAAGATGTGAAGAGGGACAACCCTTTGTTGATTAAGTTCAGGGCCAAGTTTTACCCTGAGGATGTCGCGGATGAACTGATCCAGGAGGCAACACAGCGCCTCTTCTTCCTACAGGTAAAAGAAGGCATCCTAAATGATGACATATACTGTCCACCTGAGACTGCGGTGCTCTTGGCATCGTATGCCGTTCAGGTCAAACTAGGAGACTACAGGAAAGACTATCACGTACCGGGATACCTCGCAAGAGAGAAGCTGCTGCCACAGAGGGTTTTGGAGCAGCACAAGCTGAATAAGAATCAGTGGGAGAATAGAATCCAGGTGTGGCATCAAGAGCACAAGGGATTGCTGAGGGAAGACGCCATGGTGGAGTACCTCAAGATAGCCCAGGATCTGGAGATGTACGGGGTCAACTACTTTAACATCAAGAACAAGAAAGGATCAGAGCTGTGGTTGGGAGTGGACGCGCTGGGGCTGAACATCTATGACAAGAAGGACAAGATGACCCCAAAGATTGGCTTCCCCTGGAGTGAGATCAGAAATATTTCCTTCAATGACAAGAAGTTTGTCATCAAACCAATCGACAAGAAAGCTCCGGACTTTGTTTTCTACGTCCCTCGTCTTCGCATCAACAAACGTATCCTGGCATTGTGTATGGGGAATCATGACCTGTACATGCGTAGACGTAAACCTGACACCATTGAGGTGCAGCAGATGAAGGCCCAGGCCAGGGAGGAGAAGAACAAGAGGCAGATGGAGAGGGCTCTGCTcgagagtgagaaaaaaaagcgAGAAAATGCAGAGAAGGAAACAGAGAAGATTGCTCGTGAGACCATGGAGCTGATGGAGAGATTGAGACAGATTGAAGAGCAGACAAAGAGAGCTCAAGATGAGCTGGAGGAGCAGACACAAAGGGCTCTTGAGTTAGAGAAGGAGAGGACGATTGCTCAGGAGGAGGCTGAGCGCCTGGACAAGGACCGCAGAGCTGCATTGGAAGCTAAAGCAGCCCTGCTGTACCAGTCTGAAACCCAGACCAAGAGCCAAGAAAGCCTGgccACTGAGCTGGCAGAGCTTACCTCTAAGATCTCCCAGCTGGAAGACGCCAAGAAGAAAAAGGACGAGGAGGCGAATAGATGGCAGAAAAGGGCGATGGTGGTAGAAGCTGATTTGAAGCAATCCAAAGAGGAGGTGAAGACTAAACTCATGGGTGTCCACATCCAGGATTCTGTCCATCCTCCTATGCCTGAGCACGACGAGACGGATGAGAGCAGTGATGAGGCGAGCGCTGAGCTGACTTCTCCAGGCATGGTCCGAGATCGCAGTGAGGAAGAAAGAGTAACAGAGGCCCATAAGAACAAGAGGCTGCAGAAAAACCTCAAGTTCCTGAGCACTGAGCTGGCTGGAGCTGTAGACGAGAGCAAAAAGACCCCCAATGACCTGATCCACGCTGAGAATGTGAAGGCGGGCCGGGACAAATACAAGACCCTACGCCAGATTCGTCAGGGTAACACCAAACAACGCATTGATGAATTTGAGTCCATGTGAGAGGGGCTGCTGTATAGGCCCAAGATAAGGAGAGATGATGAAATTGGACACATTGAGAGAATTTAGAAGTGTAGGTGCAGATCATTAGAAAATTAACCTGACAGGTTGAATATGATAGCAAATTATATTGTTACCACCTTTAATATCCTTGATTATAATGCCATTTCATCTGGAAACGAGTAAGAAGTGACAACTGttgataatacatttttaatttcataGGAACAAAAACACATGCATGTCCACTTGGGTGTTGCAAACATCATTTATGAAAAGTGTTGCTGTTGTTTGCAATGGTATTTAACGCATTTGCAATTTCATTGTGCCAAACTAataaactttattattattgattattgaaAGCAATGACATTAAAGACACTTGCATCTAAATGTTCCAAATAAAATACACATGAAACACCA

Function

GO:

id name namespace
GO:0005856 cytoskeleton cellular_component
GO:0019898 extrinsic component of membrane cellular_component
GO:0005737 cytoplasm cellular_component
GO:0003779 actin binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU138151 lncRNA downstream 106339 1634594 ~ 1662199 (-) True G102638
TU138132 lncRNA downstream 167003 1593835 ~ 1601535 (-) True G102621
TU138116 lncRNA downstream 212102 1555856 ~ 1556436 (-) True G102609
TU138114 lncRNA downstream 214996 1553327 ~ 1553542 (-) True G102607
TU138113 lncRNA downstream 215549 1552513 ~ 1552989 (-) True G102606
XR_005640531.1 lncRNA upstream 153082 1936573 ~ 1937187 (-) True LOC120567184
TU138273 lncRNA upstream 436085 2219576 ~ 2221446 (-) True G102741
TU138281 lncRNA upstream 515297 2298788 ~ 2299221 (-) True G102748
TU138282 lncRNA upstream 516182 2299673 ~ 2300414 (-) True G102749
TU138287 lncRNA upstream 524975 2308466 ~ 2310822 (-) True G102754
XM_039813362.1 mRNA downstream 1130 1750801 ~ 1767408 (-) False LOC120566744
XM_039813361.1 mRNA downstream 1133 1749773 ~ 1767405 (-) True LOC120566744
XM_039813225.1 mRNA downstream 191830 1574392 ~ 1576708 (-) True nxt2
XM_039813222.1 mRNA downstream 217911 1546383 ~ 1550627 (-) True eif4ebp3l
XM_039813220.1 mRNA downstream 228046 1529411 ~ 1540492 (-) True LOC120566654
XM_039814226.1 mRNA upstream 8137 1791628 ~ 1795122 (-) True LOC120567293
XM_039814216.1 mRNA upstream 15913 1799404 ~ 1862112 (-) True arhgef9a
XM_039814219.1 mRNA upstream 15913 1799404 ~ 1862111 (-) False arhgef9a
XM_039814224.1 mRNA upstream 15913 1799404 ~ 1831490 (-) False arhgef9a
XM_039814221.1 mRNA upstream 20536 1804027 ~ 1862112 (-) False arhgef9a
TU137926 other downstream 926992 838961 ~ 841546 (-) False insb
TU137703 other downstream 1537094 220592 ~ 231444 (-) True G102276
XR_005640447.1 other upstream 397552 2181043 ~ 2197917 (-) True sh2d1aa
XR_005640435.1 other upstream 1108928 2892419 ~ 2898545 (-) False pabir2
XR_005640589.1 other upstream 1112680 2896171 ~ 2896313 (-) True LOC120567496
TU138946 other upstream 2119500 3902991 ~ 3925309 (-) True G103268
TU138957 other upstream 2145563 3929054 ~ 3933202 (-) False smim19

Expression Profile