RNA id: XM_039813375.1


Basic Information

Item Value
RNA id XM_039813375.1
length 1875
RNA type mRNA
GC content 0.43
exon number 6
gene id zgc:101583
representative False

Chromosome Information

Item Value
chromosome id NC_053121.1
NCBI id CM020918.1
chromosome length 40300294
location 26478891 ~ 26483763 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

AACAGCCTTACAGCTTCTGGTGACAAACCGAAAAGGGGTCCTCATCCTTGGATAGCAGGCGATGCCCACAAGAAGACAACTAAACGATATTAGTCCAGGGAGTGCAGTAATGCTTTGATGGAAGTTAACCGTTTGGACTTCTACATCGGTCTGTCTCTGGCTGTGAGCTCCAGTGCTTTTATCGGTTCAAGTTTCATCTTAAAGAAGAAAGGCTTGCTGCGATTGGCCAGCAAGGGTTCAATGCGAGCAGGTCAAGGGGGACATGCTTACTTGAAGGAATGGCTGTGGTGGGCAGGACTGATTTCAATGGGAACTGGAGAGGCTGCCAACTTCGCTGCATATGCATTTGCACCGGCCACACTGGTGACTCCTCTTGGAGCATTGAGTGTACTTGTAAGTGCCGTGCTTTCCTCTTACTTTCTGAATGAGAGGCTGAACGTGCATGGAAAGATTGGTTGTTTGCTGTGCATCTTGGGCTCCACGGTGATGGTGATCCATGCCCCGCAAGAAGAGGAGGTTGCCTCCCTCAGTGCCATGGCTGAGAAACTCCGAGACCCAGGTTTCATTGTGTTTGCTGTGTGCGTTGTTGGAAGCAGCCTGGTTCTTATCTTTGCTGTGGCTCCACGTTTTGGACAGAAGAATGTGCTGGTCTACATCCTGAtctgctctgtgattggctcCCTGTCTGTGTCTTGTGTCAAGGGCCTGGGCATTGGCATTAAGGAGCTGTTTGCTGGGACAGCAGTGCTGAAGGAACCCCTGTTCTGGTCCTTGGTCATATGCCTGATAATCTGCATCAGCGTTCAAATCAATTACCTGAACAAAGCCCTCGACATCTTCAACACCTCCATAGTCACTCCCATCTACTACGTCTTCTTCACCACATCGGTCATGGCCTGCTCAGCCATTCTCTTCAAGGAATGGTTGCGGATGAATGCGGATGGAATAGTGGGAACAATTAGTGGGTTCCTCACCATCATCTTAGGGatcttcctcctccatgctttcaaggacattacatttagctgtGATTCCCTCCCACTCTACCTGAGGAAGGGTTCTCAGGGCCTTGAATGGGGGCAACAGCCTTATGTGGCTCTTCCCAACCACGAAATGCAAGCACAGGATGAGCTTAAACTGCCCAGAGAAGTAAACTCAAAGGGGGGCTGGGCTACACACCAGATAGCTCCTTAGGAGGACCAATAGCCTTGTCACTAAGGAGAAAATTTGCTAATTGCAATTCTGAAGCTTTACTGCACATCACAGCCTTACAATGTGTGTACAGTTAGTTtaataaatctgacttttgaGTCTTACACAATGCAGCACTGGATGAACAAAGTTGCCTAAAGTAAGCATAATGTTaatttaatattacatttacatttttagttgTAACATTATAGTACATCGACctctttagttaaaaaaaatcagaagtATAATTTATCATTGTGAATGTTTGTTGCACtgctgtttacatttttttttttttttttttttaacagtaggcctatattaaGTTACAAAAATGAATTGGTGTAATATTAGCCTGCATGACAGATTATGCCTTGTTACTGGAAACAATAACCTTATTTGTAGGTTTGCACTTTTAACTCCAGCATATATTGTACAAATGTATGATTTGTGACCAGtgtgaaagcaaaaaaaaaaaaaattgcctgaATGCATTTCAATCAAGTTTGAGTAATAACTCCGTAATATCATATATAAGACATATCGCATATATACAAACTGCACCAAAGATTGTTTTTTCCCTGTGTGGAATAATTCCCAAAATGTGCCAAGCTGTAACATACCTGATGTAACTaacgtttttgtgtgtttgatgaTTAAAACAAAACTACAATGTGA

Function

GO:

id name namespace
GO:0034220 ion transmembrane transport biological_process
GO:0015693 magnesium ion transport biological_process
GO:0016020 membrane cellular_component
GO:0015095 magnesium ion transmembrane transporter activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_005640459.1 lncRNA downstream 7324 26470611 ~ 26471567 (-) True LOC120566756
TU145241 lncRNA downstream 22186 26456045 ~ 26456705 (-) True G108084
TU145239 lncRNA downstream 22186 26456132 ~ 26456705 (-) False G108084
TU145240 lncRNA downstream 22296 26456045 ~ 26456595 (-) False G108084
TU145238 lncRNA downstream 22296 26456132 ~ 26456595 (-) False G108084
TU145351 lncRNA upstream 388077 26871840 ~ 26872060 (-) True G108175
TU145354 lncRNA upstream 463487 26947250 ~ 26952535 (-) True G108178
TU145355 lncRNA upstream 479503 26963266 ~ 26963583 (-) True G108179
TU145359 lncRNA upstream 524049 27007812 ~ 27008037 (-) True G108182
TU145360 lncRNA upstream 539890 27023653 ~ 27032409 (-) False LOC120566771
XM_039813376.1 mRNA downstream 18159 26458002 ~ 26460732 (-) True rpl36a
XM_039812941.1 mRNA downstream 220692 25837330 ~ 26258199 (-) True diaph2
XM_039813267.1 mRNA downstream 1046364 25366170 ~ 25432527 (-) True tnmd
XM_039813268.1 mRNA downstream 1158369 25316298 ~ 25320522 (-) True ube2a
XM_039813252.1 mRNA downstream 1188757 25284705 ~ 25290134 (-) True pttg1
XM_039813379.1 mRNA upstream 3409 26487172 ~ 26517479 (-) True med12
XM_039813382.1 mRNA upstream 35052 26518815 ~ 26569298 (-) False wu:fb13g09
XM_039813383.1 mRNA upstream 35052 26518815 ~ 26556743 (-) False wu:fb13g09
XM_039813381.1 mRNA upstream 35052 26518815 ~ 26556743 (-) True wu:fb13g09
XM_039813280.1 mRNA upstream 93171 26576934 ~ 26768932 (-) False enox2
TU145230 other downstream 18184 26457995 ~ 26460707 (-) False rpl36a
TU145117 other downstream 1190805 25279603 ~ 25288086 (-) True G107989
TU145115 other downstream 1196692 25279603 ~ 25282199 (-) False G107989
unassigned_transcript_475 other downstream 1616707 24862112 ~ 24862184 (-) False trnav-uac_15
TU144931 other downstream 1899792 24573441 ~ 24579099 (-) True G107864
TU145357 other upstream 505501 26989264 ~ 27001011 (-) True G108181
TU145368 other upstream 581655 27065418 ~ 27065947 (-) True G108191
TU145467 other upstream 774484 27258247 ~ 27262120 (-) False LOC120567151
unassigned_transcript_477 other upstream 1295370 27779133 ~ 27779214 (-) True trnal-aag_2
TU145627 other upstream 1354085 27837848 ~ 27839107 (-) False LOC120567057

Expression Profile