RNA id: XM_039813389.1


Basic Information

Item Value
RNA id XM_039813389.1
length 5471
RNA type mRNA
GC content 0.46
exon number 23
gene id ocrl
representative False

Chromosome Information

Item Value
chromosome id NC_053121.1
NCBI id CM020918.1
chromosome length 40300294
location 25147946 ~ 25165755 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

AACGACTTCCCAGAACGGGATTTGGGACCATCCGAGGAGCACGTGAATGCAGCATTAACAGGGAGAGGGACACAAGAAGTAGGAGGGAGTCCTCCAACATCTCGCTACTGTCTACTGTAGCCTTAGCTAGCCAACTAGCTCTCTTAAATCAGCCACAACCCACCAGCTATGCAGGTTGGCCAGCCTGTTTCTGGACACAGACAAGAAGCCGGAAACTTTAAGGTTTTTGTAAGAATGGCGCACACTAACCGGGGTACTTTGACATATCGACTCTGTTGAACATTTGTGCCCACGtccagcaacaacaaccacagctggcTAACAAGCTTAGCTAAAGTTAGCATTAGCGAGCAACCGCTGAACAGCTGTAATCCCGGAAGGCCGGCGCACCGGGTGGGGATTTTAACTTTCTCTCTCCGTGTCTGGACTGAACCAACACAAAGTCGCTAGCCAATGATAAATTACTATTTATCATTTATCGGTAAGAATGGAGTCCTCTTTGGGCATATGCGACGAGGAGTGCTTGGCAACGGTGAGAGTTCAGGAGCTGAGGGCTGGCCAGAAGGAGCCCAGACTACTGTCACTAATTGAGCGCAGTGGAGAGTTTATattgggtgttttggCGACCCCTGATGCTGTTGTGTCTCGTCCAGTGGCTCAGCTGTCTATACCCATCAATGGTAATTTTGAAATTGTTCGAGAGGCGGAAGAGGCTCTTCTTATTAACTTCTCAGTAGCTTCCTGCGTTAGGATACGAATCAAAGGAGATAAAGCTCCAGAGCTGCTGTTGGAACTCCAGGATGATGATCGGACTCAGACTTTCTTCACCCAGGTGAAGAGTGCTCAGCAACAAGTTGAATCCAAACTCACAAAACCCAAAGCAATGGAGCCCCTTGCAGCAACAGCCCTGAGAGGTCCGGTCCCGATCCCACCGCAAAGAGCAAACAAGACTGCTAACTCTGTGGGCTCTGGAGTCAACCCACCCAAATCTACCAGTGCTCTGCCTCCCAACCTAAACAACAGCAGGTCAACAAATCAGACTAACGCAGATCCAGTTCAATCACTTGCCTCAGACTTTGGCTTTGAGGACAACTTTAACCACGCTCTCaaagtggaggaaaaaaagaaccaCCAGAATCGCATCGTCGCCGCTAGGGAGCCTCCTCCGGTTCCCCCTCTACCTCCTCGCAAAGCCTCCTACACTCCATCCAatcctctgcctcctccaccAGTCCCTAAAGACAGAGCTGTCTCCCTACAGGCCAGAGACAACTCCAAACCAGATAGTTTTAGGTCAGGGTTTGACCATGCGGACAGGCCAACGTCTTGGAGCGAGAGCCCCACAACCAACAGCATGAGACAGGCCATGTTCTCCAGCCAGGCAGGGCAAAGAGAATACCTAATCAAACACCGCCTGGGTAAGAAGGAGCACGAGTACGTGGACATCCAGACCTTCAGGTTTTTCACAGGTACGTGGAATGTGAACGGCCAGGCTCCAGACAGCAGCCTTGAGCCGTGGCTCTGCTGTGACACAGAACCTCCTGATATTTATGCTCTGGGTTTCCAAGAATTGGACCTGAGCACTGAAGCTTTCCTCTACATGGACTCACCCAAGGAGCAGCTGTGGGTGGAAGCTATGGAGAGGAGCTTGCACCCAAAAGCCAAGTACAAGAGGGTTCGAATGATACGTCTAGTTGGGATGATGCTTGTCATCTTTGTCAAAAAGATTCACAAGAATCACATTAAAGAAGTGGCTGCAGAGCATGTGGGGACAGGAATCATGGGGAAAATGgggaACAAAGGAGGTGTGGCAGTCAGGTTTGTTTTCCACAATACTAGCTTCTGCATCGTCAACTCACATCTAGCAGCACACGTGGAAGACTTTGAGCGCCGCAACCAGGACTATAAAGACATCTGTGCCCGCATGTCCTTCCACTTACTGGACCACCCCCCTCTCAGTATCGTCAAGCACGATGTAGTAATCTGGCTCGGGGATCTAAACTATCGTCTGTTCATATACGATTCAGCTGAGGTCAAACAGCACATCTCTCAGAATGAGCTAAAAAAGCTTCAGGAGCTTGATCAGCTGAACATTCAGAGGCAGACGAAGAAAGCCTTCACAGACTTCATGGAGGGAGAGATCAACTTCATTCCCACGTACAAGTACGACCCAAAAACGGATCGATGGGACTCAAGTGGGAAGTGCCGTGTCCCGGCTTGGTGTGACAGAATCCTGTGGAGGGGCAACAATGTCAAGCAGCTCAAATACCGGAGTCACATGGAGCTGCAAACTAGTGACCACAAGCCTGTCAGTGCTCTCTTCACTGTAGGGGTTAAGGTGGTAAATGAGAAGCGCCACAAAAAGGTGTTTGAGGAGATTGTTCGAGCGATGGACAGAATGGAGAACGATTTCCTTCCATCTGTAACTCTGAGCAGGagagagTTTACATTTGGGAATGTGAAATTTCGCCAGCTTCAAAAGGAGCGCTTCCTTATAACAAACGACGGCCAGGTCCCCTGTCACTTTGCCTTCATCCCCAAACTCAATGACTCGCAGTATTGTAAGCCTTGGCTCCGTGCCGAACCAAGCGATGGATTCTTAGAGCCGAATGAGACCCTGGAGATCTATCTGGAGGTGTACGTCAGTAAAGACTCCGTCACGCTGCTGAACTCTGCAGAGGACGCCATAGAGGACATTCTGGTGCTCCATCTGGACCGTGGCAAAGACTACTTCATTACAATCTCTGGCAACTACCTGCCCAGCTGCTTTGGTACCTCGCTGGAGACTCTGTGCCGCATGAAGAAGCCCATCAGAGAGatccccatcaccaaactaaTTGACCTGGAAAGGTCAAAAGTGAGCTTCCTGATGGTGGATGGTGCAAGTACCGAGGACAAACCTCTGAAGATCCCCAAAGAAGTGTGGATTCTTGTCAACCATCTCTTCACCAAGTCCTGTGATCAGGAGGACTTGTTCCAGACACCAGGCCTacaagaggagctgcagagcaTCATCGACTGTCTGGACACCAGCATCCCAGACTCTATCTCTGGTTGTAACCACTCTGTAGCTGAGGCTCTGTTGATCTTCCTGGAGGCCTTGCCGGAGCCAGTGGTGTGTTACGAACTCTACCAACGGTGCCTAGACTGCTCTCATGACAGCCGCCTCTGCAAACAGTTGATCTCCCAGCTGCCCCGGGCTCACCGCAACGTGTTTCGCTACTTAATGGCCTTCTTGAAGGAACTTCTCAAGCACTCACACAACAACAACCTAACAGCCAGCCTCATAGCTACACTCTTTGCCAGCCTCCTTATCCGTCCGCCTCCCAATCTGATGGGCAGGCAGACACCACACGAACGTCAGAAAGCTATCGACTTCATTCTGGGTTTCCTCATGGCAGGAGACGAGGAGTAACCGAGGTTAATGGTACCTCGCGCCATCAGTCGGGTTTGGAGTTGATTCCCAGCCTGGCTTGCTGTTGGCTGAGGACCTGGACCTGTAGGACACTGTGGAACATCCACATGGTACTTTGTCATCTATTGGAGACCAGTGCCGCTCTTGCATCCTTCCTTTTCACAATCGCTCTTGTTAGCGGAACTCAAGACTTCCATTAGAGTTGTGATGATTTTACCAAGTGTTATATCTTCAGTTCGTTCACAGAATGACCACTCGCTGGATTTGTAAGCACTTGGGAGAGGTTTAAACTCATGCCTATGCACTTTCTGATGACCGAAAGGCTGTGGCTCCAGACTAAAGttgttctcctcctcagctgacCCTTCTTATTGTAGGCGCTCATGTCAAAAATATCTCTCCTGAACAGTGAGTGAGTGGtatgaatgtaaaaaaacactCTGTATCCATAGATGCTAAGCGAAAGACTCAATTACACTAAAGAAATTAAATCCCTGAAGTTTAAAGAAGTAGACTGAATAAgttaaaagtataaatagtttGAAATGGGATAATTGTGGAAAGAATGTTTAAGCTTAAGATAAATCATGACAATCATTCATTTTAACTGAGGGGACAATATTATAGATATCATTAGGACCTTTTTGTTACCATACTGATTGTATTATAactgttatttaaatatttttcatcTAAGTTTGCACCATGGGAATGGTTTCTGGTTCCTtctacagtatgttttttttttttttttaagctctgAATTGGTTTTAAAATTTTCATCGCTTGTTTTTATCATCCTGTTATAGAAAACTGTCgtgaatgtttttatgtaaatcCAGCTGTGAGCCTCACATCTCTTTTTGCCAGTTCCTTATGAGTTACAAAACAAGTCTGTTAACACACTAACTTCCTGGTCAACCGGAATCGAGCGAACCTTCACCCTCTGTTGTTCTTAATTTCTTAAATAGTGTAAATAGTGATTGCTTCTCTGGGTATGTCATGGGTATTTGACTGTCGGTATGGTGACGCAAATCTGTGATGGCGTCTTACGTTTTGTCATGTTTGTGGTACTGTtgatgtctgtgtatgtttacacgTCTTTCCTCACTTCTGCCACATAATTTTTCGTTGTTTTAGGCCTGTGTTGCCAAGACACTGCTGTTGTGTTCCTCGTGGTAAATCCAGATGAATAGTACTCTTGCTTTACGTGATGCAGCACTTTCTGGGTGTAAGATTTAATGGCTCATTACTCTGCAGGGTACAGCCTGTCTTTGTGCACCTTTCTCATTTGTGCCAGTGAGGACATTGTAGTCAGTGTTGAAAAGacatgtcattgttattgaaaTAAGGAACTTAAGCTGTGTATAATGAACAACATTTCCTCCTTTTAGAGTTTTCCCCAAGATATGTCAGCATTAGCTTTCCCAGTTcacaaaaatattcacatttatgaCATTAATTTCCCTTTGCTCAGTATCTCCTGTAATTTAGTGATGTCAGAGGATTTCTTCTTAGATGCGCCGGGAATTTGAGAAGATTTAATGTTTGGAGACATTGTGAGCACATGATGTAAGGTGGCCATACTGACAATCATGGCACGTATAGAAAAGCCGGTCGGACTGAACTTGCTCTGTTcttgcatattttttttcttctgccttATTGCCATCAATACACTAGATTCCTCCGTTAGTCTTAATCAAGCTGCGCTTTGCCAAAAGGTGGCTTGAGCCTGAATGAATAGTTCTGGGGATTCAGATTTGGGAGAgccattttacatttatttatttattcattttgtctTTAGAAATACTATCCTCAACATGTCAAACAGGAAATCAATATAATCAATAACCTCTGATTTTATGTGTTGTCTTATGCCACTGTACCAACTGATCcctttgtgttttttgtcttcAATTTTGTCACAATCTGTTCATAAAATTAAGGTACATTTAAAGGTACGTGAGGAAACAGTCGCACCTGTTTTCAACTTTACAGATATTTGgtgcttttaatttatttaacagAAATAAAACTATGTATGAAGCAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU144993 lncRNA downstream 74114 25073181 ~ 25073832 (-) True G107907
TU144988 lncRNA downstream 167149 24977124 ~ 24980797 (-) True G107903
TU144967 lncRNA downstream 257230 24890301 ~ 24890716 (-) True G107890
TU144966 lncRNA downstream 262519 24885009 ~ 24885427 (-) True G107889
TU144965 lncRNA downstream 263690 24884000 ~ 24884256 (-) True G107888
TU145020 lncRNA upstream 15183 25180938 ~ 25186478 (-) True G107923
TU145024 lncRNA upstream 15183 25180938 ~ 25186478 (-) False G107923
TU145077 lncRNA upstream 97424 25263179 ~ 25264862 (-) False ndufa1
TU145122 lncRNA upstream 125862 25291617 ~ 25297266 (-) True G107992
TU145172 lncRNA upstream 482779 25648534 ~ 25648780 (-) True G108031
XM_039813392.1 mRNA downstream 88 25130146 ~ 25147858 (-) True vimr2
XM_039812669.1 mRNA downstream 134056 25000755 ~ 25013890 (-) True xpnpep2
XM_039814432.1 mRNA downstream 154642 24983493 ~ 24993304 (-) True sash3
XM_039813955.1 mRNA downstream 200519 24943448 ~ 24947427 (-) False trmt12
XM_039812586.1 mRNA upstream 1466 25167221 ~ 25172840 (-) True si:ch73-335m24.2
XM_039814043.1 mRNA upstream 20834 25186589 ~ 25189449 (-) True urp1
XM_039813249.1 mRNA upstream 32563 25198318 ~ 25200515 (-) True mcts1
XM_039814350.1 mRNA upstream 67431 25233186 ~ 25238614 (-) True atp1b4
XM_039813585.1 mRNA upstream 87010 25252765 ~ 25257632 (-) True zbtb33
unassigned_transcript_475 other downstream 285762 24862112 ~ 24862184 (-) False trnav-uac_15
TU144931 other downstream 568847 24573441 ~ 24579099 (-) True G107864
XR_005640439.1 other downstream 1255645 23886824 ~ 23892301 (-) False rab41
unassigned_transcript_474 other downstream 1773938 23373936 ~ 23374008 (-) True trnaf-gaa_66
TU144162 other downstream 1960935 23184272 ~ 23187011 (-) False rnaseh2c
TU145115 other upstream 113848 25279603 ~ 25282199 (-) False G107989
TU145117 other upstream 113848 25279603 ~ 25288086 (-) True G107989
TU145230 other upstream 1292240 26457995 ~ 26460707 (-) False rpl36a
TU145357 other upstream 1823509 26989264 ~ 27001011 (-) True G108181
TU145368 other upstream 1899663 27065418 ~ 27065947 (-) True G108191

Expression Profile