RNA id: XM_039813392.1


Basic Information

Item Value
RNA id XM_039813392.1
length 2330
RNA type mRNA
GC content 0.48
exon number 10
gene id vimr2
representative True

Chromosome Information

Item Value
chromosome id NC_053121.1
NCBI id CM020918.1
chromosome length 40300294
location 25130146 ~ 25147858 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CTTTAGGTACATGTGAAATCGTTACCGGCTGATGTTGACCGTATATTTAGTCTACTCAGTGGCCGGTGAGAGATCCCTCACCTCAGTGCAACATTCTCATTCACTGTGAATATAAAACCCCCGGCTTGGACCTGCTGCCACTATTTGCCTGTTGTGTTGTAGCCCAGTTTCAACTTATTCAAAGCCATGGCCATGCTCAGAGTGTCTTCTTATCGCAAGCTGTTTGAGGATGATAGCTGGAGTCGAAATGGAGGGTTAAGTCTGCAGTGTGCAGGGCAGTGCCGGTCCTCTGTCAgGGGTGCGGCCGTTAACAAGTGTAGCTGTGACAAGTTAGACTTTGTAGCTGCCGAGGCGCTCAACAAGGAGGGTCTGAACCGGTTTGTCCAGGAGCGCAACATCATCGCAGCCCTCAACGACCGCCTGGTCAGGCTTATTGAACTGGCCCATTGTTTTGAGGAGGAGAATGATTCTCTTGAATGTCAGATTGTTGAACTAGAGGAGAAGCTGAACAGTCGACAAGCCTCCTCCAGCATCACCTCCACTGTGGCCGAGCCTGACTACAGTCTggatgcagtggtggaaagacTGCGCAGGGAGAGGGATGAGATTCTGTGTGacacagaggagctgcagaaagAGCTTGAACGTCTGATGAAAGAGTACGAGAAGGCTGCACAGCAGACGGTCATCCTCCAGCAGGGACGACAGGAGGTTGCTGAGGAAGTCGATGCTGTGACAGCAGAGTGTTTGGCACTGAGGGAGCAAGTGGCTATCTACGAGGAGCAGCTGGCCAACATGGAGGCCCAGCACACAAcgGAAGTGGAGAATCTGCTGGAGCCAGCTGAAGGGGCTACAGGAGCAGTGGCAGCTATTACATTTGGCAGCCCTGACATCACTCCAGCCCTGCTTGTAAAAGAGTACTACTGCCAGCTGGCCGAGAACCTCCAGTATGAGTGTGGTGCATCCTCCTCCGCTGTGGTTCACAGTGGTGATGGAAAACAACTGGAAGTGGGGGAAGCTGGAGGGTCAACAGTCAAAGACTTTTCAAAGATAAACGACATCAATGAGCTGAAGATGCTGATTTCAGAGCTACAAAAGGAGCTCTCTGAGCTGGAGAAGTGTAACGAGCAGCTGGAGGACGAGGTTGAGATGAAGACGGCTGCATTTATTGACGAGATTGCTGAGTTGGAGtgtacTATTGATGAAATGCGGCACCAGGAGGCCGACTTCCAAGTGCAGATGAAGAAGCAGTGTGAAGACTACAAGGAGCTGCTCAGTGAGAAGATGGCCAGAGACATGGAAATTACTGCTTACAGgagtctggtggaggaagaggaggagcgcCTGTGCAAACTGTGACTTGAGGCTGGAGAATCAGACTGGCAGGCTGGATACTCCCCCCACACATGGATTAGAAAATAGACCAAAGAGAAACGTGAAAAACACACCGAAACCAGCACTAGGATGAAGCTTAAGGTACCAATGCAGCAATTTAAGCAGAACTTATCATGACCGATTAATACCGTCTGGAGACCTAAGCGGGGCCATTGATAACAGATCGCTGGCAGATGACCCCGAGACTCCCAAGAAAGATGGAGCTGTCTAAAAGAGGTGGGAGGATGGGGTCTGCGCAATGAGTGCGTATCCATTCAGTGTCTGGCAGGGATATTTCCTTAAGTGGGTTTTATCTTTACCAGCTCACTGCTATGATTCATAAATGTGTTGTCCCCTCTTTGTTGaacaagtcacacacacacacacacacacacacacacacacacacacacacacacacacacacacacgttaaacTGCGGCTCTGTGAAGTCATCCCCCTCTGATACCACCTCATCCATCACTCAAACGTTGTCTGATTACCAGCTCTTAACCCTTGACCCCATCACTGTTAACATATTGACAGTTCTCCTTTTGGTAACTAAAAGCATCCCACCTTCCCTTTGCTTTTACAGTCATgcattcatgttttgtttttacatataACTGACAGTCAAGTGTGCAGTGCACTGTTTGCTTTTCAAATGGTTCAtgaagttgttgtttttctgcagcTCTTACAACATGAGCACCTGGATGTTTCTACAAGAAAAAGTCTGTATGATTCATTATTTCTCCGTTAGAAATCAATGATCCAATTGCTGTCATTTTTAGAAATAAGCATTCTGTAATACATTCCTCtgtaatctttttattttccacatGACATTTAAGCTGTCTGTGATAAATCATTGTTGGTTCCCACTTCTGCACAAGCATCCGCATGTGCTTTAGatttaaattgaataaaactaaTTGCTTGAGAGATCACCTCA

Function

GO:

id name namespace
GO:0005882 intermediate filament cellular_component
GO:0005198 structural molecule activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU144993 lncRNA downstream 56314 25073181 ~ 25073832 (-) True G107907
TU144988 lncRNA downstream 149349 24977124 ~ 24980797 (-) True G107903
TU144967 lncRNA downstream 239430 24890301 ~ 24890716 (-) True G107890
TU144966 lncRNA downstream 244719 24885009 ~ 24885427 (-) True G107889
TU144965 lncRNA downstream 245890 24884000 ~ 24884256 (-) True G107888
TU145020 lncRNA upstream 33080 25180938 ~ 25186478 (-) True G107923
TU145024 lncRNA upstream 33080 25180938 ~ 25186478 (-) False G107923
TU145077 lncRNA upstream 115321 25263179 ~ 25264862 (-) False ndufa1
TU145122 lncRNA upstream 143759 25291617 ~ 25297266 (-) True G107992
TU145172 lncRNA upstream 500676 25648534 ~ 25648780 (-) True G108031
XM_039812669.1 mRNA downstream 116256 25000755 ~ 25013890 (-) True xpnpep2
XM_039814432.1 mRNA downstream 136842 24983493 ~ 24993304 (-) True sash3
XM_039813953.1 mRNA downstream 182718 24943448 ~ 24947428 (-) False trmt12
XM_039813389.1 mRNA upstream 88 25147946 ~ 25165755 (-) False ocrl
XM_039813387.1 mRNA upstream 88 25147946 ~ 25165755 (-) True ocrl
XM_039813390.1 mRNA upstream 88 25147946 ~ 25165315 (-) False ocrl
XM_039813391.1 mRNA upstream 88 25147946 ~ 25165085 (-) False ocrl
XM_039812586.1 mRNA upstream 19363 25167221 ~ 25172840 (-) True si:ch73-335m24.2
unassigned_transcript_475 other downstream 267962 24862112 ~ 24862184 (-) False trnav-uac_15
TU144931 other downstream 551047 24573441 ~ 24579099 (-) True G107864
XR_005640439.1 other downstream 1237845 23886824 ~ 23892301 (-) False rab41
unassigned_transcript_474 other downstream 1756138 23373936 ~ 23374008 (-) True trnaf-gaa_66
TU144162 other downstream 1943135 23184272 ~ 23187011 (-) False rnaseh2c
TU145115 other upstream 131745 25279603 ~ 25282199 (-) False G107989
TU145117 other upstream 131745 25279603 ~ 25288086 (-) True G107989
TU145230 other upstream 1310137 26457995 ~ 26460707 (-) False rpl36a
TU145357 other upstream 1841406 26989264 ~ 27001011 (-) True G108181
TU145368 other upstream 1917560 27065418 ~ 27065947 (-) True G108191

Expression Profile