RNA id: XM_039813393.1


Basic Information

Item Value
RNA id XM_039813393.1
length 5869
RNA type mRNA
GC content 0.50
exon number 19
gene id si:dkeyp-115e12.6
representative True

Chromosome Information

Item Value
chromosome id NC_053121.1
NCBI id CM020918.1
chromosome length 40300294
location 23285319 ~ 23308063 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

ACCCTGCCTCGGCCTCGTGCCACAACGACTGTTGGCTTGTCAGCTGAACTGGACGCGCTGGTCCTTGTCTAAGAAGATATGAAAACTGTCAGTTAAGGTCAGTTGTTCTGGTCAAAGAAGAAGAACTGGGGGCTGTTGATATCAGAGCAGCGTCACGGGTCTGCGCCTCCCTGGCGGCTCGCGCCCTTTGTAACGTTAACTCTAAAGTGAATGACTGTGTTTGCTGGTTGCTTTACTCCAGCTACTGACTCCCATGGCTCCAGGAACTTCCTGATTCTGGATCTGTCAAGCAGTAATAGGACAGGCCCAGGGAAAGAGAGATGAGCTGGGCTGAGGAGGACTGGACGGTGGGGCTGTCTGGACGGGTCCTGCAAAAGGTGAAGGAGTTGCAGGTCCATCAGGAGCGACTGTCCAGAGAGAACAAGCAGAAACAGCTGCAACTGGACAACATCCATACAAGCCTCGAAAAACAGACTGTCAAGTATGAGGAGGTCCGTGGGGAGCTCCAGAGTCTGCAAAGAGAGCTCCAGAGTGTTCGACAGGAGGCCAAGGCAGCAGTGACCAGCAGTGACCGCCTGACCCAGGAGCTCCAGACCAAGCAGGCCCAAGTATGCTCTTTGGAGGGCCAGCGAGATGCTGCTCGAGCCCTCAACAACAAACTCACCCAGGAAATCAAAAGGCTGGAGGCAGAGCTTGAGAATCTGCAGAATAGCAGCAGATCGGCAGATACTACTCTGTTTTCTACACCCTGCTGGAATACAACCTCACCCTGGGAACACACTGGGAGCAGGAAGCAGGAGAGGCCAGGGCATAGAGATGAAGGACAGAGCCGGGCGCTTCACATCCGACAGCAGCTTCAATTCTCCGAAGTAGGCACAGCCTCGTtaccacaacaacacaacaacaacacaccccACCGCCATCCGTCCAACCAATCGGACACCTTCTCCACTCCCTTGTCTGCATTTCCGTGGGAACGGGATGACTCGAGGCCAGCAGCCAGGAGACCGTCCCCCTCTGCTCCCCAGACGCCCTGCACTGATGTCATCAGTAAAGGCCAGCAGGAGCAGAGGGTTTATGGGAAGGAGAAGGACCacaggacagagacagacaCATCTTTATCAGAAGTGCGGAGTCGTGTAGCTGCTCTGGAGGTGGAGCTGTGTGCGAAGGCCGGGATGTTGAAGTCTATTCAGAACGAAATGGTGCAAAGCAAAAAGGAGCTCACAGCCAGGGAGCTTAGCCTTCAGAAAGCCCGCGACGAACTCAGCCTGGCACACACAGGCATGGCCCAGGAGAGAGAACGGGCATCAGGATGTGAGCAAAGGCTGAAGCAGCTACAAGAGGAGCTGAAGTGTCAGAGGCAAAATGCAGAGAGCAGCCGACTGCAACACCAACAACGCTCTAAGGAGCTGGAGAAACAACATCAGAGGGATTTGACGGAGCTTCAGAAGGAGAGGCAGTGTCTGGAGAAGCAGCATCAGCAGGAAGTGAATAAGCTCAACCAGGAGCTCCAGCAGGCAAGGACGCTCCACAACGCCCTGCAGGCCCAGGCTGACAagCTGTCTCTACAGAAGCAGGTGTTGGACAAAGAGTTGGACACTCTGAAAGAGAAACTAAAGTGGACGGAGGGGCAGCTGCAGGAGAGCCAGAAGAAAGAGGCACAGAGACAAGCCAAACTGACGGAAGCCCTGCGTGAGGCAGAGGGTGTGGCAGTGAGTCTGGAGCAGAGCAGGAAGAGAGAGCAAGgtctggaggaggaggggaggagactGGCAGAGGAGCGAGCCGACACCCTTCGTCTTCTCAAAGAACTGCAGGAGCAAAAGGCTGTCCCAGCACCCCCTCAACAATCTGTCCAGTTTTGCCCCGTTGGACAGAGTTTCTCCCCTCAAACTTCTTACTCTCTTCATTCTCGACCATCAACTCACATCAAGGGGCCCAGCACCACCACCCTAGCCGAGCAGAAGAGGGAAGAGGATGTGGATAAGAGAAGGGTAGAGATTACAGCATCTTACCCCTCTGACAGAGAGCCGGGAGAAGGCATCGACTCGGAAGACATCAGCAACCTTATCGCCCCAGTCTCTGAGTGTTTACAAAGGAGACACAGAAGAAAAAGTAACGAGGAGAACAAAAGTAGAAATGAGGCGATAAAGAGTGACAGCTCTGGGACAAACGAGCACTCCACATTTGATCAAGTAATCTCTAGTTCCTCTCACTCTGCTGCTGGTACGCCCACTAACACCTCTATGGATGATTCCTCTAAAAAGACTCCTTCTCTCAAGGCCTCTGAAGACCTCAAAAGAGAGAATGCCACACTGCGTTCAGAGCTAAATGATGCACGTGAAGAACTGCAAAAACGACTTGAGGACCTAGAAGCCCAACGACAGGCCGAGACAGAAGCCAGGACCCGGCTCAAACAACTCAGCCGCAAACGTGCCAGCCAGGCTGTGGATAAGGACGAGCAAGAAAAGGAATGGAGGGCACAGCTGGAGAGTGAGAGGGCTGAGACAGAAAGGTTGAGGAAGGCCATGGCGTCATTGGAGACAGAGATGaaaagagaaagggaggaaaTAGAAAGGAAGGagcgagaggaggaggaggaggaggaggaaaaaaacaaagcactAGAAGACCGGGAGAGTAAATTGATAGAACTTAATATCCAGCTAAAGAAACAGCTGTCAGAGGTGAAAGCCCAGCTGGCTTTAGAACAAGAAGagcgaaagagagaggaagaggaaagaaaccaattaacaaacacagacatagaTGTAAAGGAGGAGTTGAGCACAAAACTGGAAGAACTCAAAGCTGAATTGGAAGAACTGAAGTGCAGCAGAGAAGAAGACTCACTGGAAGAGGAAAAACTCTCCGTTGCCAACAGCCCACTGACATACCTGACACTCCATGATGATGAGCTCAACTCCAACATTGTTCGCTGCGACAACAAGCTCCTCCCTTCGCCAGAGAAGCACCTCCTCTTCTGCCAGTCCACCAACCAACGCAACATGCTTGTATCTCAGGCCACAGCAGACCTCATCCAGGAAGAGCGAACAGTGATAGATCCAGAATGCTCAGCTCTGGAAGACGACAGACAAAACTATCTGAAAGGGTCTTCCCTGTCAGACCACAAAAGATCACTTTCTGACCTCCAGAAGGTTGAGCCAGCCTTCTCAGATTTGGCAAAAGAGGTAGAGCGCCTTAAGAAGGAGAATACAAAAGAGATAGAACGTGCTAACCAGTACCAGGTTAAACTGGAGGCCCTGCAAAGCCAGGTGACATGTCAGACAAAGCAGCTAACCACGGCTTTTGAGAAGCAGAGTCAGTACATCTCTGGTCTTTTAGTTGAGCTGCAAGAGAAGGAGAGTGCCCTCCTTAGCCAGGGAGAGGAACTGCAGCGCTACAAGCAAGAGCTGGATGCACTCAAGGCTGAAAAAGAGGGAGCGGATAAGAAAAGAACAGATGAGATGACTGTCAAAGTGGTGGAGGAtggagaacaaaaaaaagagacacaagaTGAGAGGTTGGTGGAGAACTCGAGGCTTCAGGCAAACCAGGAAAATAAGTGTGCTGTCAACCTGCTTACTACAAACTCTCTGGCCGACGGTGACTCTGATGCACAGAGAGATGCAGGTCAACTAGAAATTGTTACATCAGATGCTGAAAGACCAGCACCCAATGGTGATGAATCAGACAGTGAAGCCCTATGGTCAGGGGAACAGCATCCATGCGCTCAGCCCAAGACTCAGAGTAACAATGACTCTGCTTGTGTCATGGGTGAGACTGAGTGCAGTCAAGATGGAGAAACCACAGACGTGGTTGCAGAACTACTTGCTCTCCGACAGGAGAATCAGCTGCTGAAACAAAGAATAGAGGGCTTGACTGTCTCAGACACCAGGAGACCATTATTACACGCTGACAGTGAGAACCAAGAAGACCCAGCCAAGCAAAGCCAAAACACAGGAAATGCTGCTCTGTCCTGCTTGGTGGAGCACAGGTCACCCAGTGTGCCGAATGACATCACCACTGACGCACGGCAGTCACTGTTGCAGGATGTGAAAATGAGGGAAGATGGGAGGACTACAAAGGCTGAAGAAGAGCTGGAGGCAGTGTCTGAGCTTCAGATCAACCGCCTACAGCAACAGgtggaggagctgcagatGAGGCTACGGACTCTCTCTGCAGAGACCCAGCAGCAGGCCGGGGAGCTTGTTATGTGGAAACTGGCCTCCCAACCAGCACCAACATTCGACCAGTTCCTTCCCAACACAGACAAACTGAGTGAGACCCTGGACCAGATATCCGCTGTCAGACAGTCACAGTCAAACCAAAAGACTGGCCAGGTTCAGGCTTCTTACCTCGGTGTTCAGGAGAGCCCTAGTAATGTGACAGTCGTCAGACAAGATGAGTTATTCCTCTCCTGCCCCTCCAACAAACTGCAGGGTTGCATGTTGTTCTCCAGGCTTCAGCACAGCAACCTCCTTGAACCAAAGAGCCCCCATCGCTCTAAAAAGACTGCAGCACTTTTGGAATACGATCAGGACTCTGCCACACTTGACAagGAGTCTGAAAAAGAAAACCTGGAGATCAATCTGTTACATCAGTTAAATACCTGTCAAACGCAACacaaagaggagagagacactGAAGTTATTCAAATGTCATCTGAGAAAATGGGTCAACCACATGCCACCAAAGATTCCCACAAAGTCACAGGACCAAAGCAGACCAAATCAGCTGAGTGTTACACAGGGAATCCTGAGGCCAAACCAGATGCTTCCAGAGCAACCAATGAAATAAATCCAACAAACAATTCTTCAGACAAATATGTCAGGGCAGAAATGAAAAGTGTCAGCAGTCAAACCGAGGAGAGTTTGTATCCTCGCAGTGCTCCAACAGCCTCTGAACTCTACtgtgcatacacacagactgaggaggaggagaaagctGAAGAAGAGTTAGTGGAATCACCTCCTATCTCTCATGTCTCTCCTGTCCCATTATGTGAGGGGGCAAAGTTAGGAGACAAAATGTTGTTTTCGGGTTCCTTCCCTATCCCGGCTGACCCGGCCCATCTGGCTGAAAGAATCCGCCGTAACAGGACACAGCTGTCAGCCGCCTTTGACGACACAGAGTATGAACCGTATGGACTGCCGGAAGTCGTCATGAAAGGTTTTGCCGACATCCCCAGTGGTCCCTCGTGCCCCTACATTGTGAGAAGAGGTCTGTTAGGCACAACTGCCGTACCTGTTCCTCCGAAAGACCCGAGacaggaggaagagacagaTTAAAACACAGTTACAGAACTGATCACTGAGGCTTGACGATGAACCTCAGTGATGGACGACAGCAGCCATACAGGGACACTCCAGTCACCAGCAACCTGAAGTACTTCAGACCTTCAAACCAACACAGGACCAGTTTTAAAAAGGGTGCTGCTATCACACATGGACTTTTGTGTATGTGCAGGTAACTGGGTCTGCATTGGCAGAATAAACACTTCCATTGTGTGGTCACTAGTTTATCCTCTAATTGCTGCGTGGAgactttgctgtttttttgccATCACAATGCTGTCACTTTACACCCACTTTATATTTAGGTACAGAGGTATTGATTTAGTGTTGCTTGTTGATGTTTATTTGAAGTTTACAACCACTTTTCCAAAGGGATTGTTTAGTTTTGAGTGTCTCTGCATTAACTTATGGGTCTAGCTGCAGCCTACTTTGAATAAAACAGTGCCTAGTGGATGCTTTTCTAAACAAGTGCCTGTCAAGATAAGTGTGACTTGTTTTCCCAAAGGGTGAAACCAAGAGAGGCCTGTTGTgaaaatgtttatatatatatatatatatatatatatata

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU144202 lncRNA downstream 21420 23242037 ~ 23263899 (-) False G107324
TU144201 lncRNA downstream 41379 23242037 ~ 23243940 (-) True G107324
TU144152 lncRNA downstream 60863 23170148 ~ 23224456 (-) True G107282
TU144160 lncRNA downstream 103602 23179692 ~ 23181717 (-) True G107290
TU144149 lncRNA downstream 111901 23092565 ~ 23173418 (-) False trpt1
TU144586 lncRNA upstream 483996 23792054 ~ 23792502 (-) True G107610
TU144596 lncRNA upstream 576539 23884597 ~ 23988901 (-) False rab41
TU144597 lncRNA upstream 576539 23884597 ~ 23971180 (-) False rab41
TU144595 lncRNA upstream 581847 23889905 ~ 23892263 (-) False rab41
TU144657 lncRNA upstream 891441 24199499 ~ 24259346 (-) True G107667
XM_039812879.1 mRNA downstream 2663 23266914 ~ 23282656 (-) True kcnk4a
XM_039812887.1 mRNA downstream 98261 23184192 ~ 23187058 (-) True rnaseh2c
XM_039812886.1 mRNA downstream 108293 23172848 ~ 23177026 (-) False trpt1
XM_039812885.1 mRNA downstream 108293 23172848 ~ 23177026 (-) True trpt1
XM_039812864.1 mRNA downstream 129976 23051417 ~ 23155343 (-) False macrod1
XM_039813670.1 mRNA upstream 7780 23315838 ~ 23322957 (-) False stx5a
XM_039813669.1 mRNA upstream 7780 23315838 ~ 23322957 (-) True stx5a
XM_039813519.1 mRNA upstream 20192 23328250 ~ 23344198 (-) True vegfba
XM_039813520.1 mRNA upstream 20192 23328250 ~ 23342443 (-) False vegfba
XM_039813521.1 mRNA upstream 20192 23328250 ~ 23341381 (-) False vegfba
TU144162 other downstream 98308 23184272 ~ 23187011 (-) False rnaseh2c
TU144153 other downstream 108319 23175691 ~ 23177000 (-) False trpt1
unassigned_transcript_473 other downstream 119891 23165357 ~ 23165428 (-) True trnaw-cca_12
unassigned_transcript_472 other downstream 123860 23161388 ~ 23161459 (-) True trnaw-cca_11
unassigned_transcript_471 other downstream 124389 23160859 ~ 23160930 (-) True trnaw-cca_10
unassigned_transcript_474 other upstream 65878 23373936 ~ 23374008 (-) True trnaf-gaa_66
XR_005640439.1 other upstream 578766 23886824 ~ 23892301 (-) False rab41
TU144931 other upstream 1265383 24573441 ~ 24579099 (-) True G107864
unassigned_transcript_475 other upstream 1554054 24862112 ~ 24862184 (-) False trnav-uac_15
TU145115 other upstream 1971545 25279603 ~ 25282199 (-) False G107989

Expression Profile