RNA id: XM_039813520.1


Basic Information

Item Value
RNA id XM_039813520.1
length 4344
RNA type mRNA
GC content 0.42
exon number 8
gene id vegfba
representative False

Chromosome Information

Item Value
chromosome id NC_053121.1
NCBI id CM020918.1
chromosome length 40300294
location 23328250 ~ 23344198 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

cctacagcacctttaatgttaCTGAACAGACACAAGAGTGGTGTCGATCTTCTCATCCAATggCTCGCTCACTGGCGGCCGGCAGACTCCCCAAAATCCAGGGAAGGTCGAGAAGTGCGACGGTGGTTGGAGGTTTATTCGCGGAGCGGCTGTGAGCCTCGGGACACTCTGGTGGAGGTTTGGCAGGAGTTGCCAGGGGAGACGCACCATCTCTTCGTCCCATCCTGTGTGTCGGTGAGGCGATGTGGTGGCTGCTGTGCTGACGAGGCCCTGGAGTGTGTTCCCtcgcttacacacacactcacgatggagCTGATGAGAACCTCCTTCATGAAACATGAACTCATTGAACTGCCGTTCGTCGAGCACAGCCAGTGTGAGTGCAGATTAAAAGATCATTTCCAGCCAACACCTACAACAAGGCCCTATCTGAAGCCAACAAGAACAGacaagaaaaaggagagaggaaagtcCAGACATAAGACAGCTGGAGCCATCAGAGCTGCGACACATGCTCCCCTACCTCTTCCTCCcccatcctctcctcctcctccatcactTCCGCCCACCAGCCTCGCTCCCTCTCCATCGCCATCTCCGAGGCCTAGTTGCCGACCCTGTAGAGGAAGAAAGTGGGCGCTGAATGCAACGTCTTGTCAGTGCAGCTGCACCATCAGAGCTGAGAGCTGCAGCCGGAAAGACCGGAGGCTCAACCCTCACCGCTGCAGGTGTGAGGCCATGAGGACTTGATGTGTCCACTGACTTATTTTTCACCTCCTTCTTTCCACCAACCCTTGTTGATTCATCACCCACTCTCAGTGCCATGTAGCATACAGACGCTTGGACATCCAGTAACCTCAGAATGAAGGAAATATTCGCGGAAGCACCCACAACCTGTAGAAGCGCTCTTAGTTAAGCAACACGTGCATCGTAACAGCCTAAATATcaatctatgtgtgtgtgtgtgtatgtgtgtgtgtgtgcaatcaAACATGTTACTATCGCCTCTGCTTCTGCGAAAAAGCCTCTGTCAGTCCACTTGTGCATGCCTGTACAGACATGTAGAGTCAAAAAACACATCCCATGAGTGGAGGGATGACAGGCACCTTAATGGCAACTTTGAGAGACATGGTTTTTAGACAATTCATTCTTGGTGGACATAATTACACAAACTCCTGCTCTGCTGTGGTTTGGGGGTTCTTTAGGTCTGCAGTTGAACTTAACTACTAAGTTAAATACTATTTAAGAACAATGGATATAAAGTGTATCAGTCTTACACAGGGGTTCTTTGTGTCAATGCTTCAGTGGAAGTTGTAATTTGTTGTTCGAAGACAAACTGCACATGGAGATGGATTCCAGGGTGGAGTCAAAATTTTTGTGCGGAGGATTTGAAAAACAGCGGCTACAGATTATAGATGGACACATCCACACTCAGACACAACCGAAGAATATAGGACATGGACATGAACTGGCACCCCAGTGTGCGTGGACCTATAGTTGAGCTGAATACTGGGATGGAGAGTATCTGTGTGGTCTCCCCACTGAAAGACCCAGATGGGATATCCCTGCAGCCATCTCTTTCATTCAAATCGTATGACCACGGGCTGGCTCTCCAAGCCGCTTTCCGGCATTTGTTTAATTTGGGCCTTTTGTCTCCATCTTCCCTCGGCTCCTCGATTGAAAGCAGCCGCTTTGCCTCTCTTTGCCTCTCTTTTAGGCAGTGAGGAGAATGACAATAATGAGGCCTGGCGGCTGTCTACTgcttcacacattcacacttatAATACCAGGAACACAGACAACAGTGCAAATGCAGAAAGACACACAATCTCACTCACTCTGTGCTATAGCACACATACAttcatatttacacacacatagaatgTGTAATGAATGCAGGTAGCCATAAGCATTTGTTTGTGCCACACCAAGTGTGCAAATATATGTCAGTTATTGCAATTTACTGCAAAgtcttcatttaatattgtattatatgcctctgttttatattttattataattctGTCAAGTTGATTGAAAGATACTCTATATTGCtgaatgtgtgtctttgttttgtttgttcatcTTTAATCCGTCTGCATAAAGAGTCAAGCTGGGTGGCCGGCTATTTATACACTCAGCAGCTAAACCGATACCCAAACGTATTGAATTTAAACAGACACGGCTAACACGGGCCACAAATGGGAGACTATATACATCATAATGTGTAATTCAAACAATCAGTGGGGCAGTGTTTTCCGCAGCACACAAAAACCAAGCAAATAGCCGTTCCCAGTGCAGTGAAGGAAAAAATGGCTGTTTTTGTTGCATGTTAGAGCCGGGATGGAAAGAGTATTATTCATTTGGAACATAACTTTTGTTTTCTGACTGAATTGCACGGTTTAACTCCATGTTAGTTCATGACTGCATGGATGCTGGGTAGGAACAGGGATTTGAACTGTGATTCAGTTTCAGAAAGGACAAAGTCTTGAGCAGCATGTCAGTCAGAGTGACAGGCTAAAGCCAGAGCTCAGAGGACCCATTATGATGGGTCATGGAGTTTAAACCCATTTTTGACACTCATTCAGACCATTTGTTTTGTGCTAAATTTGACTCAGAACATTACCAGTGACGTTGTATCTCCATGACAAACAGTAGCTTTGAAACTCTATAATTCATGTCTGTACTCTCCCCCAGGATTCATACGATCCTGCTGATTGAAACTGTCCCAAAATCCTAAATTATTTGTGTGTCAGTCTTGAGCTAAATAACTTTGTTTCAGGGGCTGGTGTGATAAGCTCTGTATTTATACTCTCCTGAGATGAGATTATTTTTATTCCTTGCTTGAGTCCATTGTTCAGTGTTTGTTATAACCATCAATCAATGCTTCAATCACTACCTCTATATATCACAACATATTAATGACCAAGTATTATTGTTACTTTCTCTGTGTTATGTCAGACCTCTTTTAAgataataatgtttttatttacatttagcaATAAGCATAGTCTCCAGTGTAGAGATATGGAGCTGCAGCAGATCTGTAGTGATTATCACTGGTTTAGAGGAACCTATAGGAGTTTTCTGTGTGCTTCTTAATAAACTGAAGGGAAGCATTTTTTTCATATGAGGAGAACTGAACTGGTCCTCTGAGTACAGACCAGACACTGTGTGATAATGTGGAACAGGAGATGATTTTCCCAAAGTGTTTGTAGCCTAAAACTACTGGTGATCTTggctttaaaggaatagtttgacattttgggaagttCACTTATTCACCTTCTTGCTgagaattagatgagaagattgataccactctcatgcctgtacagtaaatatgaagctagagcCAGCAGTCATTTAACTTAGCTtggcataaagactggaaacttcCAAAATTCCAATTTTCCATCCTTCATTTCTTGATAATGTTACATTTTGTGAACAAATGTTTTGGGTAACCTAAGTCCCTGAACCTCAGTATAGTTTGCACTTGTGTTTGAGATTGCAAagcaaatactgtacattagcTCACTAGGGGGgggaaatagaagaaaaaactgaAGAAGTTAAAAGCTCCATTCAAGCAGACATGTACGACACATCGAAGACATTCCACCTAAAAGAGTTGTGGTGCTGAGATCATTTGTTGAGGGCCTCTGGGGTTCCAGTTGTTTCCTCTTGTGACCAAATGTTCTTATTTCAAAGTACAAATTCTAAACAATAAAAGCAACAACAGCGAATCCCATCAGGAAGCATTTGTATCTGCTGTAGCCTCCCATCATTTCAACATCACAACTCTTTAAGTTATACAGCTTGGGCGTATTAATATCCTACTCAAATGTCCTAATTCTGTGTCAGTATCAAACATCAGTGTGCTTTATATCTGCACAGTCTACATCGTGCTGTAAAGGTAGCCCTGTTCTAGCCTCCAGTGTCTTAGCCAATAGAGACCCCTTACTAAACTATGTAACATTTTATAATCTCTAAAATGCCATGACCTTGTGTATGACGTAGTGCATACTTTAGAGATGTATTTGTAACTTTGTTTTAGCTATACTTCGTAATGAATCTCTTCTCTGTGAATACATTGTACTATTGTAGCCTATGTATAAAGAAAACACTCTTTTTTTTGCTGCTACACCATTTGTGCCCTATTATGATGTCTTTGTAGAAAGCAATGCAGTTTTATGTTGTATTAGTATATAAATGCCAATTAATCGATTCAATGTCCACATAATGTGTATACTGCATCGTCAAATATATTGAAAATGATACCAGGATACAACCATGATGTTACAGATGTTATTAAAGGAAATGTCTTATTTTTCATATAAA

Function

GO:

id name namespace
GO:0051781 positive regulation of cell division biological_process
GO:0016020 membrane cellular_component
GO:0008201 heparin binding molecular_function
GO:0008083 growth factor activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU144202 lncRNA downstream 64351 23242037 ~ 23263899 (-) False G107324
TU144201 lncRNA downstream 84310 23242037 ~ 23243940 (-) True G107324
TU144152 lncRNA downstream 103794 23170148 ~ 23224456 (-) True G107282
TU144160 lncRNA downstream 146533 23179692 ~ 23181717 (-) True G107290
TU144149 lncRNA downstream 154832 23092565 ~ 23173418 (-) False trpt1
TU144586 lncRNA upstream 449611 23792054 ~ 23792502 (-) True G107610
TU144596 lncRNA upstream 542154 23884597 ~ 23988901 (-) False rab41
TU144597 lncRNA upstream 542154 23884597 ~ 23971180 (-) False rab41
TU144595 lncRNA upstream 547462 23889905 ~ 23892263 (-) False rab41
TU144657 lncRNA upstream 857056 24199499 ~ 24259346 (-) True G107667
XM_039813670.1 mRNA downstream 5293 23315838 ~ 23322957 (-) False stx5a
XM_039813669.1 mRNA downstream 5293 23315838 ~ 23322957 (-) True stx5a
XM_039813397.1 mRNA downstream 20192 23285319 ~ 23308058 (-) False si:dkeyp-115e12.6
XM_039813522.1 mRNA upstream 3744 23346187 ~ 23351569 (-) True dnajc4
XM_039814257.1 mRNA upstream 14974 23357417 ~ 23363363 (-) False si:ch211-107m4.1
XM_039814256.1 mRNA upstream 14974 23357417 ~ 23363363 (-) True si:ch211-107m4.1
XM_039814301.1 mRNA upstream 21639 23364082 ~ 23368791 (-) True zgc:153018
XM_039812629.1 mRNA upstream 101109 23443552 ~ 23453056 (-) True foxo4
TU144162 other downstream 141239 23184272 ~ 23187011 (-) False rnaseh2c
TU144153 other downstream 151250 23175691 ~ 23177000 (-) False trpt1
unassigned_transcript_473 other downstream 162822 23165357 ~ 23165428 (-) True trnaw-cca_12
unassigned_transcript_472 other downstream 166791 23161388 ~ 23161459 (-) True trnaw-cca_11
unassigned_transcript_471 other downstream 167320 23160859 ~ 23160930 (-) True trnaw-cca_10
unassigned_transcript_474 other upstream 31493 23373936 ~ 23374008 (-) True trnaf-gaa_66
XR_005640439.1 other upstream 544381 23886824 ~ 23892301 (-) False rab41
TU144931 other upstream 1230998 24573441 ~ 24579099 (-) True G107864
unassigned_transcript_475 other upstream 1519669 24862112 ~ 24862184 (-) False trnav-uac_15
TU145115 other upstream 1937160 25279603 ~ 25282199 (-) False G107989

Expression Profile