RNA id: XM_039813586.1


Basic Information

Item Value
RNA id XM_039813586.1
length 3401
RNA type mRNA
GC content 0.43
exon number 2
gene id zbtb33
representative False

Chromosome Information

Item Value
chromosome id NC_053121.1
NCBI id CM020918.1
chromosome length 40300294
location 25252765 ~ 25257632 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TTTCCACAGAAATAACGTCCAGACCCTCTTTCAATGGTGTTTAAATGCTAACATGAAGTCAACCTGTTATTTGTAATATGTCTTGTAATAGTTTTTAGTTTAATTGTGTAGTTGTTAGTCCGACACGACGGCGACTCCTTGTGGCTGTTCAATCAATGAGGCTGCAGTGCAGTTGGCAGGGGAAGCTGTCTGTTGTTAGCCATTGTCTGTAGCCAGCTAAGTAAGTTACTACAGTCGTTGGTAGTGGTACTGCTTAGTCTTGGCAGAAAACATCAAGGTTGCagCCATGCCAAGTCTAAAGCTGATATCTGCAACTGACACACAGTATTCAGCAGCTGTGCTGAAGTCAATGAATGAGCAGCGAAGCCATGGATTATTTTGTGACGTCACCATTATCATACAGGACAAGAAATTCAGAGCTCACAAAACAATCTTGTCTGCCTCAAGTACATATTTCCACCAGCTCTTCAGCGTAGCTGGACAAGTGATCGAGTTAAACTTCATCAGAGCAGAAATCTTTGAGGAGATTCTTAATTACATTTACAGCGCCAAGATTTTCCGTGTCCGCTCTGACATGCTTGAGGAGCTCATCAATGCTGGACAGATACTGGGAGTCAAGTTCATTGCAAACTTGGGGTCACCATTATCACAAGTTAAGGGTCTGCCTGGTTTGTCTAAGGAGACAGGGAGCAAAAGTGACACACCCACAGAGATGATGCCCATCATCGCAGAGTCTTTCTCAATATCCGCAGAGGAATTCAATCAGACAAGCAAGCCTGCAGGTAATGACGAGGACTCGGACAATGATGTTATGTTTGTCTCACGTACAGATGCACAAACcagagcagccaatcagaaagcCAACTCTGGTGAGGTCATTGATGTGGATATAGCTGATTCAAAAAATGCAGCACCAAATCAAAATGAAGAATCAAACCATGCAGTTgcaaaacagaaagagaaagccAGAACCCCGTTGAAAACATATCCTACAAAGCCTCCAGTCATTAGTTGTCCAAACCCCAGTTTCCCCAACAGCAGCCCTCTGCGCAGTCCAGACAGCAGCTCCAATAACTCGTCTTCCCCTGCCAGAGTTTCCTCAGGAAGTGCTCCCACAACGCCAGCCAGGTTAGGCAGTTTCACCCCTGAGCCCTCAAGTGCCTCTCAGACCTCTGAAAACAGTGATATAATGGGAGTCCACAAGAAGCAAGTGTCTGCTTCATCTCAGCAAGGGGATTTCAAAGTAAGGCTCTTAGATGTGTCTGATAGCCAAGCAAATCAAACTAACTTACCCAAATCAGTTATAGCAGCAAAAAAGACAGTGACGCTGAATACAGCAACAGAAATTGATTCAATTTCATCAGGCTGTAAAGTGTATGCCAATATTGGAGAAAACACTTATGACATTGTCCCAGTGAAGGACGATCCAGGCGAAGGGGGCTCTAAAGCCAATAAAGGGAAGAGATCATTAATGGCAACGCCTGTAAAGCCCCTAGATAAAGCACCCACATCCCCGAAGGCCAGCccgaagaagaagaggaccaaaaCAGAGCTTGAGGATCACTACGAGCTGATCATGGATGGGAAGACTTTCTATGTGTGCATCGTCTGCAAGCGCCCGTACGTGTGTCTGACGAGTCTCCGCCGTCACTTCAACACCCACTCATGGGAGAAGAAGTACCCGTGTCGCTACTGTAACAAGGTCTTTGCACTGGCCGAGTACAGAACTAAACATGAAATCCAccacacaggagagaggaggTACCAGTGCTTGGTGTGCAATGAAATGTTCATGAACTACCAGTTACTGTCCACCCACTGCAAGCAAGTCCACAACCAGGATCCCAGcgggaggaaagagaaagatgatgCAGACAACAACTTGTACCGACTCCTGCCGTGTAAGACGGTGCAGATGAAGCCATACTCGTGGAGTACTGACGGGCAGGGGGTCCCGGTCATATCCGAGGATGGCAGCGTGCATCACATAACCAGCGTCGGCGAAGACGTCCACTCCTCCACCCAGACCAGGATGTTGAACTGGGACGACATCTTTATTGAGTCCGATGCTCACATGCCGCCTGATGCTCACAGTCAACCGGAGTCTACCATGAACAGTCCTCCACAAGGAGCCACAGAGTTTGACTTTGTTATACCAGAGACCTACTGAGCAACACACGCGCTGCTCCATTTCCTGTGCCTTTTAGGTGCCCCCGAcccttttttcctctttggTTCCATGTCAACAATATTCTTATGTAATTCTCATAGTGTCCGCTTAAGGTACAGTCACATTAGCCTTTCTGTTTAATGACATTTATGGTGTAATATTTTAATGAATTTCGTGATGATGCAATCTAGAATAATGTCAGAGCAGCAGTTGAAGCCGTCTTCAGTTGAAGTGAAAGTGAGACGGAGTGAATAGTTGCAGGATGGAAGTGTAATGTGACCGTACCTTTACTCACATTACTCTGCTTGTGTAATAGCCTTGATCTTTTGTATCATTGGAATAAATGATCGTCACATTAGCAAAAATACATAGTTCAGTGTATGAGGCAAGTTATAGCTCGATCAGCTAGAAGATGTCTGCTGAAGTATCTGGAGGACAAAGCATTGAAATGAGACATTTCATTTCTCGTTCTATTGTTTCTGCAGGTCATGTTGTTTGAATCAGTTAAAGACATTAAGCATCCCGCTGAGCTCCATTTCATAAAATATGTGAAACCTAAATTGATGATTTTGTCTGTAACCAGGTAACCCTTTTTTCACAGGATATGTAAAATACAGGATGATGCctgtaattaaataaaacatgattgCTTACATTTTAAGTCCATCACCACCAGATGCATCAGTCATGAATCTCAGCCTGTATTTGAAAATCAGATGGATTTTCTGGCCTGATGATTCCTTGTTCCCATTTGAGTGAGAATGTTAATAATGATcggaaaatatattttttcattgtgTGATTGTTGGTGATCCCATGTGGGTATTGTTGCAGGGAAGATATACAATGGTTATTTAATTTTCCAGTGTTTGGAAAAAATAGTAATGGATTTTTTTGTCCATTAAACCccttctgttttattttgatacacctgtacatttttattttctttgctttCCTTGTGCcctaaatgtaattttaatgcAAAATCTGCCAGCTTCATAGTGTAGGCTAGGGAATTTGCATACAAATGTGATGATAGGATTGACATAAATTGAGGACTATGTCAGTCCGTACATATAGCACTTAGTGTTGGATCAGACAGAAGAtttgtttgtaatatttttattacatttttaatcatgTTCTTCCATTGTTTTAAAATTTAGTGATTGGTCAgtatgagtaaaaaaaaaaagtagtgctAACATGGGAGTCTATTCTACTTCAT

Function

GO:

id name namespace
GO:0005634 nucleus cellular_component
GO:0046872 metal ion binding molecular_function
GO:0003676 nucleic acid binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU145020 lncRNA downstream 66287 25180938 ~ 25186478 (-) True G107923
TU145024 lncRNA downstream 66287 25180938 ~ 25186478 (-) False G107923
TU144993 lncRNA downstream 178933 25073181 ~ 25073832 (-) True G107907
TU144988 lncRNA downstream 271968 24977124 ~ 24980797 (-) True G107903
TU144967 lncRNA downstream 362049 24890301 ~ 24890716 (-) True G107890
TU145077 lncRNA upstream 6067 25263179 ~ 25264862 (-) False ndufa1
TU145122 lncRNA upstream 34505 25291617 ~ 25297266 (-) True G107992
TU145172 lncRNA upstream 391422 25648534 ~ 25648780 (-) True G108031
TU145177 lncRNA upstream 422980 25680092 ~ 25680437 (-) True G108036
TU145181 lncRNA upstream 517470 25774582 ~ 25774823 (-) True G108040
XM_039814350.1 mRNA downstream 14151 25233186 ~ 25238614 (-) True atp1b4
XM_039813249.1 mRNA downstream 52250 25198318 ~ 25200515 (-) True mcts1
XM_039814043.1 mRNA downstream 63316 25186589 ~ 25189449 (-) True urp1
XM_039812586.1 mRNA downstream 79925 25167221 ~ 25172840 (-) True si:ch73-335m24.2
XM_039813391.1 mRNA downstream 87680 25147946 ~ 25165085 (-) False ocrl
XM_039813625.1 mRNA upstream 6060 25263172 ~ 25264864 (-) True ndufa1
XM_039813251.1 mRNA upstream 25689 25282801 ~ 25284565 (-) True sowahd
XM_039813252.1 mRNA upstream 27593 25284705 ~ 25290134 (-) True pttg1
XM_039813268.1 mRNA upstream 59186 25316298 ~ 25320522 (-) True ube2a
XM_039813267.1 mRNA upstream 109058 25366170 ~ 25432527 (-) True tnmd
unassigned_transcript_475 other downstream 390581 24862112 ~ 24862184 (-) False trnav-uac_15
TU144931 other downstream 673666 24573441 ~ 24579099 (-) True G107864
XR_005640439.1 other downstream 1360464 23886824 ~ 23892301 (-) False rab41
unassigned_transcript_474 other downstream 1878757 23373936 ~ 23374008 (-) True trnaf-gaa_66
TU144162 other downstream 2065754 23184272 ~ 23187011 (-) False rnaseh2c
TU145115 other upstream 22491 25279603 ~ 25282199 (-) False G107989
TU145117 other upstream 22491 25279603 ~ 25288086 (-) True G107989
TU145230 other upstream 1200883 26457995 ~ 26460707 (-) False rpl36a
TU145357 other upstream 1732152 26989264 ~ 27001011 (-) True G108181
TU145368 other upstream 1808306 27065418 ~ 27065947 (-) True G108191

Expression Profile