RNA id: XM_039813602.1


Basic Information

Item Value
RNA id XM_039813602.1
length 1536
RNA type mRNA
GC content 0.44
exon number 4
gene id cfl1
representative True

Chromosome Information

Item Value
chromosome id NC_053121.1
NCBI id CM020918.1
chromosome length 40300294
location 23493111 ~ 23500048 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TACGCTCCCGCTCGTGCACCTTGCTCGAGTCAGGGGCGCGCTTATGGGCGCGTTCACGTTGTGTATCCAGTGTGTGAGCGAGACCCACAATTCATCATCACAGTCCATTCAATTTGTACTCAGACGCTGACCCATTCAGAGCTTCAGCCATGGCCTCCGGTGTGAAAGTCACAGATGAAGTTATCGCGGTCTTCAACGACATGAAGGTGCGTAAGGCTCAGGCGAACGAGgatgagaagaggaagaggaagaaggccATTCTGTTCTGCATGAGCAAGGACCTCAAGAACATTGTTCTGGATGATGGCAAAGAGATCCTGCTGGGTGACTTGGGAACCACCGTCCAGGACCCATACCAGCACTTTGTGAAGATGCTGCCCCCAGATGACTGCCGCTACGCCCTGTATGACGCCACCTATGAGACCAAAGAAACAAAGAAGGAGGACCTGGTCTTTATCTTCTGGGCTCCAGAAAGTGCCCCCTTAAAGAGCAAGATGATCTATGCCAGCTCAAAAGATGCTATCAAGAGAAAGTTTGAAGgTATTAAGCACGAGTGGCAGGTGAATGGTTTGGAAGACCTCAAAGATCGGCACACCCTGGCAGAAAAACTCGGCGGCTCGTCAGTAGTCAGCCTGGAAGGAGCCCCTATATAAATATTGCCcgcccacccccccccctcctctctggcTTCGATCGAGGCCTTTCAGACACATCTGTTGGGTTTAGTGTTCATTCCAGTGTGGTTTGGAGAAGGGCAAAAGCAGAACCAGCACCATTTGCGGGACTCTCGGGGTGAGATATTGTGGGTGGGTTTGGGGTCAAGTgacagtttaaaaacaaaaagaaattccaCTAATGCAGACTGTCATTCCAGTTCACGCAACATAAAGAATatgaacaaaacacacaaaggaaAAACATTAAGATACAACGAggaaggatgatgatgatgatgttaaaACTAAAATACACATATTGTTCATGTTTAATACAGGGTTCTGTTCTTCTTTCGGGTTCCATTGGTATGAGTGCAGAGAAGGGACAGGAAATAGCCTTAGTTTTCCAACCATTGAATCCTGACAAATAATCGTTCCaactacttcttttttttttttttttgccaaacttCTAGTTAagttttgtaaatgtgtgtagTTGAGACTAGTTGTAGTATGAACTAATTCACAAGGTGTATCAAAACCTTCTCTGGGGGGGAAACACGgttaaatatatattgtttttgtttggttatccatttgttttctttttgaacATGCAAATTACAAAATTTGAGTGATTCCTTTTTATTTCCAGTTCTGGGTCTGAAAACCATGGCATTTTATGTAGTTAACAGACAACATTCCTTGTACTTGTTAAAACCAGGATCTCCTTGAATTAAAATCTCTGGTGTTATGAAGGTCTGATGGGGAGCGATGTGTATATGAAAGACCAGCGGTCAAGAGTTTAGACTGAATATTGAATGGTGGATGTTTTGTATCGTCTCCTTATCTCTAATAAAAAGCACTAAACTACTGa

Function

GO:

id name namespace
GO:0030042 actin filament depolymerization biological_process
GO:0015629 actin cytoskeleton cellular_component
GO:0003779 actin binding molecular_function

KEGG:

id description
K05765 CFL; cofilin

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU144202 lncRNA downstream 229212 23242037 ~ 23263899 (-) False G107324
TU144201 lncRNA downstream 249171 23242037 ~ 23243940 (-) True G107324
TU144152 lncRNA downstream 268655 23170148 ~ 23224456 (-) True G107282
TU144160 lncRNA downstream 311394 23179692 ~ 23181717 (-) True G107290
TU144149 lncRNA downstream 319693 23092565 ~ 23173418 (-) False trpt1
TU144586 lncRNA upstream 292834 23792054 ~ 23792502 (-) True G107610
TU144596 lncRNA upstream 385377 23884597 ~ 23988901 (-) False rab41
TU144597 lncRNA upstream 385377 23884597 ~ 23971180 (-) False rab41
TU144595 lncRNA upstream 390685 23889905 ~ 23892263 (-) False rab41
TU144657 lncRNA upstream 700279 24199499 ~ 24259346 (-) True G107667
XM_039812629.1 mRNA downstream 40055 23443552 ~ 23453056 (-) True foxo4
XM_039814301.1 mRNA downstream 124320 23364082 ~ 23368791 (-) True zgc:153018
XM_039814257.1 mRNA downstream 129748 23357417 ~ 23363363 (-) False si:ch211-107m4.1
XM_039814256.1 mRNA downstream 129748 23357417 ~ 23363363 (-) True si:ch211-107m4.1
XM_039813522.1 mRNA downstream 141542 23346187 ~ 23351569 (-) True dnajc4
XM_039813739.1 mRNA upstream 2121 23501341 ~ 23514176 (-) True atl3
XM_039814156.1 mRNA upstream 15395 23514615 ~ 23520010 (-) True si:ch211-145o7.3
XM_039814157.1 mRNA upstream 20906 23520126 ~ 23526960 (-) True yif1a
XM_039814041.1 mRNA upstream 37479 23536699 ~ 23539386 (-) True ccdc85b
XM_039813911.1 mRNA upstream 88910 23588130 ~ 23626365 (-) True mrpl11
unassigned_transcript_474 other downstream 119103 23373936 ~ 23374008 (-) True trnaf-gaa_66
TU144162 other downstream 306100 23184272 ~ 23187011 (-) False rnaseh2c
TU144153 other downstream 316111 23175691 ~ 23177000 (-) False trpt1
unassigned_transcript_473 other downstream 327683 23165357 ~ 23165428 (-) True trnaw-cca_12
unassigned_transcript_472 other downstream 331652 23161388 ~ 23161459 (-) True trnaw-cca_11
XR_005640439.1 other upstream 387604 23886824 ~ 23892301 (-) False rab41
TU144931 other upstream 1074221 24573441 ~ 24579099 (-) True G107864
unassigned_transcript_475 other upstream 1362892 24862112 ~ 24862184 (-) False trnav-uac_15
TU145115 other upstream 1780383 25279603 ~ 25282199 (-) False G107989
TU145117 other upstream 1780383 25279603 ~ 25288086 (-) True G107989

Expression Profile