RNA id: XM_039813612.1


Basic Information

Item Value
RNA id XM_039813612.1
length 1377
RNA type mRNA
GC content 0.43
exon number 5
gene id LOC120566913
representative True

Chromosome Information

Item Value
chromosome id NC_053121.1
NCBI id CM020918.1
chromosome length 40300294
location 22942462 ~ 22949531 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

AGATAGTCTCAGTTTCGTTATTACAGCCTAAGGTCACGTGCTCCGGCTAAACAGAGCAACAATCAGCTGGTCGCTCACAGCTGAGTtttggtgtgtgtctctttggtGACGTCTCTGGTATGAAAGAGAGCTGTCGACATTATCTTTTGAAGGTGCTGAAAGTTACCTGGAAAGTCAAACCATACGAAACCAGACAAAAGAAACCCTGACATGGCCCCAACACTGTACGATGAGAAACCAGAGCTCGGGGACTTGATTGAGATCTTCCGGGGCTCCTATCAGCACTGGGCTGTGTATGTTGGCGATGGCTTCCTTGTTCACTTGGCACCACCCTCGGATGTCCCAGGTGCAGGCGCCAGCAGTATAATGTCTGTCATAACTGAGAAGGCCATTGTGAAGAAAGAGGAGCTGTGGGACGTGGTGGGAACCGACCAGTGGAAAATCAACAACAGCCTGGACAACGAGTACAAGCCACGCCCAGTTCACGTCATTGCGAGGGAGGCCTGTGCGAAGGTGGGCGATGAACTGCCGTACTGCGTCTTCAGGGGGAACTGTGAGCACTTTGCAAACGAGCTGCGCTATGGAAAAGCTGAGTCCCGGCAGGTGCGTAAGGCAGGAGAAACAGTCATGGTCGCAGGTGTGGCTACAGTGGTGGGTCTGGGGATCGTGGCTCTAGCAGGAGCTCTGTTTGGAGgtgggaaaaaagaaaacaagaacacacagtGAAGTACCAGGTCGCCTGTTCAGGGACTTGATGAACAGATCACGAACGTTTTCTGTGTGATATTAGTGTATAAGCTAGGCTTTAGCTCACAGAAAACGTTAATTTACATTTGTGATTTAGTCAGAAATTAGATTTCTACTCAACTTTACCATATGTCCCGCATGCCTTTGTGGGTTTGAATAACAATGCAAAGCTTTTAGGTTAGGGATCAAGATTctatttttctgactttttcaaATTTCTACAGACAGCACATACAAGCACAAGAAGCACTATTTCCACTAATGAAGCTGCCAAGATAaaatgtttcaatgttttaataTGAACTGAAGATTAAGCAgatatgttttgtattgtgaAGGATGATAAAAACAAAGCTGTGGTGGTAGTTGCTTATGAAGAAATATTAGCTACCAAAGTCGAGCCTTTAGACAAGAATATTTTACATAATCAAAATTAAGCTAATATAATGATATTGTGGTTACATCTCACAGAAAATGCCATGTAATGTCTGAAAGGAGTAAGGATGTGGACGGATCTAATTCAGCAGTTTTCTTATGACATGCTATCTCCTAATGAGTTCACAAGTTAACTAGAATTCATAATACAGTGTCTTCTCTTACATTTGTTTTGAATAAATAATTTATGTGATA

Function

GO: NA

KEGG:

id description
K23266 RARRES3; retinoic acid receptor responder protein 3

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU144024 lncRNA upstream 10300 22929269 ~ 22932162 (+) True G107191
TU144020 lncRNA upstream 15726 22925809 ~ 22926736 (+) True G107187
TU144016 lncRNA upstream 18472 22919853 ~ 22923990 (+) True G107185
TU144013 lncRNA upstream 26385 22915294 ~ 22916077 (+) True G107182
TU144007 lncRNA upstream 32947 22909076 ~ 22909515 (+) False ubxn1
TU144034 lncRNA downstream 1064 22950595 ~ 22997038 (+) False rom1b
TU144039 lncRNA downstream 8627 22958158 ~ 22958580 (+) True G107203
TU144112 lncRNA downstream 150510 23100041 ~ 23127134 (+) False flrt1b
TU144140 lncRNA downstream 287720 23237251 ~ 23237450 (+) True G107276
TU144215 lncRNA downstream 321268 23270799 ~ 23271221 (+) True G107334
XM_039813606.1 mRNA upstream 32900 22903755 ~ 22909562 (+) True ubxn1
XM_039813836.1 mRNA upstream 62991 22877797 ~ 22879471 (+) True map1lc3cl
XM_039813683.1 mRNA upstream 80383 22858625 ~ 22862079 (+) True ttc9c
XM_039813685.1 mRNA upstream 80383 22858828 ~ 22862079 (+) False ttc9c
XM_039813680.1 mRNA upstream 86761 22847118 ~ 22855701 (+) False LOC120566951
XM_039813065.1 mRNA downstream 29788 22979319 ~ 22987555 (+) True LOC120566541
XM_039814411.1 mRNA downstream 41433 22990964 ~ 22996988 (+) True rom1b
XM_039813822.1 mRNA downstream 48995 22998526 ~ 23039438 (+) False ccdc88b
XM_039813823.1 mRNA downstream 48998 22998529 ~ 23039438 (+) True ccdc88b
XM_039813821.1 mRNA downstream 48998 22998529 ~ 23039438 (+) False ccdc88b
TU143990 other upstream 76786 22862190 ~ 22865676 (+) True G107163
XR_005640584.1 other upstream 1481012 21448804 ~ 21461450 (+) False stx3a
TU143018 other upstream 2590295 20351721 ~ 20352167 (+) True G106465
XR_005640374.1 other upstream 2881124 20043031 ~ 20061338 (+) False LOC120566323
TU142686 other upstream 3336689 19604840 ~ 19605773 (+) False G106237
TU143997 other downstream 5441 22954972 ~ 22973761 (+) True G107168
TU144145 other downstream 308740 23258271 ~ 23262229 (+) False tgfb5
TU144214 other downstream 319260 23268791 ~ 23270216 (+) True G107333
TU144280 other downstream 505036 23454567 ~ 23466184 (+) False ubl3b
TU144289 other downstream 538770 23488301 ~ 23491358 (+) False LOC120566905

Expression Profile