RNA id: XM_039813669.1


Basic Information

Item Value
RNA id XM_039813669.1
length 1667
RNA type mRNA
GC content 0.46
exon number 12
gene id stx5a
representative True

Chromosome Information

Item Value
chromosome id NC_053121.1
NCBI id CM020918.1
chromosome length 40300294
location 23315838 ~ 23322957 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GATTTTCCGTCCCTGTAAAGTAGACGTGGCAGTGACGTCAATGCCGGAAACGACCGGAACTTTAACTCCTGGGTTGATTAGTTTTTACCAGCAACATCGAGGGCTCTCGGAATATGTTGTAATATCGATTGAAACGTGTGTACATATGTCCATGAAGGATACCCAACCTTGTGTTTGAGTTTCCGCACACCGGGAGATCTTCCTATTAATCCATAACACAGAGCAAAGGTAAAGACACGGCAGTTCCAGGTGGTTTCTGGTCTACAGCGGGCTGGTGACCCTTTACCGGCGGCAAGATGACGTGCCGTGACCGGACCGTCGAGTTCCAGTCAGCCTGTAAATCTCTCCAGGGCAGGCCGAATGGAGTCCAGCCCAGTAAACCAATTATTAGCGCTCTCAGGCAGCGCAGTGACTTCACAGTTATGGCCAAGAGAATTGGAAAAGACTTGAGCAATACATTTGCCAAACTGGAAAAGCTCACCATTTtggcaaaaagaaaatctctATTTGACGACAAGGCAGTGGAGATCGAGGAGCTAACGTACATCATTAAACAAGACATCAACAGTCTAAACAAACAGATAGCACAGCTACAGGACTTGGTGAGGTCCCGCGGAGCTCCAGGTGGCCGACACATCCAAACCCACTCTAACACTATAGTGGTGTCTTTACAGTCCAAACTGGCTTCAATGTCCAATGACTTCAAATCAGTCCTAGAAGTCAGAACAGAGAACCTGAAGCAGCAGCGCAGCAGGAGAGAGCAGTTCTCCCAGCCCCCTGTCTCGTCTTCTCCTCTGATGGCCAACAACTTCAggAGCCGAAAAAAAGGGGCCCAGGAGCCGCATGCAGCTCGCGAGCCGCGCAATGGTTACCAGGGCAATACAACCTCAAATTTAAAAGAGAGCTCGGTCCTGATGCAGGATGAGTCCAGGAGTATGGGGGATGTAGCCATCGATATGGACTCTCAGACCAATCCTTTGCAACTCCAGCTTATTGATGAGCAgGACTCATACATCCAAAGCCGTGCGGACACCATGCAGAACATTGAAAGCACCATCGTGGAACTGGGCTCTATATTCCAGCAGCTGGCGCACATGGTAAAGGAGCAAGAGGAGACCATCCAGAGGATCGACGCTAATGTGGAGGACACCCAGCTGAATGTGGAGGGCGCCCATACTGAGATCCTCAAATACTTCCAGTCCGTCTCCTCCAACCGCTGGCTGATGATCAAGATCTTTCTCGTCCTCGTTGTCTTCTTTATCATCTTTGTTGTCTTCTTTGCTTAAAGAAaagaggagcagctgagagaagaggaagagcacATTGAATGAGGGGAAGTGAAACTAAAACTGGACTGAGAAGACATGTCCAGACGACATATTTGAAGGGCAGACTTATCTATCAAAGTGATGGTTTGATAAAGGCTTGGGAGACGCTCGGACTAATAAAGACTTTTCCATTAATACAGACTTTCCGGTTAGTCCCAAGCTACAGACTCTTGATCTTTATTAGACAATTCAGTGAAGAATGAAGATGTCGAACTTTGTCCAAATGAAAGAATAAATTATCTTAAATCCCCACTTTGTATAGAAATGGAGCAAAAACTGCTCAGTATTGTACTTTGACCAATTATTCATAAACATTTAATCAAAATGGCTATAATTTAA

Function

GO:

id name namespace
GO:0006886 intracellular protein transport biological_process
GO:0016192 vesicle-mediated transport biological_process
GO:0016020 membrane cellular_component
GO:0005484 SNAP receptor activity molecular_function

KEGG:

id description
K08490 STX5; syntaxin 5

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU144202 lncRNA downstream 51939 23242037 ~ 23263899 (-) False G107324
TU144201 lncRNA downstream 71898 23242037 ~ 23243940 (-) True G107324
TU144152 lncRNA downstream 91382 23170148 ~ 23224456 (-) True G107282
TU144160 lncRNA downstream 134121 23179692 ~ 23181717 (-) True G107290
TU144149 lncRNA downstream 142420 23092565 ~ 23173418 (-) False trpt1
TU144586 lncRNA upstream 469097 23792054 ~ 23792502 (-) True G107610
TU144596 lncRNA upstream 561640 23884597 ~ 23988901 (-) False rab41
TU144597 lncRNA upstream 561640 23884597 ~ 23971180 (-) False rab41
TU144595 lncRNA upstream 566948 23889905 ~ 23892263 (-) False rab41
TU144657 lncRNA upstream 876542 24199499 ~ 24259346 (-) True G107667
XM_039813394.1 mRNA downstream 7775 23285319 ~ 23308063 (-) False si:dkeyp-115e12.6
XM_039813395.1 mRNA downstream 7780 23285319 ~ 23308058 (-) False si:dkeyp-115e12.6
XM_039813397.1 mRNA downstream 7780 23285319 ~ 23308058 (-) False si:dkeyp-115e12.6
XM_039813393.1 mRNA downstream 7780 23285319 ~ 23308058 (-) True si:dkeyp-115e12.6
XM_039813396.1 mRNA downstream 7787 23285319 ~ 23308051 (-) False si:dkeyp-115e12.6
XM_039813519.1 mRNA upstream 5293 23328250 ~ 23344198 (-) True vegfba
XM_039813520.1 mRNA upstream 5293 23328250 ~ 23342443 (-) False vegfba
XM_039813521.1 mRNA upstream 5293 23328250 ~ 23341381 (-) False vegfba
XM_039813522.1 mRNA upstream 23230 23346187 ~ 23351569 (-) True dnajc4
XM_039814257.1 mRNA upstream 34460 23357417 ~ 23363363 (-) False si:ch211-107m4.1
TU144162 other downstream 128827 23184272 ~ 23187011 (-) False rnaseh2c
TU144153 other downstream 138838 23175691 ~ 23177000 (-) False trpt1
unassigned_transcript_473 other downstream 150410 23165357 ~ 23165428 (-) True trnaw-cca_12
unassigned_transcript_472 other downstream 154379 23161388 ~ 23161459 (-) True trnaw-cca_11
unassigned_transcript_471 other downstream 154908 23160859 ~ 23160930 (-) True trnaw-cca_10
unassigned_transcript_474 other upstream 50979 23373936 ~ 23374008 (-) True trnaf-gaa_66
XR_005640439.1 other upstream 563867 23886824 ~ 23892301 (-) False rab41
TU144931 other upstream 1250484 24573441 ~ 24579099 (-) True G107864
unassigned_transcript_475 other upstream 1539155 24862112 ~ 24862184 (-) False trnav-uac_15
TU145115 other upstream 1956646 25279603 ~ 25282199 (-) False G107989

Expression Profile