RNA id: XM_039813680.1


Basic Information

Item Value
RNA id XM_039813680.1
length 1978
RNA type mRNA
GC content 0.47
exon number 9
gene id LOC120566951
representative False

Chromosome Information

Item Value
chromosome id NC_053121.1
NCBI id CM020918.1
chromosome length 40300294
location 22847118 ~ 22855701 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CAGTTGgagtctgtcagtcagtcattgcACGATGAGCTTGAATGTCCCAGGATTAATAGTGATGGTGCTCTTCTACCTGCTGGTGCTGGGCACCGGCATCTGGGCCTCCATGAAGTCCAGGCGGCTGCAGAAGAGCATGCAGGCGGACCGGACAGAGATCACCCTGCTGGGCAACAGAGGGATTAGCATGGTGGTGGGAGTCTTCACCATGACAGCTACATTTGTTGGAGGGGGCTTCATCGTTGGTATGACAGAGGCAGTGTACACTCCAACCAtgggtctgacctgggctgTCATACCGGTAACAGCAGCCCTGTCTTTCATTGTTGGTGGACTTTTCTTCGCCAAGACGATGAGAGACAAAAAATATGTGACAATGATGGACCCGTTCAAGATCAAGTATGGAAATGCAATAAGTGGAGTTCTGTCTGTGGCACTACTGATATCTGATATAATCTGGGTTACAGGAACTCTAATTGGTTTAGGTGCAACAATGAGTGTGATCCTGGATTTGCCCTATACTGTTTGCATTTGGCTCTCTGCCGCAGTAGCCATCATCTACACACTTCTGGGAGGCCTCTACTCTGTAGCCTACACCGACATCATACAGCTAACCCTCATATTCTTCAGTTTGTGGTTATGTGTCCCCTTCATCCTTATGAATGCCCATTCAACTGACATCACCAAGACTGCTTTCAACTTCACCTACCAGGCCCCCTGGATTGGTTCAGTGGATAAAGAAAGAGCGTGGAGAACACAGCCATTGgCTTTTGGTAACCTTGGATATCAGGACTTCCACCAGAGGACCCTGTCAGCTGCCTCGTCAGCCACAGCCAGGATCACCTGCTTTATTGCAGCTCCCCTCATCCTCATACTCGGAATCCCATCCATGCTGATTGGAGCAGTCGCAGCATCAACAGACTGGAACACGACTGTGTATGGCTCCCCGTCCCCATACGAGCGTGGAGAGGCCGGTCTGGTTCTGCCCATTGCTCTGCAGCACCTCACACCACACTACATCTCCATCATCGGTATTGGAGCTATAGCTGCTGCCGTGATGTCATCAACGGACTCTGCTTTATTGTCAGCCGCCTCCATCTTCACATCCAACATCTATAAGAACATCCTCAGGACCGAGGCATCAGAGGGGGAGCTCCAGTGGGTAATCCGTGCCACTGTGGTGTTGGTGGGCTTGGCTGGTACAGTGCTCACCTTCCTACACAACAGCATTATGGTTTTCTGGATCCTGGGCTCAGGCATAACCTACACCATCATGTTCCCTCAACTCGTCTGCGTCCTCTTCTTTAACATCTCCAATGGCTACGGCTCCGTCATGGGCTTGCTAGTAGGAGTATTATTGAGACTGCTGAGCGGCGAGCCATCTATAGGGTTGCCTGTTGTTCTCCACTTTCCAGATTGCACTCTTGAGGATGGCATATATGTCCAGCACTCTCCTGTTCAGACGATCTGCATGTTGTCCAACATGTTTGCCACTTTGTTGTTCTCCTCCCTGGCGTCACTGCTCTTCAATAAAGGACTGATTCCTGAGAGGTGGGACGTATTTAAAGTGAAAACTCACAAACCAACCCAGAACCTAATGCTAATGAGCAATGGTACCACAAAAACAGACGAGGAGGAGAAAACTGAAGATCAGAATGAGACTGAATTAATGTTTACTACAAATCAGTAGGATTGAAAGAAAAACGGTTTAATGGGATGCTTACATGTTTTGTATGGTGATATTTTATCACGTCTCTATTTTTATACCAAATACTTTTCTCTTTGTAAAATTATATAGGATGGTGTAAGAATTCATCTCTTGCAACAAGTGCATGTGTTGTGAATGTATAATACTTGCTTTGGCAATGGTAGTCCTGTACTTAGGTACAATTTTGAAGTACTTgttctttacttgagtatttctattttctgttACTTCTACTCCTCTATACTTCAGAGGGcgatattgtacttttta

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU143967 lncRNA upstream 23256 22823601 ~ 22823862 (+) True G107149
XR_005640528.1 lncRNA upstream 121465 22723025 ~ 22725653 (+) True LOC120567160
TU143870 lncRNA upstream 215748 22631079 ~ 22631370 (+) True G107073
TU143843 lncRNA upstream 431783 22415002 ~ 22415335 (+) True G107050
XR_005640407.1 lncRNA upstream 450067 22390353 ~ 22397051 (+) True LOC120566464
TU143988 lncRNA downstream 954 22856655 ~ 22856868 (+) True G107161
TU143991 lncRNA downstream 10267 22865968 ~ 22866201 (+) True G107164
TU143993 lncRNA downstream 11378 22867079 ~ 22874836 (+) False LOC120566955
XR_005640493.1 lncRNA downstream 11771 22867472 ~ 22875098 (+) True LOC120566955
TU143992 lncRNA downstream 18626 22874327 ~ 22874836 (+) False LOC120566955
XM_039814407.1 mRNA upstream 24088 22815142 ~ 22823030 (+) True LOC120567435
XM_039814025.1 mRNA upstream 41295 22794685 ~ 22805823 (+) True LOC120567165
XM_039814027.1 mRNA upstream 41295 22794685 ~ 22805823 (+) False LOC120567165
XM_039814029.1 mRNA upstream 52910 22789614 ~ 22794208 (+) False LOC120567166
XM_039813683.1 mRNA downstream 2924 22858625 ~ 22862079 (+) True ttc9c
XM_039813685.1 mRNA downstream 3127 22858828 ~ 22862079 (+) False ttc9c
XM_039813836.1 mRNA downstream 22096 22877797 ~ 22879471 (+) True map1lc3cl
XM_039813606.1 mRNA downstream 48054 22903755 ~ 22909562 (+) True ubxn1
XM_039813612.1 mRNA downstream 86761 22942462 ~ 22949531 (+) True LOC120566913
XR_005640584.1 other upstream 1385668 21448804 ~ 21461450 (+) False stx3a
TU143018 other upstream 2494951 20351721 ~ 20352167 (+) True G106465
XR_005640374.1 other upstream 2785780 20043031 ~ 20061338 (+) False LOC120566323
TU142686 other upstream 3241345 19604840 ~ 19605773 (+) False G106237
TU142049 other upstream 4953588 17890967 ~ 17893530 (+) False gabra6a
TU143990 other downstream 6489 22862190 ~ 22865676 (+) True G107163
TU143997 other downstream 99271 22954972 ~ 22973761 (+) True G107168
TU144145 other downstream 402570 23258271 ~ 23262229 (+) False tgfb5
TU144214 other downstream 413090 23268791 ~ 23270216 (+) True G107333
TU144280 other downstream 598866 23454567 ~ 23466184 (+) False ubl3b

Expression Profile