RNA id: XM_039813685.1


Basic Information

Item Value
RNA id XM_039813685.1
length 1142
RNA type mRNA
GC content 0.47
exon number 4
gene id ttc9c
representative False

Chromosome Information

Item Value
chromosome id NC_053121.1
NCBI id CM020918.1
chromosome length 40300294
location 22858625 ~ 22862079 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

AGAATGAGCGTTAGCTAGTGTCTAACTAGCTCTCCTGCAGAAATGGAGGCTGGGAGAAGAGATGAGAGTCTGGATGTGaggggagcagcagcagcagcagcagaaccaAGCTTTTCTGGACACCAACAGACCTCTGCAAAGCCGGTTTGGACTTTACTAGAGGAAGCAGCCCAAATGAAAACGGAAGGGAATGCTCTCTACAGGGAGAAAAACATTCGCCCAGCCATCGGGCGTTATCACCGAGCTCTGCTGGTTCTCAGAGGCCTCGACTCTGATGTGATGGCGTCAGTGAAAGGGTTTGGACCTGAGATACCTGCTCTCGCACCTGAACAGGAGGCTTTTCTGAGAAACACACAAGTGGACTGCTACAACAACTTAGCTGCCTGTTTGCTGCAGAGACAGAGGGTTGACTATTCTCGTGTGCTGGACTACAGCCTGCGGGTGCTGAAGTGGCGACCAGGTGATGTCAAAGCAATGTACAGGGCAGGAGTAGCCACTCTGGAGATGGGAGATGCACAGACTGCCAAACAATACCTCACCCAGGCCTGCAGAGAGCAGCCTAATGATGCCAATGTTAGGAAACATCTGCAGAGGGCTGAGGAAAAACTGAATCAAGAGTTGCAAAAAGAGAGGGCCATGTACCGAGGCATGTTTTCCACCAGCCTGAAGAGCAGCTCCGGAGAAGGGATTAACCAAACCAACAGAGCTGGTGAAGGAGTTTGAGCCTGCCAGCTCAACCCACCAAATGAAGCCtcaaactgagagagcgtgttGATCCTCAACTGATCACCAACTGAAGAATGTTGACACATCTTGAATAATGTTGCTTTGTCTCCTTTAGGTGAGAATAGGAAAGTAAGAACTGTAATTATACAGACTACTGGGAAGCAGTCAATAGGAAACTAAAGATGTCACTGCTGAAAATAGAAAGAAGAGGATGGGAAAGTTAGTTTCCTAGCAACACAGAAGCAGAGCTGTATTTCAGTTTGGATATTTCAGAAAAATGCCACTGAAAGCTAAAATGAGACTCGTCATGCACTACTGATTATGCCTTCATGATTACAGGTGTCTGGTCAGTGCTGTGAATGTTGATTATGTGAGTTTtcaagtaaaatatttttttataaataacatCCAAGCTC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU143988 lncRNA upstream 1960 22856655 ~ 22856868 (+) True G107161
TU143967 lncRNA upstream 34966 22823601 ~ 22823862 (+) True G107149
XR_005640528.1 lncRNA upstream 133175 22723025 ~ 22725653 (+) True LOC120567160
TU143870 lncRNA upstream 227458 22631079 ~ 22631370 (+) True G107073
TU143843 lncRNA upstream 443493 22415002 ~ 22415335 (+) True G107050
TU143991 lncRNA downstream 3889 22865968 ~ 22866201 (+) True G107164
TU143993 lncRNA downstream 5000 22867079 ~ 22874836 (+) False LOC120566955
XR_005640493.1 lncRNA downstream 5393 22867472 ~ 22875098 (+) True LOC120566955
TU143992 lncRNA downstream 12248 22874327 ~ 22874836 (+) False LOC120566955
TU143999 lncRNA downstream 21998 22884077 ~ 22887891 (+) True G107170
XM_039813679.1 mRNA upstream 3127 22847118 ~ 22855701 (+) False LOC120566951
XM_039813678.1 mRNA upstream 3127 22847118 ~ 22855701 (+) True LOC120566951
XM_039813680.1 mRNA upstream 3127 22847118 ~ 22855701 (+) False LOC120566951
XM_039813681.1 mRNA upstream 3127 22847118 ~ 22855701 (+) False LOC120566951
XM_039814407.1 mRNA upstream 35798 22815142 ~ 22823030 (+) True LOC120567435
XM_039813836.1 mRNA downstream 15718 22877797 ~ 22879471 (+) True map1lc3cl
XM_039813606.1 mRNA downstream 41676 22903755 ~ 22909562 (+) True ubxn1
XM_039813612.1 mRNA downstream 80383 22942462 ~ 22949531 (+) True LOC120566913
XM_039813065.1 mRNA downstream 117240 22979319 ~ 22987555 (+) True LOC120566541
XM_039814411.1 mRNA downstream 128885 22990964 ~ 22996988 (+) True rom1b
XR_005640584.1 other upstream 1397378 21448804 ~ 21461450 (+) False stx3a
TU143018 other upstream 2506661 20351721 ~ 20352167 (+) True G106465
XR_005640374.1 other upstream 2797490 20043031 ~ 20061338 (+) False LOC120566323
TU142686 other upstream 3253055 19604840 ~ 19605773 (+) False G106237
TU142049 other upstream 4965298 17890967 ~ 17893530 (+) False gabra6a
TU143990 other downstream 111 22862190 ~ 22865676 (+) True G107163
TU143997 other downstream 92893 22954972 ~ 22973761 (+) True G107168
TU144145 other downstream 396192 23258271 ~ 23262229 (+) False tgfb5
TU144214 other downstream 406712 23268791 ~ 23270216 (+) True G107333
TU144280 other downstream 592488 23454567 ~ 23466184 (+) False ubl3b

Expression Profile