RNA id: XM_039813745.1


Basic Information

Item Value
RNA id XM_039813745.1
length 6546
RNA type mRNA
GC content 0.49
exon number 12
gene id bcorl1
representative False

Chromosome Information

Item Value
chromosome id NC_053121.1
NCBI id CM020918.1
chromosome length 40300294
location 24867369 ~ 24893243 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GGATAGCCGAGCACTACATCTCCCATGCTATCACCGAGCACCCttctgcccctctctctctctcccaccagAGTCAGACTGGAGATACTGAACGGACTGTCTTGACGACCCCCCtaccctcccctcctcctctctccctcccgcCCCCCCCGGACTTTTAGAACCGAAAACCGTCGAGATTAGTAAGCAGCCACGGACGGCAGAGGCGAAAGGCTGGACATGGCCGTATCCGAGTCGTTCCTGTAGGCTACGTCGTTCACATGCCATCTGGACGAGCGGCATATCACTGTATTTCAAGGAGAACTCTCACCTGACTGACTCAGCTACCCCCGAGGTATGTTGTGTTAAAGAAACACCTATGCAGGTGGATCCTACACTAATGAATGTAGGGGATGGAGGCACGGTGAGCAGAGAGATCAGTGCTCCAAATAAAGTGTCTGCTAGTATGGTGGGAAATCCCCCCCAGACGCTACCCCCTGAGTTTAGAGGAGATGTTACCCTCAGTCAGCAAAACAAGACCACTCCAACAACAGACTGTAAGACAGCAAAAGCCTGCCTGGACAATAGCAATTATAACCACAGCCCTGAGCCTTCTCCACCTCAACAGCCCAACAATGCACCAACGTCCAGCTCAGCCCTCACTGGCTCAGAAAAGAGAGCAGACAAAAGGGCAGAGGCCCCTAAACTCAAGGCTGATGGTGTTGTGGCCTTCCCCACTCCTCAGTGGTCAAGTGGTGTAAAAGTCAGCCGGGAGGACTCTCTCAACTCCTGTCACAGCAATGTGACATCCAGCAAGAAATCACACCCGCAAACACAATCTGTGCAAAGTGTTTCACCTGGGTTTCAGTGCTCCACCATGTTTAAACCAGTCCAGCctgttgccttccttccttccactaATTTTCCCTCTCCACTTTGTAAAATCACTCTTCCACCAGCATTGGGTCAGATTGCAGCATTGAGAGAAGCCACAGCCAGTCAGTTTCACAAAGAAATTCAGCCTCAAAGCTCAGGTGTTGGAGGGACACCTCTCATGCGGACCTATCCCTATCCGTTCTCGGTAGGCCGAACTCCAGCGGCAGAGAAAAAAGCCAGCGCATCATCATCAAAACTTAAATCTAACCATTCATCTAATAAGAACTCCAAATCTGTGGGAGAGCATACATCTTTAGCCTCAGTGGTAGCCTCACCAGCTATTGCCCTACCATTGCAGCACCCGTCATTAACTCCTGCAGCACCCACCCGCTACACGCTGTCTCCCACTGCTGCCATTTGCTGTGGCTCTGCATTGGCCAGCATCACCTCTCAGAGCAGACTGCTGAACCATGTGGAGAAAGGCAACAGCATAGACAAAACAACCATGGGATCTCTTAAAATGACACCTCCCTCTGCTTCAGAGGACTATACAGCTTGCTCAGTTGAACCAAGAGATGTACCTCTTGATTTATCTGCTAAATCAAAACGTCCAAAATGCATAAGTGACCCTCCTGTTTCGATGATTGAGCCTCATAATAATGAGTCAAATCAGAGAGATTTTCTGAACTCAAAGAGGACTCATTCTACAACTTATAGCTCAGCTGTACAATACCCTAACTTACCCAACACCCACAGAAATGGATCCCATCAAAAGCAAATAAATAGGCCTCAGAATCACCAGGTCCCAGAGCCCAAACCAACCTGGAGTAAGGGATCTTCACAAGACTCCATAAAAAACATCCCTGGAACTTATGTAGGTGTGGCTAGCCCCATACTGGCTTCTACTCTACGGGGCAAAGATGGACAAGGGTCTTTTGCAGATGAATTTCAGAGTTTTGCAAAGCAGGAGTTTATATCTATAATTGACCAAGGAGAACATCTGGCCTCAGGAGGAAAGAAGCCATCCTGTCTGGTGAAGGGCAACCAACATGCTCACAGCGTCAAGCATGTTAAAAACACCAGCTCAGCCATAACTAAGAACTGTCCCTCTAAAGGAGCCCTAACGACTGCCCTGACAAGCTCTGCCACTGCTCAGACTCATCAGAAATCTGGTGCTGGCAAAACAGCAGTGCCGTACTCTATCACTGTTGTCAATCCAGCTTGGCAGAAGCCACCTCTTCTTCCGCACCAAGCCTCGTCTGTTCAGAGAAAAATCACACAAGGATCTCCAAAGATGAAGGGCATCACAGCTACAGAAGGATCTAAGTTTCAGAGTGCCCAGCAGAGCCCGTCCAAACCGGAGGATGATAAGTGGGAGAGAATACAGTCTCCCCTGTCTAACCTCGCGTCCATCGTAAAGCAGCAAGCTCTCGAAACAACAGCACAGACATGCGAAGGTAATACTCAAGCCTCACCTGTCGCATCAAGAAAAGCTGATGTTCTGAATCCACTCTCTGGGAGCCAAGACACCCAATGCAAACAGACTTGTGCTTTTGAATACCCATCATACTGGTCTGTGGAAAAATGGGCTGGTGTGCCATCTCAAGGGGATTCAACTCAAGCTATGAAGAGGCACGAGAAGGTGAACGCCACTGAGCCTGTAGAGAATAATACTGAGTTAAACACCAGCCAGGGAGAACACATGGGACTACAAGCAAAGCAAGGCTCCTCAAAGCCTGCGGGCCAGTCTCATCTCTTTGGGAGCAATGCATCAACAAATGGGAACAGGATGGAGAGCAAACTAGCCCAGGTGTTAGAGGGGGAGATGTTGAAGAAAGAAAGTGGGGCGTCAGACGGTCCTCCGAGTGAAAAATTGGGAGGCATGGTTGCGTCTATTCTTACAGGCCAGTGTGTGGCGGTAGGCGACAAGTTTGAGAAGAAAACAAATGGAACCAAAGAGCAGTCGCCAACCAAAGCAAAAGCTGCTGGcgtcaaacaaaagaaaaccagTCCTAAGAAGGCAGCAAAGGAGAAGACGCCACCGGACTCATCAAAGAAGGCTGCAGGAAAGAAAAAGCAGGACACAGAAAATACTCCAACCAAAGTGTCCTGTCAAAAGAAGCAAAAGAAACAATGTGCACCTGTGCTGGAGCAGAGTCTATCAGCGGTGAAACTTTCTCCACAGAGTACAGAGCTGACTCCGAGGGACAAGATCAGTCCCAACAAGGTTGAGCAACTAACCCGCAACAAATCAGATAGCGGCAGCAGTGCTCCGAGTGCAGAGACTCCAGTGTCTCTCAGTCGCTCTGCTCTATCCAGTAAGGAGGCCGAAGCTACAGGCAGCTCCTTCCCACGGCTGAGGAGAGGACGACGGCGAGCTGATGAGGCTCGACTCGACCTCTGGGGCTTTGCAACACCTTCCCCTCCACCCCCGCAAATGCCTCCTCCCCCAGTTTCCCCGTCACCCCCCGTGACTCCCACCCAACCCATTCGCCGTCCGAGAGGGAGGCCTCGCTCAAACCCCCTGCCTGAGCGAGTGATTCAGGGCAAGGGCAAGACAGCCAGTGCAGAGGGTGACATGCCTGCCCCCAAGAAACGCCGGCGATGTCGTAGCAAAAAGTATCAGACTGGGGAATACATCACTGAGAAAGACAAGCTGGAAGATGGAGAGCACCTTGAAGAATCTGAATCCCTGAGACAGAACCGCAGAGTCCCAGCAGAGCCACAGGCGCATCAGTGTCCGAGTCCCACCGCCTGCAGTCCAGAGCCTCCTCCACGGAGACCCTCGTTCACTCGCTCGGGGTCGGTCCGCTACCAGGAGAGTGAGGTATCTCCAGAGTTCAATGACAAGCCTTCAGGGAAGAGGAAGTTCAAAAGCAAGCACTTGAGTGACAACGAGGAGCAAAAGATTAAGACCAAACGCAGCAGCTTGGGCAAGCGCGCTGCCTCACTCGCCCTGGATGATGGTGGTGCTATTGTAAAAAGACCAGAAAGCCCCCCACCCACTCCAAAAAGTTTGCCGTCATCTCCTTCCAATAAGAGAGGCTCATTGGGGAGATGCAACGGCTCAGACTCTCCACCAAAAAGGGCTGTTCCTCCGGAGGTTCGGCGGCTGATTGTCAATAAAAATGCCGGGGAGACTTTGCTACAACGTGCTGCACGCTTGGGCTATCAAGATGTAGTTCAGTACTGTCTTGAAAAGGACGTCAGGGAGGTGAATCGGCGCGATAATGCCGGTTACACAGCTCTCCATGAGGCGTCCTCTCGAGGCTGGACTCAGATTGTCCAGATGCTGCTAAAACACAGCGCTGACGTCAACTGTAGCGCCCAGGATGGGACACGGCCTCTTCACGATGCAGTAGCGAGTGATAACCTTCCTATAGTCTGGTTGCTCCTGAACCACGGTGCAGACCCGACTCTGGCCACCTACTCTGGACACACTCCAGTCAAACTGGCACATAGCCCGAACATGAAGACCTTCCTCACAGAATATTTTACAGACCTGGAAGGCCGCAAAGAACAGGATCTCAGTTTTCCCTGGGATTTCTACAGTAGCTCCCTGTTTGAGACTGACCAGGAGCCATGCTGGGACTTCCTGCTGTCGGAGCAGAAccaggagctggaggaggatgCAACAGGAAGGACTGAGCCGGACTCGGACAAAGATTGCCTTCTGTTTGAGTTCTCCTCCGAGCCTCTCTTACCCTGCTATCATGTTCAAGTGTCATTAACCCAGGGCTTTTGCAACTGGTTTCTTCTGACAGACGTCCTGAAGCGTCTGAAGATGTCAGCGCGGATCTTCCGGGCGCGATACCCACACTTGGAGGTGGTGAGTCTGTCCCGTGCTGAGCTCTGGAGACAGGTATCGATCAGCCAGGTGAGCTCTGCTTTGGCTTCACCTTACAAAGGCCAAAATAAGGAGGAGGAAGATAAGGAAGAGGGACTTGTGGATCTGGTGCGATGTGTCCCAGAGCTGCAGAGACTACTGGGCTCCTCCATTCACATCCTGCaagaggatgaggatgaggaggaggaggaagaggaagaggaggaggaggaggaggaggaagaggaggaggaggaggaggagacactgACAAACACAGGGAAGCCTCGCAGCCGATAGCCTCTCTTTCACTTCACTCCTCCACCGTGCAAACTGTTGTCAACCCAAGTCCTTCCCTGCAAGCAGCAGCTCAAAGGAAACCTCTCCGTCCGATGAAACGAGGGTCATGGGTTTTAACTCCAGCGACAGAAATGACACTCCACCTAAAACCTTTGACCTCAGACAGAAGGGACTAAGTGATCACAAGGACCTGCACATGGGAGTGGTCGGTTCAGCTTTCAGGTTCCTATCAATAGGTATATTTGAATACATGAGAACTGTTGAGCAAACCTTTTGTATTGATTATGTATGTACATGGTAGTGTATATGTATATCTTGCCATCAGGGTTAAAACATTTGTTTATATAAATGTATTCTTGTGGCTAAAGAATTATGTTGTTTAGGACtttttgtttgagtttgttCCCAAGGGAAAGCGATATTTTTTCGGGAGATAATCCAAGACTTTTATCTTGGTGAACTGTTGCGTAAAGCTAAGACACTTAAGTCAGGGAGGCCACTGGCCCAGATGGTTCCTCTGTCAACCTGGGAGACCTGGAGACCTGCAGAGAAGAGACCACGGCACATAATCATCAAATATAATGAGAGCCTCATTTCCATTTTTCTCCACTGTTTCACTTTTCACTTTATCCTCTCACTCTAGCttacaatgttttttcttttttttttcttcaacatttCACAAAGTAAGCACGGGCAGCACGGAGCTGTCTACGTCCCTGCACGCAGTATGAAATAATGTCTTTTTGGACCTTGAGATTGAGAGTTTGTTTACAGAGCTGGACAGATAGTAGTGTTCTCCACTCCCCAGGTTGCACTCCCTCCTAAACTGATACATAACCCTTTGGATCTCTCTCAGAGGAAAAGTGGTACCATCTCTGGAGTCCAGAGGCGGCTCCTGTGTCTGAGGAGCCCGAAACGCCCTCTTAACTGCAGCCACGTCCAATATGGTGTTCCCAGATCCCAGAGTGCTTTGTGTTGCAGTGTTTTATTTACACTGTTTGTTGTGCTTAATTTAATAGTCATTAATATATTTGACCTCTTGTGTATCTGACATGCTtatctatgaaaaaaaaaaaattgctttgtATGGTTGGTGCTtcattttgaaatgtacttattAGGATCCCTTTATTCTGAGATTTTCCTCCCTCATTCAAGAACAGTATTTTAAAAAAGAGAAGCTAAAGTACAGTTGTATTGTACTGGTGCTAAGACAGATTTTGTGTTGACAATCAATGTTTTGGTTTGAAGTCACAAACTAATAAAAGATATTTAAGATGAAGAGACTTAAGGTGTAAAGAAAAGTATAGTTTAGTTAAAGAAAACGGGATACAGCACGACTGAGACTGAGCAGTGTGTGAAGAGCCTTTTATTTGATTCTTTTATAAGAAATCAACAAGAATAAAGCATGATTGTAAATCATAGTTATCTCTTTGTTTTGTCAGTTGGATTATTATAATGATAGCTGAATTGAATATTCAGAGCGGAACTCTCCCTCAGGTGTATTTCAAATAATTCCTTCTGCCTTAGACATTTTACTGAATAAAGAGAAATTATACAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU144841 lncRNA upstream 11062 24857848 ~ 24859722 (+) True G107801
TU144827 lncRNA upstream 52633 24813648 ~ 24818151 (+) True G107790
TU144805 lncRNA upstream 312545 24556621 ~ 24558239 (+) True G107770
TU144714 lncRNA upstream 442976 24427274 ~ 24427808 (+) True G107709
TU144713 lncRNA upstream 452491 24417591 ~ 24418293 (+) True G107708
TU144847 lncRNA downstream 14109 24907352 ~ 24937765 (+) False G107803
TU144845 lncRNA downstream 15663 24908906 ~ 24911418 (+) True G107803
TU144860 lncRNA downstream 36496 24929739 ~ 24933695 (+) True G107814
TU144864 lncRNA downstream 50307 24943550 ~ 24944540 (+) True G107818
TU144865 lncRNA downstream 52084 24945327 ~ 24945704 (+) True G107819
XM_039812762.1 mRNA upstream 23891 24840186 ~ 24846893 (+) True nox1
XM_039812760.1 mRNA upstream 30723 24824055 ~ 24840061 (+) True xkrx
XM_039813156.1 mRNA upstream 286917 24569048 ~ 24583867 (+) True LOC120566612
XM_039813157.1 mRNA upstream 286917 24569048 ~ 24583867 (+) False LOC120566612
XM_039813158.1 mRNA upstream 302137 24559256 ~ 24568647 (+) True taf7
XM_039813949.1 mRNA downstream 27064 24920307 ~ 24927968 (+) False srpx2
XM_039813948.1 mRNA downstream 27070 24920313 ~ 24927968 (+) True srpx2
XM_039813951.1 mRNA downstream 27974 24921217 ~ 24927968 (+) False srpx2
XM_039813958.1 mRNA downstream 54765 24948008 ~ 24977281 (+) False zdhhc9
XM_039813957.1 mRNA downstream 59218 24952461 ~ 24977281 (+) False zdhhc9
TU144828 other upstream 27543 24841839 ~ 24843241 (+) False nox1
TU144826 other upstream 62083 24805200 ~ 24808701 (+) True G107789
TU144527 other upstream 1005510 23855525 ~ 23865274 (+) True LOC120566416
TU144403 other upstream 1244495 23590328 ~ 23626289 (+) True G107487
TU144281 other upstream 1375795 23492844 ~ 23494989 (+) True G107386
TU144869 other downstream 179970 25073213 ~ 25097002 (+) False apln
TU144871 other downstream 179970 25073213 ~ 25097002 (+) False apln
TU144872 other downstream 179970 25073213 ~ 25097002 (+) True apln
TU144873 other downstream 179970 25073213 ~ 25097002 (+) False apln
TU144875 other downstream 179970 25073213 ~ 25097002 (+) False apln

Expression Profile