RNA id: XM_039813780.1


Basic Information

Item Value
RNA id XM_039813780.1
length 2235
RNA type mRNA
GC content 0.54
exon number 3
gene id nocta
representative True

Chromosome Information

Item Value
chromosome id NC_053121.1
NCBI id CM020918.1
chromosome length 40300294
location 12073595 ~ 12088905 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

ttaaatgtatacGTAAATCCGTTTgcgaagaaaaataaaacagtcaGGTACACTTTCAACGAAGTGTATTCACTTTGTATAGTCTATAGTCAGCTCTAACGTATGTTGGTGGCCTCGGTAAAAGCATTATGGACCAGCCCATCATTGGTAAATACCTCAATAGTCGGTGTTCCGTGACTCGCACATGATGTGACGTTTACCGGCTTCTGTTACCTAAAAGCACAAAGACAAAAGGAAGTTTATCCTGTCATACCGCGGGTAAGGGGAACATTCTCACGCTTTTTGTTGGACAAATGGCTCGGTTTCCTTTAGGTGAAAAGACAGCGACACACTCCCGGTAACTTGCGGTTCTTTCTCCGTTAGACTCCCTAACGTTACAGTAAAAAAATGAATCCGGCTCGTCGCTGTTCGGCTTTATTGAGTCAGCTGTGTGTAACCTCGCGGGGTGGGTCCACAGCCAGGAGACCGTTGTCCCCGGGACCAGTCTCAGCCCTGGGGGGAACACGGTGCTGTCGCTCCGGTgtcggaggaggaggacgaggagcgGGAGTCAAAGAGACCTGTCCCCAGCCGAGGCAGAGTGGAGCACCCACAACTGGGACAGCACCAGcttgtCCAATgggtggcagcagcagcaggttgtTTGGTACGTTTGCCCAGTCACTGAACCGCGCCCCGTTGGCCCAACCAGCCCCGTACCCAGAGGAGAACCCAGACCAGGACCTGGCCCAGACCGACCCGGACCAGCTGCTCCGAGAGTGTGAGGAGGCCCTGCAGAGGCGTCCGGCCCGGCCACATCGCCATCTGGTCTATCCCAGCGGCACGGCGTCCCGCCGCCACAAGCACAACCCAGCCATACGGATCATGCAGTGGAATATACTCGCACAAGCTCTCGGCGAGGGGAAGGACGGGTTTATCCGCTGTCCAATGGACGCTCTCAACTGGCAGGAAAGGAAGTACCTGATCATGGAGGAGATCCTCACCTACCGCCCCGACATCCTGTGCCTCCAGGAAGTGGACCACTACTACGACACGTTCCAGCCCATCCTGGCCAGCCTCGGTTACCACGGCAGCTTCCTGGCCAAGCCCTGGTCGCCCTGTCTGGATGTGGAGCAGAACAACGGCCCCGATGGCTGCGCTCTGTTTTACCGCCGCTCGCGCTTCTCCCTCCAGGCCACCGCTCACCTGCGGCTGTCGGCCATGATGCTGCCCACCAACCAGGTCGCCATCGTCCAGACGCTGATCTGCCAGGTGACGGGCCAGCGGCTGTGCGTGGCCGTCACCCACCTGAAAGCTCGCAGCGGCTGGGAGAGGATGCGGAGTGCGCAGGGTGCCGACTTGCTGCAGAGTTTGCGCAGCATAACGTCCCAGAGTAGCAGCGGCCAGACAGAGGCGGCGCCAGGCACCGTCCCTCTGGTGGTGTGCGGGGACTTCAACGCGGAGCCCTCCGAGGACGTTTACCGGCGCTTCAGCTCCTCCGCCCTCGGCCTGAACTCGGCGTACAAGCTGTTGAGCGCTGACGGACAGACGGAGCCGGCCTATACCACGTGGAAGATCCGCCCCTCTGGAGAGAGCTGCAGCACTCTGGACTATATCTGGTACACCCACGGCGCTCTGAGTGTGGACTGCCTTTTGGACATTCCCACAGAGGAGCAGATCGGCCCCGACCGCCTGCCCTCCTACCACTACCCCTCTGACCATTTATCACTGCTCTGTGACATCAGCTTCAGGGAGGAGCCCCATAGGTTGATGTAGGCTGCCAATCACAGCACCACGGGACCAATAGGAGGACTGAGAGTGGACTGCTTGAAACGATACTCAACCTTTTTACTGTAAATCGGGAGTGAGGAAAGTGAATGTGATACCATCTGCCAGATTGAGTCATGGAAGTGAAATCTGATTATTGTGAATAATTCGCATTGAGACACAAACCACGTTCTGTAATGTTgctattatttaaaacatagtCATAATGGGGAACATTAGAAGAAGTGAAATGAGACATCGTAACCTCACTTCTGATGGAAAAGCTACTTCTAGCTTTACCAATAATTTGGGATTTGCTCCGTTGACTTGTGTAGAGGTGGGTGAGCCTGTCAGCCCCATGTTTCTTTGagctttttaaagtgctcatattatgctttttggctttcttttcccttttttatagtgttatatatcttttttttgtgcacgttataggtttacaaaatgaaaaagcccaaagactacccc

Function

GO: NA

KEGG:

id description
K18764 NOCT, CCRN4L; nocturnin

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU140475 lncRNA downstream 122546 11945760 ~ 11951049 (-) True G104604
TU140432 lncRNA downstream 175921 11895623 ~ 11897674 (-) True G104571
TU140420 lncRNA downstream 214558 11849735 ~ 11859037 (-) True G104564
TU140421 lncRNA downstream 214558 11852445 ~ 11859037 (-) False G104564
TU140412 lncRNA downstream 223873 11849302 ~ 11849722 (-) True G104562
TU140548 lncRNA upstream 78928 12167833 ~ 12168153 (-) True G104659
TU140553 lncRNA upstream 184347 12273252 ~ 12274308 (-) True G104664
TU140641 lncRNA upstream 701563 12790468 ~ 12790707 (-) True G104733
TU140645 lncRNA upstream 843741 12932646 ~ 12932852 (-) True G104737
TU140657 lncRNA upstream 1016710 13105615 ~ 13105883 (-) True G104749
XM_039813568.1 mRNA downstream 76352 11970243 ~ 11997243 (-) True LOC120566888
XM_039814277.1 mRNA downstream 146391 11900659 ~ 11927204 (-) False ccdc142
XM_039814275.1 mRNA downstream 146407 11900659 ~ 11927188 (-) False ccdc142
XM_039814280.1 mRNA downstream 146407 11900659 ~ 11927188 (-) False ccdc142
XM_039814276.1 mRNA downstream 146407 11900659 ~ 11927188 (-) False ccdc142
XM_039812585.1 mRNA upstream 662290 12751195 ~ 12760002 (-) False LOC120566266
XM_039812583.1 mRNA upstream 662290 12751195 ~ 12760002 (-) False LOC120566266
XM_039812584.1 mRNA upstream 662290 12751195 ~ 12760002 (-) False LOC120566266
XM_039812581.1 mRNA upstream 662290 12751195 ~ 12760002 (-) False LOC120566266
XM_039812582.1 mRNA upstream 662290 12751195 ~ 12760002 (-) True LOC120566266
TU140484 other downstream 80917 11964979 ~ 11992678 (-) True G104610
TU140100 other downstream 2405644 9642552 ~ 9667951 (-) False LOC120566907
TU140082 other downstream 2434999 9637996 ~ 9638596 (-) True G104258
TU140040 other downstream 2503699 9564802 ~ 9569896 (-) False LOC120566283
XR_005640546.1 other downstream 2615732 9357277 ~ 9457863 (-) False abhd18
TU140545 other upstream 53795 12142700 ~ 12143744 (-) True G104656
TU140757 other upstream 2061587 14150492 ~ 14256041 (-) True G104837
TU140857 other upstream 2448196 14537101 ~ 14538469 (-) False uvssa
unassigned_transcript_470 other upstream 2615127 14704032 ~ 14704103 (-) True trnaa-ugc_8
TU140912 other upstream 2646386 14735291 ~ 14739480 (-) False LOC120567441

Expression Profile