RNA id: XR_005640507.1


Basic Information

Item Value
RNA id XR_005640507.1
length 6220
RNA type transcript
GC content 0.47
exon number 5
gene id nexmifb
representative False

Chromosome Information

Item Value
chromosome id NC_053121.1
NCBI id CM020918.1
chromosome length 40300294
location 17522141 ~ 17577811 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TGTTTGCATTTCGGGGGAAAGACGCATCTCTGATACTGTCCAAAGCAGCTGAGAAGGATCCCATTGCGACGGGGGAAAAACGCAGTTTGGGCGCATACGCTCTGGAGGTGGGACAGTCAAAATGATGCGTAGGAGGTGAAGCGTTGAGCCGTATTGATGGATGTGTTAACAGATAGCAGTCTCACATTGATCGTGAAGACTTCAGAACCAGAGAAtgcaaatgtagtggagaaCACAGGGGTATGTGAGCAGAGTGGTGATCTGAGTCTGTGCAGCATCATAAAtgctgctctccctccatcctcacCTCCTCCTGCCGCTGAGACTTCACAGCGGGCCTGCCCAACACACCAGAGGACCACGCCGACATCAACAACCCTCTCCCTGCCCCTTTGCACTGACTCCTCTCTGGGCCTGACAGCGCCCCCCTGCCCTCCCTCCGATGATGCTCCAACTGTAGTCCCCCACCTTCACCACACTCCCACACCACTTCCCACCCCAGCTGTAAGCTCCTGGGTCCCGACAGGAGACACTCAGAAGACTTCCCTTCTGTTGCCTGTTTCCCTCCCTCTGTCAGCTACAATGATGGAGCCTGGCACTGTGTCTGCCCTGACAGAGGAGTGTCTTCTTCAGCCTACCCGCACCTGCCTCGGCTGCTTCATTGAGACCCGGGATGCTACTGACCCTAATACCATCCAGAACCCACCTCATGACCCTAACACCAACCCTGACACAGAGACTGGACTAAGTGTAAGGATAGGCGATGTGAGCCGAGAGGACTTCTCTGACATCAACAACATCAGCATCCAGTGCCTGAGCCATGCTGGGGAGGCAGTGAGTCACTATGGAGAACAGCTCCTCTCTGACCAGCTACTTAGCTTTCCTCTGCCGAAAGCCGCAGTTGAGGGCAAGAGAGTTGATGGAAACAAAACGACAGAGGACTGTGATGATCCAGAAGATGATGCAACATCTAAGAACTTGTACGAGGGACTGTTACTGGACAAAGTGAGCGGAGAGGAGGTTCTGCTGGCTAACGCCGGCCAGGACTGGGGCTACTTTGAGTCCTTCATCAGTGAGAGTAAGATGGAACTGCTGGATCTTTGTTCTAAGAATGAACTGTCAGTCAACCTCTTCTCTGAGGAAGATGTTGACAATCTATTTGATGACGAAGACGATGATTCGACTTTAAGCAGTGATGTCTGTTCGCTGAAGATTCGTTACGAGTCTTTCCAGGACAACATGAGGGAAAAAACAAATGTGCTCCAGGAGGAGACGCAGTTCAACTTTTTCCCTAGTGTCCTGGCCAACTGTgccaagaaagaggaaggagcgGGAGTATTGAGGAGGAGTGCTGAAGAGCTTCAGCCCAAAACGGATGAGCTCATCCTGGAGACAGGACAGGAAGGAAAGGCAGGGGACTGCAGCGGTAGGAGCCCCCTTGACGGTTCCCAAGGCTCACCCATGTCCACTCCCAAAGTCAACTACCTAATGGACTTCAATTCCACAGAGGAGTCAGGCGAGTTCAGTGATGACAGCTCCTGCACTGGCTCCTCCTCAGACACCCTGCAGGAGGGCAAGTTTAAGAAGGGACACTCAAAGAGATTGCTCAGCCCCTCTAACCCTCTCAACTATGGTTTGCGCTCCAAGAGAAAGGTTCGATACAGTGACGACTACTTATATGACGTCGACTCGCTTGAGAGTGAGAAGAAtgcagagaaaaaagagaaggcTCCCTCTGGtcaaaaagaggaagaggatgtGGACTGGTGTCCCAAAAAACGTCGGAAATCCTGTCGTAAAGAGCCGCCAGTGGTCATCAAGTACATCATTATAAATAGGTTTAAAGGAGAGAGACTCATGTCAGTGAAACTGGGCAAGTTGGACCCTGTGGATGTTACTGTGAGCTTAAACAACGACACAGTAAGCAAATATGAGACACTGGCTCCTTTGAAGGATTTCTGGCAAGAGaggcaaagagagagacaggaacaGCTTAAGCTGGCTGCCAGAGATAAACAACAACGCGGTTTTCATCTAAACGGACGCCATCATCGCCCTTTTAATTCTAGTCATCCCAAAAGGAAATACAAGATTGCAAACAGACTTAAGGTTCAGAGGATTCACGCTGTGGAGCAATCGGCAACAGTACAGTGCTCCCCTATCTCTGATCGGGGCCAGGGATGTGTCACTAAAGAAGAGGCCACCCCCACGGTAGGGGGAATAATAGCAGCCCCCAGCCTCCCTGTCACATTAGACACAAACTCCATCACGCACACAGTCACAGCCAAGAGCCGCTCccaggagagggaggagagggaggggaggagattGGGAGGAAATAAAACAGTCAGGATAAGGAAATTCAAAAGcgaagccaggctgaggagcaagaaaatgaaagaggcagaaggagaggaggggaggagcgTGACAAATGAAACGGATGCCTGTGTCGCTGCGGCACAGATTGAGGACCCTACTGCTGGGTTAGAAGAGGCAGGCATTAGCTCAACTACAGTCAAACCCAATTTCTCTGACAATTCCACCACCGCTCACACATCTGAAGAGAAATTCCCCTTTGTTTCGTCCACCTGCTCTCCTGAAAAAGCTCCTTCCTCAGAGGCGGTGGAAGCGGGTGTCCCTGTTATCCCGGGGGGCTACCTGCAGACCCTGTTAGATGCTACAGACTCGTCCAGTGGAGCAACTATCTCTTATTTCCCCCAGCAGCCCTCTAGGCAGCAGTATCCTCTGGGGCTATCCCTAGAGGAGAAACAGTTTTCTTCTCTTCAGCTCGCTCAGAGCtgtgtcctctctcctccctctgagtcAGAGCTCCAGCAGTCTCCCCAGAACTGCCCAAGTTTCCCGCAGTTGTGGCACCCGCAGCTCTGTGCAAGTCACAGCCACAGCTTTGGGCCTGAGACCCCTGAGACTCCCATCTTACCCAACAACTTCCCAGCTGCTGTGCCCCTGAATGACAGCCTGCCAGTGTCTAACTACAGCCAGCTGAGCCCTGAGGATGACAGGCTACTTTATGAGAAGAGCTACCTGACTGAGGCTGGGCTGCAGCCTGCGGCAGATCTGCAAGTGTGTCAGTCTGCCTGTGTGGAGGGCCAGGTGCAATACCAGAGAGGGTCCCTGTGCACAGACAATGGCAGGCTCATCAGCTATGACTCAGTGGGCTCTCTGTCAGCCTCCTCCAGCAATTACAGCTCCCTCAGCCTCAAGTCTTGTGAGCgagagggtgaggaggagggCCGAGACAGCTTCTTAGCTCATTGCAGTCCTAAAGTGGTGATTCAGCAGAGTGTGGATTCCCTTACCCCACTCAGGGAGTCCTCAGACCTGCTGGACATCTCCAACTTCACCCCTGACAAGTTTAGGCACTCCTCACTGTCAGAGCTTTCCCCTCCTGAGACCCCCAACCTGTCCCCGCAGGTGGTGGGGCGTGAGATGAAGATGGCAGGCAATGTTGGAGAATACCAGGATGTGAATGATATGACTATGGACTGCAACAGGGAGGTAAAGTGGAACTGTGACGTTATGCAGCAACAAGAGCACACAGTAAATGCATACACAGTGGAAGACAGCCAGTTTCCGCTGCACAACTTCAACAGTCAGGATGTGTTACGTTTAGATAAAAAGGAGCTGGGAGTTACCGAATTTGATGAACAGACTGGTGAGATGCTGGCTGGTGCGAAAAGCATAAAGTCAAAGAGGAAAGGCAATTGCAAACAGACAGCTGCGGGACAGACCCCAAAGAAAGTCCGGGCTCCCAGAGCTCCTAAGTCAGAAAAGGTCAAGACCCCCAAACAGAACTCGCGTTCCACCAAAAAGATAAAGGCCATGTTGGAGGGTAAGGCAGCAAAGAACCAGGCAGGAAGTTGTGGCACAGGCCTGACTGACAGTAGCAGCACTGGGGACTGGTCTGGCACCGGCTGGTCAGAGAGCAACAGCCTGGTTGGGGATGACCAGAGAGAATTTGAGGAGCCCTCCAATATTCTGTCCAACATTGTCTCTGGCATGGCTGAGGTCCAAAGGTTCATGATGGCCTCCATTGAGCCACTGTGGAATCCCATGTCGGAGGCCTGCATGCCCTCTGAGGCCAATAGCCTGAACCTAAAGACCCTCAAAATCTTGGCTGGCACAGAGGCCGACCTGAAGAAAAAAGGAGCTGCGCTAACAGGGACTGGGAAAGGCAGAAAGGCAGGGGGAAAGGGAGGAAAAAACCAGGCCAAATTCAACCCCTCTCATCCCTTATTCCCTCAACTAGCTCTGGGCTGTAACATGTTTGATAAACCCAGCTTTATTAACCCTGGGCCTGCACACAAAAAGCTGTACCGCCACAAGACCAGTGCAAAGTTCCCGCGGATTGAGACACTGAAGGGAAAGCGAGCTGAGAGAGACCCAAATAAGGACATAGCGCTAATGACCTCTTTTGAGAAACTGAGAATATGGATGTCCTGTTGTTGCTGTCCTTCATACACTGCCTGGCTCATTTCAAGAAGGAAACCTACAATTAATGAGCCCTATTTAAGCCCAAGACATCTTGAAAACACAAGATGGGACGATTTTGTATTAATGACATATCAGACATTGTCTTCTTTTTCCCCACTCAAAGTTGGAATGACTCCCCATTTCCTTTTATcaagtgtttgtttttcctctggAGTTTAGAGGAACTGTTTATctaaatttacatttttacgCCTTGCAAATTCATAAAAGCTCCACCCTCAGAGTATTTTTGTCAATGTTGTTGTACAGGGACATgcaatatttgcaaaaaaaagatGATTATAATCTTAAAATCAATGTGCCAAAAGTAACAATGCTGTGTAAATGACCTCTTATATATGTGTGAATATTGGCTGTTCCTCTTTTCTATCCAATGGAGTATTGGCTGCTCGGGTTGGAATCCTTACAGAGACTTGCCACTACAGGAATTCTTTATTTGGaacttttctctcttctctgatGAAAGGCACCAACAGCTGGCAGTGGTACACCACCACTCACTAAACCAAATCAGAAAGACTCTGAAATTTCCTCGTTTCCCCCACTTTGTTTGCCAAATTCAATTTACCTCAACATCGCCTGGCACTGAGAAGCAACAAAAGAGAGGCGAAGGGGAGATCTACTCTGAAGGCTACTGTAGAGGAAGACGATGAAAAAAGAGATGATCAAACGAGCTTTCTCTGGACCAGGAAGAGTGCATAGTGCAGATGTTTGAGGTGTATCAGGGTTAGGACCAAGACAAGCTGCTGCATGGGAAGCTCCACATGGGCTGCAAGCCCATTTAGTCTGCCTTCTCTCATTTCTGCCTATTGTCAAATTGAATGTACTTCTCTAAGTTCatagtttcttttctttttttcttcttttttgttttgaaaatgtgccaCTGTTGAGCTGCCTCGTGTTAATGGTGCTAAGAATGCTGacaattgttttcttttcttttttgatattttgttttcccagagttaacaaaaaagaaatgcaaaatagATTAGGTACCTAACCCTTTTTATGAATGTATATTATAATGTTATGTTTGATGTATTCACTTCATGATTCTTTGACATTGATTGGaattcctttttctcttttcattaaAAGATTACCGAgctttatatatactgtctagaGTTGTTACCGGAAGGAATCTTAATGAACTCTTGACACTACAAAAtcttgtatattttttgtgtgcCAATTTGTAACATATTTTGTAAGTGTATATTTTTCTTAGAAAGTGCTGTgaagtatttgtgtgtgtgtgagtaaccTTTTATGCGCCTCTATGGGCAGTGGAAAGGATATACAATGACAAGTTTCTGGTTTTAAAAACCAAAATATGAAAGTATCAACAGAAAACtagaaatatttacattttgttggGAGTTTTGTATTAAGACCATGATCTTGTTGTGAGAGTGTTGTGTTACTGTGCAAAACACAAataagcaaagaaaaaaatgaaaacctgggaaaaaaatataatttgtgaACAATTTGCTGTTTTATAGATTTTCATGTAAATTATTTgagtattattttgtttttttgtttcgtTGTAACTGTTGCAAAGGTTTTAAATATTTGTGATCAAGCCTGTATGGTGATAATGTAATATTGGTAACTTGCTGAGTTTTGTAATAATGTTTATGGAGTAAATATACAAATTAAAATAAGATTTTGAATGCTGCTTTCTGAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU141792 lncRNA downstream 186189 17334404 ~ 17335952 (-) True G105597
TU141793 lncRNA downstream 197186 17324460 ~ 17324955 (-) True G105598
TU141778 lncRNA downstream 354383 17166988 ~ 17167758 (-) False frmpd3
TU141770 lncRNA downstream 368548 17152171 ~ 17153593 (-) True G105578
TU141755 lncRNA downstream 370573 17142146 ~ 17151568 (-) False tmsb1
TU141943 lncRNA upstream 90273 17668084 ~ 17730694 (-) False kif3a
TU141942 lncRNA upstream 151780 17729591 ~ 17730694 (-) False kif3a
TU142017 lncRNA upstream 177403 17755214 ~ 17755915 (-) True G105749
TU142028 lncRNA upstream 250811 17828622 ~ 17831148 (-) True G105759
TU142018 lncRNA upstream 279273 17857084 ~ 17859686 (-) False LOC120566288
XM_039813796.1 mRNA downstream 2665 17510949 ~ 17519476 (-) False rlim
XM_039813795.1 mRNA downstream 2666 17510949 ~ 17519475 (-) True rlim
XM_039814447.1 mRNA downstream 11599 17507123 ~ 17510542 (-) True glod5
XM_039812741.1 mRNA downstream 23405 17494973 ~ 17498736 (-) True LOC120566359
XM_039814164.1 mRNA downstream 40023 17480296 ~ 17482118 (-) True LOC120567262
XM_039813797.1 mRNA upstream 9865 17587676 ~ 17618547 (-) True abcb7
XM_039813798.1 mRNA upstream 47746 17625557 ~ 17629897 (-) True zdhhc15b
XM_039813799.1 mRNA upstream 47746 17625557 ~ 17629641 (-) False zdhhc15b
XM_039812936.1 mRNA upstream 101889 17679700 ~ 17723014 (-) True atrx
XM_039812937.1 mRNA upstream 103296 17681107 ~ 17723014 (-) False atrx
TU141756 other downstream 370573 17142146 ~ 17151568 (-) False tmsb1
TU141625 other downstream 558667 16957662 ~ 16963474 (-) False rab9b
XR_005640433.1 other downstream 847286 16592908 ~ 16674855 (-) False gria3b
TU141311 other downstream 1654286 15866067 ~ 15867855 (-) False hnrnph1
XR_005640446.1 other downstream 1903033 15604604 ~ 15619108 (-) False tspan17
TU142030 other upstream 205749 17783560 ~ 17795223 (-) False LOC120567448
TU142092 other upstream 409447 17987258 ~ 17991871 (-) False sfxn1
TU142254 other upstream 725458 18303269 ~ 18305695 (-) False reep2
TU142417 other upstream 1109977 18687788 ~ 18691410 (-) True LOC120566257
TU142573 other upstream 1638178 19215989 ~ 19219144 (-) False LOC120566717

Expression Profile