RNA id: XM_039813819.1


Basic Information

Item Value
RNA id XM_039813819.1
length 5470
RNA type mRNA
GC content 0.47
exon number 23
gene id pdgfrb
representative True

Chromosome Information

Item Value
chromosome id NC_053121.1
NCBI id CM020918.1
chromosome length 40300294
location 19176247 ~ 19203101 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GTTGCCAATAGAGACTGTCTCAGTTTACCTCCAGTTGCTCGCCAGTCCATTCATAAACAAATCACTCCAGCCCTGGACCTCTGAGCTGCTACCTAAGAACAACAAACAGAACTCAACCTGTATTTTGAAgttttctccctctgtcttttctctttcttccttcactcccctttttttttttaaaacttcccTCTATTGCTTTTTACTCAACTCCCACTCACaattccctcctctcctccctctccaacTCAATCTTACTCTAGCTTCACCAGGGCCGGACCACTGGCTCCCTCCTCTGTGTGAATCTGAATGTGAGTCAGGGAAGccgtgtgtagtgtgtgtgtctccattgGGAACACTTCTTTTTAAACTTACAGCACTCTTTGGGAACGGTGGGCAGACTTGTCCAGAgtgtgagagaggagaggagaaccCCATGGTGCTGTGATTTGACTAAACAAACAGCTTGGCTCAGAGCGGTACCTCCTCCAGCGCACTCCCGGGACAGCAGAGATTAACCTCAGACTCTGAACATCTGAGGGATCTATACATCTGAGGCAGCAGCCCCCGGAGAGACAACCAGCTGGACGTCTCTCCTCTGATTTCAGAAGGAGGAGACCGACTGCTGGCCGGCAACCTCCTCGGACAGAAAGGGAAGACTTGTCGATGCTTCTAGGATCACTCTGAAGCAGAACAAAGGGCATTGAAGGCTTCCACCATGAGGAGGGTGACAGCATCCACGCTCCATCTGACAGTCACAGTTACAGCTCTTCTGTATTTCTGCACCGAGCTCTGCTGTCTGGAGATCACACCCGATGACAAAGAGCTGGTCCTGGCTGAGGGCTCCTCGTTCATCCTCAACTGCTCCGGCTCAGGGAACACGACGTGGGAGTTCAAGAGGGACGATGTGCCGTACTTCCAAGTGGAAGTTCAAAATGGTGGTCAAAGCTACCAAATTGTGCAAAGCAGCATCACATCCAGTGCTTTGACCTTGTGGAACGTGAGCTGGAAGCACTCAGGGGTGTATCAGTGCGTTGATCAGCACACTGGAGAAACTAAGGAGGTGGCTGTTTTTGTCCCAGACCCTGATGTGTGGTTCATAGAGAGCTCCCACGGCATGGTAACAAAGACCAGCGAGGAGACCACCGTCCCCTGTGTGGTCACCAACCCGAACATCAAAGTCACCCTGTATGAGAGGGACACTGATCTGCCCATCAGGGGACTTTATGTTCCAAGTGAGGGGTACAAGGCACGGCTGGAGGACAGGACCTATGTGTGCCGGGGAGAGCTGAACGAGGAGGTGAAAGAGTCTCAGGCCTTCTACGTCTTCAGCATTGTCGTCCCAGAGGCCATCGACGCCTACATCAATGCGTCAAAGACCGTCCTGAAGCAGGACGAACCGCTGACAGTAAACTGCACAGTGCACGGAGTGGAGCTCGTGTATTTTTCCTGGGATATCCCCAACAGAGAGGTTGGAGCGGTTAAGCCGCTGACAGACGTCCTGTCCGCCACGAGCATGCGCTCCTGCCTGATCTTCCCTCGTGCCACGGTGGCCCACAGCGGAAACTACGTCTGCTATGTCCACGAGCATGTCCAAGACCAGACTGCCTCGGCCAGCGTCAACATCACCGTGCTCGagCAAGGCTTCGTGGATGTGAAGGCTGCTCagcaacaaaatatttcagccaAGCTGCAAGAGAACGTGGAGCTGAGAGTGGAGATTGAAGCCTACCCCCCCCCTCAGGTCCGCTGGAGCAAAGATGGCATCACCATCAAAAGAGACAAAACCATCACAACCAGACAAGAGCATGAGATCAGGTATGTCACTACTCTCACTTTGGTGAGGGTGAGGACGGAGCAGAAGGGTCTCTACACCGTCCTTGTCACTAACGGAGATGCCACAAAGGAAGTAACCTTTGACTTGGAGGTCCAAGTCCCTTCTCAGATTAAAGAACTGACTGACCACCACCTCCCTGGGAAGAGACACTTGGTGACCTGTGTAGCTGAGGGGGTCCCAACCCCAACCATCCAGTGGTACAGCTGTGACAGCATGCACAAGTGTAGCAACCAGACAGCGGCGTGGCAGCCGCTGATACCAGAGCCAGAGGTGCTGAGCATCCGCAACAATGTCAGCTACATAGAGACTCGTAAAACCAGCCAGGTGCTGAGCCAGGTGACCTTCTACAAGCCCCAGCAGGTCACGGTGCGCTGTGAGACCATCAACCAAGCAGGACTCCTCGACAGAAGAGACGTCAAACTGGTGTCCAGCACACTGTACTCCCAGGTGGCAGTATTGGCTGCCGTTTTAGCCTTAGTGGTCATCATTATCATATCTATCATCATCCTCATTGCTGTATGGAGGAAGaAACCTCGATATGAGATCAGATGGAAGGTGATAGAGTCTGTGAGCCAGGACGGTCATGAGTACATCTATGTGGACCCCATCCACCTGCCCTATGACCTGGCCTGGGAAATGCAGCGAGACAACCTGGTGCTGGGTCGCACTCTTGGATCAGGAGCCTTTGGCAGGGTGGTCGAGGCAACTGCCTATGGTCTCACTCATTCCCAGTCCAGCACAAAAGTGGCCGTGAAAATGCTGAAATCTACAGCCAGGAGAAGTGAGACTCAGGCTCTGATGTCAGAGTTGAAGATCATGAGTCACCTGGGCCCTCACCTCAACATCGTAAACTTGCTTGGAGCTTGCACCAAAAATGGCCCTCTGTACCTGGTGACAGAGTACTGTCGCTATGGTGACCTGGTGGACTACCTGCACAGGAACAAGCACACCCTCCTGCAGTACTATGCTGAAAAGAACCAAGACGACGGCTGCCTCATCTCTGGAGGAAGCACTCCGCTCAGCCAGAGGAAAGGCTATGTGTCCTTCGGAAGTGAGAGTGATGGAGGATACATGGACATGAGTAAAGACGAGCCCACCATCTACGTGCCCATGCAGGAGCAGATGGACAGCATCAAGTATGCAGACATCCAACCCTCTCCATACGAGTCTCCCTACCAGCAGGACATCTATCAGGAACAAGGTGGCGGCGGATTGGACCTGACCATCAGTGACTCTTCCGTTCTCACCTATGACGATCTGTTGGGCTTCAGCTACCAAGTGGCGAAGGGGATGGAGTTCCTTGCCTCAAAGAATTGCGTCCATCGGGACCTCGCTGCCAGGAATGTGTTGATCTGCGAGGGGAAACTGGTGAAGATCTGTGACTTTGGCCTGGCCAGAGACATCATGCATGATTCCAACTACATCTCTAAAGGCAGCACTTTCCTGCCCCTGAAGTGGATGGCACCAGAAAGTATTTTCCATAATTTGTACACCACCCTGAGCGACGTGTGGTCATATGGCATTCTTCTTTGGGAGATCTTTACATTGGGAGGAACCCCCTACCCTGATTTGCCCATGAATGAGTTGTTCTACAGTGCTTTGAAGAGAGGCTACCGAATGGCCAAACCTGCCCACGCCTCTGATGAAGTTTATGACATCATGAAGAAGTGCTGGGACGAGAAGTTTGAGAAAAGGCCTGATTTCTCATTTCTGGTCCACAGTGTGGGGAATATGTTGACAGACAGCTATAAAAAGCAATACAGCCAAGTCAATGACAACTTCCTGAAGAGTGACCACCCGGCAGTTGCCCGCACCAAACCCAGACTCTCTTCACCCTTTCCGATCGCCAACCCAGCATTCGGCTCCCCATCCCCCCTGTACATGCCCCCGGACCCATACGGCCAGAGCCCGAGCCCCGCAGAGTTCAGACAAgaggcagacacacaggaaGTCATGACTTCATACAATGAATACATCATTCCCATCCCAGACCCCAAGCCGGAGGACGTTTTCACTGACGTGCCATCAGAAAGCCCTGCAAGCTCTCTGGCTCTGGAGGAGGAGACCGACTCCATGTCGCAGGACACTGCTGAGACTCTCCCAGAAGAGGACAGGCTAGAGGAGACCAGCGAGAGAGACGCTCTGCTGGGCATCGCCAGGACGCCCGAGGTAGAAGACAGCTTCTTGTAGCCATATGTGGGAACCCTGAGAAAATATCACTATACTGGGAATTATCTTTTTAAACCTGTCTGAAAAAAGGGAACGTGATTAAACTAGAATGTAGCAGAATTGAGACTGAGAGGGCAATCTCTGTATTTCCACTAAGCACTCTAAATGTTTTGCCCTTCTTTTGAGTTTTCTATCAAACTTAGTACCTCTGAAACTAAAATGGTTACAAATGATGTGTATGATGTTATCATCGAGTCATCTCTTGGAAGCTGGCCATAATATAAATACGGTACTCTCCTCAAACTCTTAGAGAAtcagtttacagtaaataaagatGTGTTTACTGTATTTTCTATTGTAGCCAGAGACTTATGAGATAGGTGCATTTTTTTAGTTAGACATATTTAGCCATATGTCTTTTTGGCTCTTATTATTTTATCCCCCTCCCCCGTTACTGTTCGCATCCAGATATGTAgatgttttgctttttaaaactattttattagttttaatAATAGAAAGTGATGAACATAACAATATAAACAAAccatacacaaatatacacaaaatACTGTCCAAACAAGAACAATATGTAATTCCCATATTAGTGGAAATTATTAGCATTATGTCTTAAACCACGATCAGCCATGGAAAGTGTGTAATTAAATGTAGGTTGCATCTTTTCCTAAAGTACAACTGTATTATAATGTTTTAGTAAATGTTATCTCCAGGTCAGACTGATTCTACATGCACTGTTTTACTATGACACAACACTTTCTTTTTACTCACATATTCCATAGTGTCAGACgtttccttttttgttgttgtgaaaaTTATATGAAATGTATGTCATTTGTGAATTTTGAATACTTGTTTTGTATAGGTTTAATTCATAGTTCTGTGCCAGATTTGcactttatttagaaaaatgtgGATATTCATAATGAAGATATAAATATACTCTAAAATAAAGATTGAAGTTGAATAATCTTTTGACTTAAACATGTGGCTGTTACAGTAAATGAGTTTCTGGAATGACAGGTGACTCTCTCAAGTGAAAATACTAAATACAGCGTCTCACTGCCTAAGCACAAGATGGCACACATGAGTGCCTTTGTGTAGACTGACAGATTTTTGTGTTGCAGCTATTGTTGCTTGCTGATATGAAGGGCTAATGTACTCAAGAAACCTAGATATAGCCTTAAGTGTACATGTACAAATAATGCTTTTAGTCTTCTGCTGCATTGTATCGCGTTCACTCACACAATGTTTCAACCGTCAGTACTATAGTATTTACAAGTAGTCCACCatttaaaacaacacattttctgtACTAATTTAAAATGCACAAGATCACTGTATCACAAGCTATGGTACCAAAGCTCTTCTTAACGtttacaaatgtattttttatatgtGACATTTTATATGTTGTAAATGTGACAATAAATGTGTATCATTGTA

Function

GO:

id name namespace
GO:0018108 peptidyl-tyrosine phosphorylation biological_process
GO:0035791 platelet-derived growth factor receptor-beta signaling pathway biological_process
GO:0036120 cellular response to platelet-derived growth factor stimulus biological_process
GO:0001525 angiogenesis biological_process
GO:0016021 integral component of membrane cellular_component
GO:0005524 ATP binding molecular_function
GO:0005019 platelet-derived growth factor beta-receptor activity molecular_function

KEGG:

id description
K05089 PDGFRB, CD140B; platelet-derived growth factor receptor beta

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU142520 lncRNA downstream 42234 19132620 ~ 19134013 (-) True G106128
TU142523 lncRNA downstream 45256 19129286 ~ 19130991 (-) False G106128
TU142463 lncRNA downstream 103505 19072063 ~ 19072742 (-) True G106085
TU142462 lncRNA downstream 105064 19070848 ~ 19071183 (-) True G106084
TU142452 lncRNA downstream 123238 19049374 ~ 19053009 (-) True G106074
TU142574 lncRNA upstream 11699 19214800 ~ 19215918 (-) True G106164
XR_005640452.1 lncRNA upstream 58929 19262030 ~ 19262872 (-) True LOC120566722
XR_005640450.1 lncRNA upstream 59812 19262913 ~ 19265476 (-) True LOC120566720
XR_005640451.1 lncRNA upstream 83975 19287076 ~ 19288469 (-) True LOC120566721
TU142694 lncRNA upstream 109708 19312809 ~ 19314416 (-) True G106243
XM_039813990.1 mRNA downstream 506 19161748 ~ 19175741 (-) False LOC120567146
XM_039813989.1 mRNA downstream 506 19161748 ~ 19175741 (-) True LOC120567146
XM_039814255.1 mRNA downstream 29220 19145238 ~ 19147027 (-) False LOC120567311
XM_039813325.1 mRNA upstream 15973 19219074 ~ 19250436 (-) False LOC120566717
XM_039813326.1 mRNA upstream 15973 19219074 ~ 19250436 (-) True LOC120566717
XM_039813328.1 mRNA upstream 15973 19219074 ~ 19250436 (-) False LOC120566717
XM_039813327.1 mRNA upstream 15973 19219074 ~ 19227660 (-) False LOC120566717
XM_039813329.1 mRNA upstream 15973 19219074 ~ 19222298 (-) False LOC120566717
TU142417 other downstream 484837 18687788 ~ 18691410 (-) True LOC120566257
TU142254 other downstream 870552 18303269 ~ 18305695 (-) False reep2
TU142092 other downstream 1184376 17987258 ~ 17991871 (-) False sfxn1
TU142030 other downstream 1381024 17783560 ~ 17795223 (-) False LOC120567448
XR_005640507.1 other downstream 1598436 17522141 ~ 17577811 (-) False nexmifb
TU142573 other upstream 12888 19215989 ~ 19219144 (-) False LOC120566717
TU142773 other upstream 276917 19480018 ~ 19482558 (-) False tlr1
TU142874 other upstream 769314 19972415 ~ 19981133 (-) False fgf18a
TU142968 other upstream 1027807 20230908 ~ 20233924 (-) True G106443
TU143328 other upstream 1924737 21127838 ~ 21130970 (-) True G106728

Expression Profile