RNA id: XM_039813822.1


Basic Information

Item Value
RNA id XM_039813822.1
length 5189
RNA type mRNA
GC content 0.55
exon number 28
gene id ccdc88b
representative False

Chromosome Information

Item Value
chromosome id NC_053121.1
NCBI id CM020918.1
chromosome length 40300294
location 22998526 ~ 23039438 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

gagacagcGAGGTGGAGGGAGGGGAAGGGCCGCAGAAACGTCAAACTACTTCACTTGAAGCAAGATGGATTCTAGTACATAGTGTTGATAATCTTTTTTAATTAGCTGTCTTCTGTAGTGTTTCACAGCTCTCGTAACATAACAATGGACTCTAACATTATGGAGACAATAGAGGAATTCATGGAAAGTGCGTTGGTGCAATGGGTTCAGCTGTTTGAAAAGATGGTGGAGAGGGAGGACGGCTTCCCGCTTTACAGCCAGTACATGGAAGTCAACTCAATTTCCCAGAGTGTCCGGGATCGTTACATGAGGCTGACCAATGGGATTTTCCTCAATGAGATCATGAGGGTCATAGACCCGAACCCCAAGGTGGAGCGTTTGTACAACAGCGAGCGAGATGATCACATGCTGAGAGTCCAGAACTTTTCGATATTAACTCGACACATCAGAGCCTTCTACCAGGAAGACCTGCAGCAGTTAATACTGATGCCTCTCCCAAACGTTGCCATTCTGGGGCAGGACCCCCTAACAGAGGCAGCCGTGGAAGAGCTCCGACGACTTCTGCTGCTCTTACTAGGATGTGCTGTGCAGTGTGAGGAGAAGGAGATGTTTATCCAGGAGATCCAGTCTCTGGACATTGAGACCCAGGCAGCCATTGCCAGCTGTATCCAGCAGGTGACTCAGGATCCTCGCACGGTGCTGCCGCTGAGGTGGGAGGAGCTGGTAGAGGTTGAAGGTGCAGACTTACAGCTGGTGTTCAGCTCCATGGCCAAACAGATCCAAAGCCTGCtggcacagagagacacacaccttgagAGGATAGCAGAGCTGTGTCGGGAGCGGGAGAACCAGTCTGACTCAACCACGGTGCCCCTGGGTGGTCACAGCGAGGAGCCACCCCAAAGTCTGGCTCTCCAGCTGGCAGACAGCAAGGCCAAACTCCGCCGCCTTAAACAAcaactGGAAGATAAAGGTGATCAGATATTGGATAACAACCTGGAGATTCAAACCATGGAGGAACAGATCAAGAAACTTCAGAAAGAGAATCGTTCTCTGCAGGGTGAAGTGAGGGGCATGCGTGCACTGCGGGATGAGCTGGACTGCGCCCGAGAGCGAGCTGCGCGGGCTGAGCAGCTCCAGACTGAGCTTCAGAGCTGTAAACACAGATTGCGCAGCCTGGAGCTCACACGGACTCAGCTGAAGgagcagcagcagctgtgtgcAGCGCTGCAGGAGACCAAAGTTCTTCTGGAAGAACAGCTGGCCAATGCACAGGCACGCTGCTCCTCACTAAGAGAGCTTGAGAGGGACAATCTTCTGCTGCGTCAGAGAATCATAGACGTGGAAGCGgagcaGGACACCGAGAGGCAGCGAGTTGATGAGCTGCTGGAGATGAACATGAGCCTCGAGGCGGACCTGAGGCACTGCTGCAGCAGCGGCAGTGTTCCCGCTCCAGTTGCTGCGGTTCACCAACGTTTCCTCCAATCAGAACTGGACTCTGACGAGGAGCTAAACGAAATGATTGATCAGAAGCCACTGAGTGTGGAGGTGGGCGAGGCTTCGACGCTGATGCTGCTGGGAGCGGAGCAGGAGAACGCAGAGCTGAGGAGACGACTTGAGGAGCTGCAGGCCCAGCAGGAGGCTGATTCTCCAGATGCAAAGGATGAGCTGGCTTGCCTGGAAATGGAGCATCAGAACACACTCAGAGAGTTTCAAAACTTGAAGAATGACAATGCCACTTTGAAGCAGCGCCTTGAAGAGCTGGTGACCAAACTGCAACACTTAGAAGACAAAAAGAAGGAAGGAGTGAAGAtgccagacagagaggaggaggagaaggtggAGAGAGGAGTCCAGGGCTCTGAATCCTGCAGGGGAGAAGGGGAAGGAAGGGTGAGGGTAATGGGGTtgagggagagaagaggagaaatcATTGGGACCCAGAGGGAAGCAGGCGTTGGGGAAGAGGTTGTCCATGTTGAAGGGGGAAAAGAAGAACCATGCGATGAGGAGGCTGAGTCcaaaggaagaggagaggcagagggagggcagaaggacaaagagaaaaaggagaaagaaagaaacataaAGAAAGATCATACTGCAGTAACAACAACAAGCTCAGAGATCCAAAACCACTCACAAAGTGTAGAAGATAATACAGAGACCACAGCTGTAGTGCAGGCTGTTTGTCCACTGTCTGTTCCTGATGTAGAGCTTCTGGCAAAGCACCTCCAGGATGCCCAGGAAGAGGCTGACAGACAGGCAATGGTGGCCCAGGACCTGCGCTCCAAACTGGGGGAGCAGAGCAGAAAAACCTGGGAGGCTGAGCAGAGGCTGGTGGTTCTGGAGGCCGAGCTGCAGCGACTGAAGAGAGCTGCCGAGAGTCTGGGAGATGCCCGCAGGCAGATAGAGGTTCTTCAGTCGGAGGGTCTGGTTATGGAGGAGGAGCTGTGCCGCTTGCGGAGCCAAGTGGGGCTTCACAGGATGCAGTCCACAGTCATCGCCACCCTGGAGGGAGAGCGGGCCGCactggagagagacagggataCGCTACGCAGCACCATGGACGCCCTGCGCACCGCCTACCGCAAGAGTGACCAGTTAGAGCTCACCACTCAGACTCTCAGGGCAGAGGTCGAACGACAAGTTCGGAGTTTGGAGACTTCTCGACGTCgggaggaggagctggaggcaGAGCTCCGCGAGGCCACCGTGGAGGCCGAATCTATGGCCCGGGCGCGAGACCAGGCGCTGCTGGAGGTGTCAaggctggagcaggagaaggagGTGTGTCAGTCGGAGCTGGACGGCCAACGGAAGgaggggaggcagagagagagggaggcagcgAGGCTCAGGCAGCAGCTGGAGAGCACAACCCTGGCCCTGGAGCACAGCAACCAGAGAGCTCGGGCTCTGGATGCtgaacacagaCGTGCGGGTCAGCAGCTGTCTGAATCCAAGGAGCTCTGCACTCGGCTGCAAGACCTGGAGAAGGAGCTCAGCACTCGATTAACCAGCATGGAGGAGGGTAAACAGCAGCTGCAGGAGCAGCACGCAGATGCTCAGGCCAAGATTAGCTCACTgtcccagGATCTATCCAATGAGCAGGCACGTTCTCAGAAACTGTCTACTGAAGTCGAACATCTGAGCCAGAAACTGCAAAACGCTGAAGCTGAACTTAAGACAACAACCGATTATCTCAACCAATCACAGGAGAGAATAGAGTCGCTCTCCAAGTGCCTTCAGAAAAGTGAATCTCTTCTCCATTTggaaaagagaagaggaagtGCGGAGGTGGACGCTACGTCTAATTCAAAATCAGATTcatcaaacaaaaatcatatTTGTCACACAAACACCCAGGAGACGTCACATCTGGATCAATCCCTTGCAGCTGGCAAAGGTCGACACCTTTCCATGACGCATGACTATGCcacaggagagacagagaggcagctGAGTGAGAGGTTGATAGAGCTGGAAAGAGagaaaGCAGTGGCGGTTGCAGGACAGGAGGCTTTGCTGTTGCGACTGTCTCAGTCCCAGGAGGCGTGTGAGCACCTGAAGGAGCAGCTGGAGGGTCTGCGCCGGCACTCCCTCAGCCTGCAGGACTCCTGCACCAGAGTACAGACACTCAACACCCAGCTACAGgtggagcAAGCATCTCTTAGCTCCCAGCATGCAGCAGTTGTGGCGCGTTGCAGTGAGAGTGAGGGCCGGTGTGTGGCTCTGGAGGCCGAGTCCAAAGTGTGGGCGCGGGAGCGGGAGGAGTCGGTGGCCAGGATGGAGGCTCTGAGGCGGGACCACGAGCGGATGACTGCTCTGCAGCAGCGGCAGGAGGTGGAGCTGGAGGAGCTGCTGGACAAACACTCTCAGCTGAGGAGCAACAACCGCAGCCTGGAGGCCCAGCACAGGGAGCTCGAGGCCAGGTACAAGGAGCTACTGGACGATAAAACCCACCTGGAGGAGAGAGAGCGGGAGatgaagatggagagagaggagatggaAGCAGATGCCCAGAGGAGACTGGAGAGAGAACGAGAGCTGGAGAGGCTGAAAGAAGACAACGATAGgCTGCAGGCCCAGCAGAAGGAGGGGTTGGCGTCACAGGCAGAGCTGCTGGCTCAGGGCTCGGAGCTGAGGGGCGAGCTGAGCGCCTCCCAGCTGGAGCGGACACGGCTGGAGGGGGAACTCAGCGGCCTGAGGGAAACCAACCAGAGCCTGGTCCTCACCAGCGCCCGCCTCACCAGCCAGTACCAGcTGTTAACCCAGTTGAAGGGGAACATGGAGGAGGAGAACCGACATTTAGCGGAGCAGAACCAGAGTCTGCTGAAGGAGAATCGGGCCTTACTGGAGCAGAGCCTAGAGCGCCGTGACCAGCACTACTCACAGCAGAGGGAGTACCAggAGAAGCTGAGTGAGCTTCGTCGGGAGAAGCAGAAATTGGTGGAGAAGATTATGGATCAGTATCGAGTCCTCGAGCCCAGCATGCAACCTCCAGCCAGCAAAGCCAAGAAATCTAACTGGATTGCAGACCGGATGAAGAAGCTAATCAAACCCCGGGGAGGAGTAAGAGAGGGACGAGCCCTCTTCACCGCCGCGGGCAGTGTGGAAAACATAGCCGACAGCACTGAATTTACAtcagacacgcacacacctcATCCCGACCCCCGCAGTGCTccagtctctccctctccaaTGAGAAAAGCTCCATCCCAGACAGACATCTCGGCTCCTGGGACTCCAGCCATGCGCTCCAGCTCTGGGGTGCGTCGTAAGCTGGGATCCCGTCACGGCTGGGGGCTTGGGTTGGCCAGAGGAGGCTCTGGAGTCTCCCAATCCTTCAGTCCTGGTGACCACAAAACACCACCCCGCTTGCGGCTGCGCTCCAGCCAGAACAACTCCACTGTCCTCtgggagggacagagaggcgAAACAAACACACCCCAGACAGCAGACGCTCCGTTGAGCAGTCAGGAGAGTGTCGAGGAGGATGAAGGCAGAGACAATCAACACTCCAGTGACGACACAGCAACAACCTGAGACAGAACTACACTTGACTCTTAATTAAAGCTTATGTTTAATATTTTTGATGCAACCTTTTGTATTCctgaatatttttaaaatgagatccttttagtatttttgaatacatgaattaataaatcattttgttAATCGTT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU144034 lncRNA upstream 1488 22950595 ~ 22997038 (+) False rom1b
TU144039 lncRNA upstream 39946 22958158 ~ 22958580 (+) True G107203
TU144017 lncRNA upstream 41627 22919853 ~ 22956899 (+) False G107185
TU144024 lncRNA upstream 66364 22929269 ~ 22932162 (+) True G107191
TU144020 lncRNA upstream 71790 22925809 ~ 22926736 (+) True G107187
TU144112 lncRNA downstream 60603 23100041 ~ 23127134 (+) False flrt1b
TU144140 lncRNA downstream 197813 23237251 ~ 23237450 (+) True G107276
TU144215 lncRNA downstream 231361 23270799 ~ 23271221 (+) True G107334
TU144222 lncRNA downstream 243541 23282979 ~ 23285214 (+) True G107341
TU144221 lncRNA downstream 245925 23285363 ~ 23287678 (+) True G107340
XM_039814411.1 mRNA upstream 1538 22990964 ~ 22996988 (+) True rom1b
XM_039813065.1 mRNA upstream 10971 22979319 ~ 22987555 (+) True LOC120566541
XM_039813612.1 mRNA upstream 48995 22942462 ~ 22949531 (+) True LOC120566913
XM_039813606.1 mRNA upstream 88964 22903755 ~ 22909562 (+) True ubxn1
XM_039813836.1 mRNA upstream 119055 22877797 ~ 22879471 (+) True map1lc3cl
XM_039812863.1 mRNA downstream 60587 23100025 ~ 23132685 (+) False flrt1b
XM_039812861.1 mRNA downstream 66768 23106206 ~ 23132685 (+) True flrt1b
XM_039812890.1 mRNA downstream 118931 23158369 ~ 23173854 (+) True fermt3b
XM_039812875.1 mRNA downstream 137400 23176838 ~ 23182934 (+) True zbtb3
XM_039812874.1 mRNA downstream 137401 23176839 ~ 23182934 (+) False zbtb3
TU143997 other upstream 24765 22954972 ~ 22973761 (+) True G107168
TU143990 other upstream 132850 22862190 ~ 22865676 (+) True G107163
XR_005640584.1 other upstream 1537076 21448804 ~ 21461450 (+) False stx3a
TU143018 other upstream 2646359 20351721 ~ 20352167 (+) True G106465
XR_005640374.1 other upstream 2937188 20043031 ~ 20061338 (+) False LOC120566323
TU144145 other downstream 218833 23258271 ~ 23262229 (+) False tgfb5
TU144214 other downstream 229353 23268791 ~ 23270216 (+) True G107333
TU144280 other downstream 415129 23454567 ~ 23466184 (+) False ubl3b
TU144289 other downstream 448863 23488301 ~ 23491358 (+) False LOC120566905
TU144290 other downstream 448863 23488301 ~ 23491358 (+) False LOC120566905

Expression Profile