RNA id: XM_039813829.1


Basic Information

Item Value
RNA id XM_039813829.1
length 2066
RNA type mRNA
GC content 0.51
exon number 16
gene id LOC120567040
representative True

Chromosome Information

Item Value
chromosome id NC_053121.1
NCBI id CM020918.1
chromosome length 40300294
location 5920351 ~ 5946550 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GGGGCGGAGCGGTTCTCCCTACCGGGCGGTGTCAGCTGGAGAAAACGGGAcggaggagcagtgagaggccGACACAGGAGGGACTCATTTCCCCGGCTGATTGTTCTCACTGCACCAGCGGACTCCAGGTGTCAGCATGTCGACAAACATAAGCGCCGAGGAGATGGCGGAGATGAGGGAGGCTTTCCAGAAAGTGGATTCGGACGGCAATGGGTACATCGTCTCCTCTGAACTCGGCGATCTCTTCCGCGAGGCGGGCTGTCCTTTGCCCGGATACCAGATCAGAGAACTGCTTCAGAAGCTGGACAGAGACAACGACAGCCAGATCAACTTTGATGAGTTCACGGCTattttcaAGGATATGAAGGACGACCGCATGGCCCAGGGTTTCAAGAAAGCTCTGAACAAGAAACAAGGCATCGTGGCCATCGGGGGCACCAGCGAGATCTCTAGTGCAGGAACTCAGCATTCCATCTCTGAACAGGAGCGCTATGCCTTCGCCAACTACATCAACTCTACTTTGGAAAAGGATCCAGACTGTAAGCACCTGCTGCCCATCAACCCCGAAACTGAAGCTCTGTTTAAAGCAGTGGCTGACGGCGTCATCCTTTGTAAACTCATCAACCTCTCTGTCGCTGACACCATCGATGAGAGAACCATTAATAAAAAGAAACTGACAGCTTTCACCACACAGGAGAATCTGAACTTGGCTCTGAATTCCGCCTCGGCCATCGGCTGCCAAGTTGTCAACATCGGAGCTCAAGATCTGAAGGAGGGAAAACCTCACCTGGTGCTCGGACTCCTCTGGCAGATTATCAAGATAGGACTGTTCGCTGCTATAGAGCTGAGCCGCAATGAAGCTATAGCAGCGCTGCTGGAGGAAGGGGAGAGTCTGGAAGAACTGATGAAACTCAGTCCTgaggagctgctgctgcgctgggCCAATTTCCATTTAAAGAAAGCCGGCATGTCCATATCAAACTTTTCTGGAGATATTAAGGACTCCAAGGCGTACTTCCACCTGCTAGAACAGATTGCTCCAGATGGCAGCAAAGAGGACGTTCCCCGGATTGAGATCGACATGACTGGTCTTTATGAGAAGGATCTCACGAAGAGAGCGGAGTGTATGCTCAAACAGGCCGAGCGCCTCGGCTGCAGACAGTTTGTAACTGCCACCGACGTCGTGTCTGGAAACTCAAAGCTCAACATGGCCTTCGTAGCCAAGCTCTTCAACAAATACCCGGCTCTCACCAAACCAGACAACCAAGACTGGAATAATGTGGAGAGCGAGACCAGAGAGGAGAGAACTTTCAGGAACTGGATGAACTCTCTCGGAGTCAGTCCACACGTTCACCATATCTACGGTGATCTGCAGGATGCCATGGTGATTCTCCAGCTCTATAAAACGATTAAGGTGCCAGTGGACTGGGACAAAGTCAACCAACCTCCATTCAAGGGAAAAGGAGCAGGGCATTTAAAAAagatggAAAACTGTACCTATGCTGTGGAGCTGGGTAAGAAGAAAGCTGGTTTCTCCCTGGTGGGAATTGGCGGACAGGACCTCTACGATGGAAATCCAACTCTAACTCTGGCACTGGTGTGGCAGCTGATGAGGAGGTACACATTAAATGTTCTTGAAGACCTCGGGCACGGAGCAGTTGCAGGAGATGATTTGATAGTTTCATGGGTCAACAAGACTTTGGCTGAGGCTGGCAAGAGTTCCTCTATCAAAAGCTTTAAGGACAAAGCAATCGGTACCAGTATGCCGGTTCTGGACCTGATTGATGCCATTCAGCCACAAAGTGTGAACTTTGAGCTGGTTCAAAAAGGAAGTCTGTCAGACGAAGACAAACTAAACAATGCCAAGTATGCCATTTCCATGGCGAGGAAGATCGGGGCGAAAGTCTACGCTCTGCCTGAGGACCTGGTAGAGATTAACCCGAAAATGGTGATGACCATCTTCGCCTGCTTGATGGGGAGAGGGATGAAGAGGGCTTAAAGGACAGACCAACATACTGACTGTCTTCGCCCGTGTGATTTAATGAGACATAAAGAGAGTTAACATA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU139366 lncRNA downstream 25193 5894819 ~ 5895158 (-) True G103621
TU139363 lncRNA downstream 32267 5887551 ~ 5888084 (-) True G103618
TU139356 lncRNA downstream 54891 5864980 ~ 5865460 (-) True G103612
TU139240 lncRNA downstream 398963 5517147 ~ 5521388 (-) True G103519
TU139233 lncRNA downstream 430494 5489629 ~ 5489857 (-) True G103513
TU139404 lncRNA upstream 53539 6000089 ~ 6001998 (-) True G103657
TU139409 lncRNA upstream 64218 6010768 ~ 6021714 (-) True G103661
TU139460 lncRNA upstream 142512 6089062 ~ 6109745 (-) True G103694
TU139481 lncRNA upstream 198996 6145546 ~ 6169247 (-) True G103712
TU139508 lncRNA upstream 312161 6258711 ~ 6259004 (-) True G103731
XM_039813828.1 mRNA downstream 5614 5909740 ~ 5914737 (-) True LOC120567039
XM_039813826.1 mRNA downstream 19055 5897142 ~ 5901296 (-) True LOC120567038
XM_039814181.1 mRNA downstream 66805 5851783 ~ 5853546 (-) True LOC120567274
XM_039812633.1 mRNA downstream 173713 5732226 ~ 5746638 (-) True LOC120566289
XM_039813840.1 mRNA downstream 189116 5703901 ~ 5731235 (-) True snx25
XM_039813217.1 mRNA upstream 9514 5956064 ~ 5974484 (-) False ptcd3
XM_039813216.1 mRNA upstream 9514 5956064 ~ 5974484 (-) True ptcd3
XM_039814366.1 mRNA upstream 1164698 7111248 ~ 7112332 (-) True LOC120567409
XM_039814351.1 mRNA upstream 1166145 7112695 ~ 7113960 (-) True LOC120567393
XM_039813713.1 mRNA upstream 2041781 7988331 ~ 7995944 (-) True slitrk4
TU139134 other downstream 1334267 4575782 ~ 4586084 (-) True G103434
XR_005640409.1 other downstream 1344675 4554230 ~ 4575676 (-) True myot
TU139115 other downstream 1479468 4426768 ~ 4440883 (-) False fmr1
TU139116 other downstream 1480606 4426768 ~ 4439745 (-) False fmr1
TU139113 other downstream 1520361 4320709 ~ 4399990 (-) False LOC120567378
TU139551 other upstream 810256 6756806 ~ 6759568 (-) False LOC120566343
unassigned_transcript_455 other upstream 1175503 7122053 ~ 7122125 (-) True trnam-cau_10
unassigned_transcript_456 other upstream 1177053 7123603 ~ 7123675 (-) True trnam-cau_11
unassigned_transcript_457 other upstream 1186282 7132832 ~ 7132904 (-) True trnam-cau_12
unassigned_transcript_458 other upstream 1187827 7134377 ~ 7134449 (-) True trnam-cau_13

Expression Profile