RNA id: XM_039813848.1


Basic Information

Item Value
RNA id XM_039813848.1
length 3685
RNA type mRNA
GC content 0.45
exon number 24
gene id LOC120567058
representative False

Chromosome Information

Item Value
chromosome id NC_053121.1
NCBI id CM020918.1
chromosome length 40300294
location 27851687 ~ 27865367 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

AAGATAAATGTATTGCCACCACACCCTTATTGTATGTGTCTACAGTGAGCCAGTTAGCAACTGCTAGGGGCTATCTCTTTTCTACGTGGGTTTACAAGGACTCTGTGCTCTTTTAGAGAGCATGGGCACTGCATGAGATAGGGCAGGTAGAGTACACATTTTAATCAAAAGCATGGCAAATCACTGGCACATAGTGTATCTGTTGGGTTTCTGGCACCTCCAGACTCTAAATGTTGCAGCTTTCAATCTGGACACCCAGAGTGTGCTGCAGAGAAATGGAGATCCAGGAAGCCTGTTTGGATTTTCTGTTGCCTTTCACCAGCAGCTGAACCCAGCCAGAAAGAACATatTGCTTGTCGGAGCACCACGGTCAAAACACCACAACCAAGTGAATGTTACAGGTGTTGTTTACCAGTGTGATCTGACTACAGCATCTGACCACTGTCGGCCCATTGAGTTTGATAACGAAGagttCCTTGATAGTAAAGGCATAAACAACCAGTGGATGGGAGTTAGAGTGACGAGCCAAGGTCCTGGTAAAAATGTAATGACCTGTGCCCATCGATACCAGGAGTGGAGCCCGAGTCCGAGCCTTTATGTCCCTCAGTTGGTAACGGGTCAGTGTTACCTCTTAGGAGATGACCTGCAGGTCGGGAAGGAAGAGGGGATGTGGAGGAGGGTAGTTTGTGACTCTGAGCACCTGACCAGACGTCAAAAGAACCATGACTGGTTTGCATACTGCCAACAGGGTCATGGAGCATCTTTTGCAAAGGACAACACATCTCTGATATTCGGAGCGCCAGGAGCATACCAGTGGAAAGGAATCGTACGAATGGAGCGCTTGGACAACCAGGGCATCATCGGTGCCGATGCTCGTGAGACTGGAGATATTGAAAAGTTTAACTCAACACTCATTCCTCTCCAAAGTAACAGCTACTTGGGATTCTCCACTGACTCTGGTATGGCCCTCATCAGACAGGGTGAGCTAACCATCGTATCAGGAGCGCCCAGAGGAGGTTACAGCGGCCAGGTGACATTTCTTAAGGCAGACCCTGTGGCAAAGAAAAGTTTGTCTGTGGAGTTAGTCCTCTCCGGTCCGGGCCTGGCCTCCTCCTTTGGCTACGATGTAGCAGTGGTGGATCTCAATGGTGATGGGTGGGAGGACCTCGCTGTTGGAGCACCGGAGTTTTTTGTTAAAGATGGTTTGGTTGGAGGAGCAGTCTACATTTATATCAACAGTAAAGGAAAAAACTGGGAGAAGATTGTTCCAACTGAAGTTCTTGGACCTAAAGATTCCATGTTCGGCCTCGCAGTGGAAAACATAGGAGACATCAATCAAGATAGTTATGGAGATATTGCCGTGGGGGCACCATATGATGGTTCAGGTCGAGTATACCTTTATTACGGCTCATCAGATGGAATCAACAAAAAGCCAGCGCAGGTACTCTCATCGGGATCCAATAAAGTTACTCTGTTTGGATATTCTCTGTCTGGCAACTTGGACGTGGATAACAATCAGTACCCTGATCTGGCTGTTGGATCTCTGTCTGATTCCGTCTTTGTTTACAGAGCAAGACCAGTGGTCACTGTCAGCAGCTCTCTGAAGGTAACACCAGCTGATATAGACATCACAAATGAACAATGTGATAAACGCACATGTAACTTTGCAGCTCTGGCATGCTTTACCTACACAGCACATCCAGCATCGTTCAACCCTAAACTGATGATTGACTTCACTTTTGAGGCTGATGCTGAGAGGAGAAAAGCGAGGCTTCCTCCTAGAGTGGTTTTTCAGGGTTCTTCTCGAGGAAGGCTGGAGCTGCCTGGACAGAATAGACAAATCTGTACTGGCACCCAGCTCCAACTTCTGCATGATATCAAGGACAGGCTGCACAGTATTCCTGTCTCCGTCACTATGTCTTTGTGGAACTCCAGTCAAACAACCAGGACGAGTGCAGATCTGCCCATTCTTACTCCTGTCCTCAACCTCTTCCAGCAAAAGAGCACCGACTCAGCGATTATCTTAATAAACAAGGGCTGTGGCAGGGACAACGTTTGCCAAAGTAACCTAGAGTTACAGTACAAGTTCTGCTCGAGAAAAATGCTAAATAATCAAGATGTTTTCGAATCACTCGCCAGAGAGGATGGTGGTGCAGTCATCAATCCTTCTGATGAAGCTATAGCTTTAGAGATCactgtgactaacagaaatgggGATGACGCACACCAGAGTCGTTCAGTCATCAGCCTCCCAGATACTCTTCATTACTCTTCTATTGTCTGCAGTAAAGCATCGGAAACACAAGTGAGTTGTACAGCCAATGATAAAGGCACACTTATAAACTGTGAACTGGGGAATCCACTCCAAAGAGATGCTGAAGTTACTTTTTATGTCATACTCTTAACATCCGGCATATCACTGAGTACAACAGACGTCAACGTCACCCTGCAACTTGAAACGACAAGTACACAGACCATACAACCGGTTGAGGCTTTAGCAAAAGTGATTTTTGAACTGGAGCTGCAAGTAGATGGACTAGCCAGGCCCTCTCAGGTGTCACTTGGCGAAAACTTGAGGGGTGAGAGCGCCATAAAATCAGTGAATGAAAGTGGAACTCCGGTTCAATATGAATTTAGGATAACAAATTTGGGCAGACCACTGAAATCTTTCGCCAATGCATCACTAAACATCAACTGGCCAAAGGAGAACTCTGTAGGAAAATGGCTTCTGTACTTGACTCAGATCAGTAGTAAAGGTGTACAGTCGGTCCACTGCTCACCTGTGAACGAGGTCAATCCACTTAAGCATGCTAAGGGTTGGCGTGACCCCTCGAGGAAAAGACGCGAAGCTGAACACAAGGCTCTCTTTACTGATGGATTCCCATTTCTTCCAAAGAGAAGGAAATACAAAACCtttACCTGTTCAGATGGACTGAAGTGTGTTCAGATATGCTGCCCTCTGCTGGGATTGGACAGTACTGCAGTAATGGTTCTTAACGCGCACCTCTGGAACACCACTTTGACAGAGGTAAAACTGACAGTGTTCCTCGAGAGGAAGGCTGAATATTTCACCAAAGTAGCCTGGTGGATAATCTTCCTGACGGTCATTGCATTGCTCCTGTTGTTGGCAGTTCTTGGCTTCTTGTTGTGGAAGCGGGGATGCATCAACTGCCTCGCTCAGAACAAGAATCCCTCCCATGATGGAGATCCAAACACAGAGACTGCTCCCCTTAAAGGCTAAAATGAAACCAGAGACCCTAGCGGTATGAGACACGTGCCGTGAACACAAGATGTTAACCGTATGATTCTGGCTCAAATATACTAGTGCAGAATTACATGATAATACATGATTTGTTGGGACATCTTTGATGCAGagccttttttgtatttttggtgCATGTTTCTGCTacgttatataaaaaaaaaaaaaaaccacaaataatattttgagttttttttaatgaagcagaaaataTCACTTGTTTAATACCAAAAAACTGTTACAACATGAAAAAAGTTGTGCTATACTTTGACCATGACGGAATGTGCGAGTGGTGGGGATGGATGAGGGGGTTGTACTACAGAACAATTTACCTGAAATAGAATTGAAATATTGCAGCCACCACATCCTAATGTGACTGCTGATCATTAAAAAGCACATATGATTACAATGTTGTCTTTGAAA

Function

GO:

id name namespace
GO:0007229 integrin-mediated signaling pathway biological_process
GO:0007155 cell adhesion biological_process
GO:0008305 integrin complex cellular_component

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU145629 lncRNA downstream 12580 27837568 ~ 27839107 (-) True LOC120567057
XR_005640513.1 lncRNA downstream 12766 27838338 ~ 27838921 (-) False LOC120567057
TU145614 lncRNA downstream 64904 27786110 ~ 27786783 (-) False aurkb
TU145588 lncRNA downstream 78706 27772676 ~ 27772981 (-) True G108353
TU145587 lncRNA downstream 79616 27771851 ~ 27772071 (-) True G108352
TU145664 lncRNA upstream 88112 27953479 ~ 27954107 (-) False LOC120566991
XR_005640501.1 lncRNA upstream 102697 27968064 ~ 27970362 (-) True LOC120566995
TU145677 lncRNA upstream 115683 27981050 ~ 27981447 (-) True G108422
TU145679 lncRNA upstream 116591 27981958 ~ 27982329 (-) True G108424
XR_005640500.1 lncRNA upstream 138167 28003534 ~ 28004849 (-) False LOC120566994
XM_039813069.1 mRNA downstream 15458 27815285 ~ 27836229 (-) True LOC120566545
XM_039813205.1 mRNA downstream 37498 27803358 ~ 27814189 (-) True mcm7
XM_039813204.1 mRNA downstream 49351 27799826 ~ 27802336 (-) True LOC120566642
XM_039813202.1 mRNA downstream 61476 27780132 ~ 27790211 (-) False aurkb
XM_039813751.1 mRNA upstream 43553 27908920 ~ 27910963 (-) True LOC120566982
XM_039813755.1 mRNA upstream 49711 27915078 ~ 27917448 (-) True LOC120566987
XM_039813757.1 mRNA upstream 60057 27925424 ~ 27927535 (-) True LOC120566989
XM_039813756.1 mRNA upstream 68927 27934294 ~ 27936535 (-) True LOC120566988
XM_039813758.1 mRNA upstream 74690 27940057 ~ 27942346 (-) True LOC120566990
TU145627 other downstream 12580 27837848 ~ 27839107 (-) False LOC120567057
TU145628 other downstream 12580 27837848 ~ 27839107 (-) False LOC120567057
unassigned_transcript_477 other downstream 72473 27779133 ~ 27779214 (-) True trnal-aag_2
TU145467 other downstream 589567 27258247 ~ 27262120 (-) False LOC120567151
TU145368 other downstream 785740 27065418 ~ 27065947 (-) True G108191
TU145691 other upstream 156370 28021737 ~ 28023229 (-) True G108433
TU146164 other upstream 2795545 30660912 ~ 30661623 (-) True G108777
TU146169 other upstream 2804164 30669531 ~ 30670849 (-) True G108781
XR_005640397.1 other upstream 3522340 31387707 ~ 31423481 (-) False LOC120566409
TU146377 other upstream 3565653 31431020 ~ 31485976 (-) True LOC120566557

Expression Profile