RNA id: XM_039813891.1


Basic Information

Item Value
RNA id XM_039813891.1
length 1237
RNA type mRNA
GC content 0.53
exon number 6
gene id LOC120567087
representative True

Chromosome Information

Item Value
chromosome id NC_053121.1
NCBI id CM020918.1
chromosome length 40300294
location 458620 ~ 460571 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

AGTTGCAGCACACAGGGCCAAAATAACTACATCTCTACTACTACTAGGGATTAAGGTGTATAGGTGAAAATGGTGCATTCATTATTCTGGCTCCTGCCTCTTTTATACAAAATGTGTCCGGGACATGCTTGGGTGGCAGGTAACTTTCTTATGACGGGACCCAAGGCCTATCTCACCTATGCAAGAAGCGTGCAGAGGGGCGCGCAGGCTGGGATTGAGGAGTGCAAACACCAGTTTGCTTGGGACAGATGGAACTGTCCCGACAGTGCAACTCAGCTCAAAGGACTAAAACGCGCCACCAGAGAGACTTCTTTCATCCACGCTATGAGTGCAGCGGGGGTCATGTACACTCTGACCAGGAACTGTAGTCTGGGAGACCTCGACAACTGCGGCTGTGATGTCTCCAAAAACGGAAAAATTGGCGGCCGTGGCTGGCTGTGGGGTGGCTGTAGTGATAACGTGGATTTCGGAGAGAGGATTTCCAAACAGTACGTGGATGCGCAAGAGACTGGTCAGGACTCCAGGGCTGCTGTCAACCTGCACAACAACGAGGCAGGGCGGCTGGCCGTAAAGGCAACAATGAAGCGCATCTGTAGATGCCATGGCATGTCTGAGAGCTGCAGTGTCCAAACCTGCTGGACACAGCTGTCAGATTTCAGAGAAATCGGCAACTACTTGAAGATCAAGCACGGTCAAGCTCAAAAACTGGACATCGACAAAAAGCGCATGCGGGCTGGCAACAGCGCGGACAACCGAGGTGCCATCGTGGACGCGTTTGGCAGCGTCGCCCAGAcagagctcatctacctggagGACTCCCCGGACTACTGCAGGAAGAACAGCAGCTCGGGACTGCACGGCACCGAGGGCCGGGAGTGCGTGCAGCACGGAGAGGGTTTAACTCAGTGGGAGAGGCGTAGCTGCCGCAGGTTGTGTCATGAATGCGGGCTGAGGGTGGAAGAGAGGCGCACGGAGGTGGTGAGCAGCTGCAACTGCAAATTCCACTGGTGCTGCACGGTGAACTGTGCAGACTGCTCTCAGGTTGTAGTCAAACACGTGTGCGCCGGGAGGGAAGGTGCCGACGGCCACGGTGTTAGACGGAAATACCGTGAACCCAAGTGAGAAAAAATAGTATATGGATCTGTTACCATAGGCTACATCACTGTAAAGTCTGTTGAATAATGGTCCATATCAAGATGTTAAATGTCTGTTTGCACTTTTCATGTCTCCTTTAAAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU137748 lncRNA downstream 70375 383449 ~ 388245 (-) True G102309
XR_005640572.1 lncRNA downstream 227164 230377 ~ 231456 (-) True LOC120567446
XR_005640573.1 lncRNA downstream 229181 227228 ~ 229439 (-) True LOC120567447
TU137700 lncRNA downstream 248178 210129 ~ 210442 (-) True G102273
TU137656 lncRNA downstream 391607 65635 ~ 67013 (-) False G102240
TU137794 lncRNA upstream 5844 466415 ~ 468450 (-) False tmsb2
TU137796 lncRNA upstream 27727 488298 ~ 488647 (-) True G102341
TU137798 lncRNA upstream 39897 500468 ~ 500682 (-) True G102343
TU137800 lncRNA upstream 98160 558731 ~ 559029 (-) True G102345
TU137801 lncRNA upstream 99290 559861 ~ 560236 (-) True G102346
XM_039812560.1 mRNA downstream 2401 452088 ~ 456219 (-) False lcp2b
XM_039812561.1 mRNA downstream 2576 452088 ~ 456044 (-) True lcp2b
XM_039812562.1 mRNA downstream 10661 445633 ~ 447959 (-) True foxi3b
XM_039813817.1 mRNA downstream 28765 423933 ~ 429855 (-) True LOC120567031
XM_039812958.1 mRNA downstream 125353 311932 ~ 333267 (-) True sh3tc2
XM_039813915.1 mRNA upstream 352 460923 ~ 463027 (-) True LOC120567100
XM_039812667.1 mRNA upstream 5719 466290 ~ 468426 (-) True tmsb2
XM_039813825.1 mRNA upstream 292951 753522 ~ 778323 (-) True lonrf1
XM_039814478.1 mRNA upstream 319066 779637 ~ 781792 (-) False med7
XM_039814479.1 mRNA upstream 319066 779637 ~ 781631 (-) True med7
TU137703 other downstream 227176 220592 ~ 231444 (-) True G102276
TU137926 other upstream 378390 838961 ~ 841546 (-) False insb
XR_005640447.1 other upstream 1720472 2181043 ~ 2197917 (-) True sh2d1aa
XR_005640435.1 other upstream 2431848 2892419 ~ 2898545 (-) False pabir2
XR_005640589.1 other upstream 2435600 2896171 ~ 2896313 (-) True LOC120567496
TU138946 other upstream 3442420 3902991 ~ 3925309 (-) True G103268

Expression Profile