RNA id: XM_039813905.1


Basic Information

Item Value
RNA id XM_039813905.1
length 5992
RNA type mRNA
GC content 0.49
exon number 30
gene id bod1l1
representative False

Chromosome Information

Item Value
chromosome id NC_053121.1
NCBI id CM020918.1
chromosome length 40300294
location 27756523 ~ 27770255 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TCAAACCTGCTTCGAACTTCACAAACCACAACAGAAGCCTGGTGCGTTCAAAGTCGGATATTACCAGATGTGTTGTCAGTATTAACTCATCTTAATTAACCGAATCCAAGCTAACGCCAACTGCATTCAGACATGGCTGGTTTACCACCCGGAGATCCACAGCTGGTCTCAATGATCGTCAACCATTTAAAAACCCAGGGTCTGTTCGACCAGTTCAGGAGGGACTGCCTGGCAGACGTCGATACAAAGCCAGCTTACTTGAACCTGAAACAAAGAGTTGACAACTTTGTCTCAAATCACCTTTCTAACCACACATGGAGCCCTCATTTGAACAAGAATCAGCTGAGAAACAACATCCGACAACTTGTGCTGCAGTCCGGAATGCTGGAGCAGGGAGTGGACAGGATAGTGGCCCAGGTGGTGGATCCCAAAATCAACCATATCTTCAGGCCGCAGGTGGAGAGGGTGGTCCGTGAATTTCTGTCACCTGGAAGCTGCTCAGGGGAGCCACCGGCGCCACTGCCTTCAACAGAGACCAAACCAGACAGCAGCATTCCTGAGCAAGCCTCGTCGTCTGCTCCAGCTACCACTGCAGCCAGCGATGCCATGTCCATCTTGGACACTATAACCTCTCTCAACCAGGAGGCCAGCGTCAGGGCCAGCTCAGACAAAGGACGTAGAGGCCCAGATGAGCCCATGCAGCTGGTGGAGGACGGCGAGCCAGCCATGACTGTTGTTGAGGAAGGAGACAGCCATCATGATGGGAGGACACTGGAAGAGGCAGAGGAGTTGGCATCGGAGGTCCAGGCGTTAGAAGTGAAGACAGAGGATACTCAGGAACAGATGGATCTGGGAAAAGAGGGATTAATAGAGGAGGTgaagatggaggaagaggagtcaGGAGCTCAGGAGCAGACCggggaggagagagataaaGCGGCCAGCAAAACAACTGGAAAACCCACAGAGGAGAAGCAGGATGATGATCTGCTCAAATCTACAAGTCAGGCCAAGCAGAAAGCCAGAGAGAGGATAAAGGAAGAATACTTTTTGGAGGACTCTGACTTGGAGGGCCTGAGTGACATCACAGTGAGCTCGGTCCACACCAGCGACCTGTCGTCATTCGAGGAACAGAGTGACGAAGACGAGCTGCTGTCTGACTCTTCTGAAGAGGGGGAGCTTCCATCagatgATGAGAGAGCAGAAAAGAAACAAGCCAGCGGAgatgcagaagaagaagaagaagaagagcgtAAACCTCGCCGCAAAGCCTACGTGCACAAGCCCTTCCTCTACTCCCGTTACTATAGCGACTCGGATGATGAAATCACTGTGGAAGAACGTCGGAGATCTGTGGCTAAGGACAAAGAGGAAAGGCTGCTCAAGAGACAACAGAACAGAGAGCGAATGGAAGAGAAGCGTAAACAGAAAGCAGCTGAAGAAGATCACAAAAAACAGAAGAGCGGAGACTCTGCTGGGCTGGACGGCCCCAGAGCCAAAGAGGCTCGCAAAGAAAGGAAAGTTCTGGAGAAGAAAATGGCTCTCAACAGGAAGAGGAAGCTCGACTCAAGGAAAGAGGGAGATGTTTCAAGCAAAAAGAGAGGAGATCCAGAAGTTTCCAAGAAAACGGAAGGGAAATCTACAGCCTCAAAGCCTCCACAACCGAAATTAATAAGAAATCTGTCAGAATCAGCATCGTCCGATGAGAGGCACAGAAGGATGAGCGGCAGCGTCTCCGAAGACTCCAGTGAAACCAAGAAGCTGTCCGACAAAGGCCGGACACACTCCTTCATCCTGGAGTTGGAGCAAGGTTCCCAAGAGGCTCTCAAACAACGCTCCGTTGGCAAATTTGATAGGTTTTCCCGTAAGGAACTTCACTCTAAAGAACGCAAAGAGAAAGAATGCAGCTTATCAGATGAACGCGCCAAACTCAAACAAAAGCAGGAGAGAAAATCAGAACATCCGGCAGATGAATCTCAGCAGAAGGAAGGTGCTGCTGTTAAAGTGTCCCCTGAAGAGAAAGGTGAGAGGAAGCCTAAGATTAAAAGTGAGAAGAAAATGTCCGGAACCACAAGAGAAGGAAAGTCGTCAGAAGGCGTGGCAGACGAGGGTCCTAAAGATGCTACTGTGAAGAAGGCAAAAGCTCCATCTGTGGAGACTGTCAAAGCAGAGAAGGACAAAAATAGGGAAAAGGAGAAAGATAAGatcaaagaaaaggaaaaggccAAAGGAGAGAGAACTTCAGCTAAAAGTGATTTCAAGCAGCTGCTCCGCCCAGATTCTGCCGGCTCTTCGGAGGATCGGTCAGACATGGAGCCCGGGTCCGATAGCAGCAAGAAGAAAGATAAACACTCTAAGGAAGTCCTGAAAAGGTCAAAGAGCCACACTGAGGACAGGCCAGGAGACAAACTCAAATCTAAAACTGATAGTAAAGACGGCGAGAAGGAAAAGACTAAAGCAGATCAAGACAGTCAGAAATCAAACAAGTCCAGCTCTGAAATGGACAAAGATCCAAAAAGGGTCAAGCCAACCGAAAAAGGAAGAATCATGGAAAAATCAAAGTCAAAATCCAAAGAGGAAACAAAGACTCTATTGTTGTCAAAGACGGACAATAAAGTTCAGAGTTTAGAAGTCAAAAGTACAGGAGGTGCAGCCATTGGCAAACCTGAGGCGacaaaggagaagaaaaaagaggGAAATGCAAAGGAACAGCGGAAAGTCTCAGAAGAACCTCTCCATGAGAAATCCGAAAGTAAgagtgcaaagaaaaaaacggagaagaaggaTAAAGTCCCAGAAAAGAAGGATGATGGCCAAGAGGAGAAGAAAACCCCCAGAGAAGACAAACTGGAGAAGTCTGATAAATCTTCAAAGTCTTCAGTTTCCTCGCTGGACGCAGAGGAGCAGCCGAAGAAACCTTCTCTCCTCCAAGACACGAGCACAGACTCCGATCCCGTCACCACCACCGTCCCCACCTCGTTCTCAGACGATACTTGCGACGCGTTAAGCGACATCACCCCTGAGCCACCTGAAGGGGAGACGGAGTCACGACTGAGCGAGATGCCGGCTGTGCCGGCCGAGGCCGACGCTCTGCTGGCTCTCATGGACGTTTGTACCTCGGCAGAGGCGAGACTTCTACCTGAGAGCGCTCCGGAGGACGCAGCGCCTGAGATGACTCTGCAGGACGCTGATATGAAGATGAAAGAGGCCGCTTTGACTCTGCTCTCCATGGATCCTGACAGTACCGTGTCCTCCACCTTAATCCGCCGTGATACCAGGGAGGAACCGGAAGGGACTCGGACTGCCCCACAGCTGATGGAAGCCACTGCAGCAGAACAAGAAGAGTCTCGTATGGATGTGCCAACCGCTGCTGAAGCGGCGTTCACAGCCTCCGAGCCGTCACCAGTTGCATCTCAACAAACTGTTGAGCTCGTTGATGAGAAACCAAACGCTGCAGATGTGTCTGAAACTTCAGAGAAAGAAATGGATGTGGCAAGGGCTAAAATGTCTGAGTCTCCTACTccacagGAGGATGACACTACCTCAAACGAATGTCAGGCTCTTTTAAATGAGGATGAAGCCAAAAGTGCAGAAATTGCTCCTGAAACCCAGCCAGATGAAAACACggcaccaccaccagcagctgaTAAAGAAGCTGCTAGTGCTGTTGTGTCTGAAGCAGAAGAGGTCAGAGGAACCACGGATGAAAGCACAATTGCAGTTTCTTGTGATACCACTGAACAAGTCTCAGAAACTCCCACTAAACAAGAGCAAACTGAGCCAGATGTTGCAGATACAAAGACGATCCCAAAGGCTGAGGGAGTGGTAGCTGAGGACAACCAGGCCAAGATGGACGCAGATATTGGTGAAGCTGAGAGTAAGACAGCGGAGGAAGCAAATGTTGCAACAGAGAAGAGTGATCCACAAACTAAGACTGAAGAAATCGGAGAAAGTGGACCTGAGAGTCAGTCCAAACTGGTCAAACAAATCAGTAATGTCTCCAGCGCAGACAGCCAGGAAGATGAGAAGGGATCAGACTTGTCAGAAAAGGAAGAGAAGGCGGAGGGACGAGGAGGCAGACGTAAACGAAGGCTGTCCACTCAGAACATTGCAGCAGTGAAAGAATCTGGTGACGAGAGGGAtgaaaaagaaagtaaagagCAACAGTCTTCTGAGGAAACTGATCAGGAGAAGGTTGGTGAAGTCAGAACACCACGCAGGGGTCGATCATCCAAAACCACCGAGGAGGCAGAGAAGGACCAACCTAAAGAACCTGAGAAATTAGAGGAGACTTCGAGCCGCGGGCGAAGACGTTCAGGAGCTGCTGTCAAAGAAGCCAATGCTGatAATCAGAAGAAGGATGAGAATAAAGACGAGGAGAGCACCGATAAAACAACAACTAAACCAGCCGAGAGAGAAGAGACAACTGAAGAGGAAAGTGGACCAAGGAAAATTGCACGGCGAGGAAGTCAAGTCAATCTGCCGTCTCCTGTTCCAGAAAACACTGAAGCTGCAGGAAGCTCTGACTCCAAACCGACAACTGACACACATAAACCAGCAATGAAAAGGAAGAGATCAGAGGAATCTGAGGAGGAAGCCCAGGCTAAAGAGGAGGTGAAGAAGGACAACAGTCAAGAGGAACAACGTGAGCAACAACTTGACAGTGGTTGTTCCCCTTCAGTAAGCCAGGCAGAGAGTGAAGAGGAGATCTGCAGCGAGAAGAATCCAGATGATCTTGAGGAGGAGCAACAAGAGGACCAAGAGATAACTCCAAAGAGACCCGGGCGGAGGGGACGGTTGTCGAAGTCAGCTGCTGCCACAGAGGATCCAGataaaaaggacaaaaaggcAGAAGAAAGTGAGCAGAATGATGAAGAGGATGATGACGATGACGATGGTGATGGTGAGAaagaagagggagaaaaaggaaCTGCAACCAGAGCGACCACACGGTCAGCAGCTCGCCTGGAGGCTGAAAGAAACAAGCCAAGTAAACCCTCCACCCGGGCAAGTCGGCAGAGCGGTAAAGAGGAGACCACAGCTGGCACACGCGGGGCGAGGGGCCAGGCAGCAGCAGCGAAGGGGGGCCGTAAACGGGAGGCCAGCCCCCCTGCGGTGCGAATGCGGGGAGGACAGAAATCAGAGGAGCCCCCTTCCAAGAGAGCCAAACGCTAAAACCTCAGACAGCGGTGGACTGATTTGCCCCCGCAGCGTTTTCGCTGCACTCCATATTCAAGTCAGTTTTGTTATCGGGGGGTCAAAGAGCCTCTACAGTCAAGTTAGCATGTAAAGCTGTTTCTGCTTCATTGACTGTAGGTATTGAAAAGCTCTGGAGAGTATTATCCTCTCTCATCTGATGGTTGGGGTATAAACCTGAGGATCTGTGTAGAAATCCCCCCAGAATACCTTCTACTGCACTACGCCCATATGGTTTGGATCAGACTTCATCATTCCTCCGTTTATTCAGTAATGCCCAGTGAAGCAGAGTATTTCAGCCCAATCAAAGGCCTAACGTGCAGCAGAGTTGTGTTTTGAGATACAGAGGGTGAATTGAAACTAGAGGCCAGAGTGTGTCTCAGTTCCTGCTGAGACTGTAAATCCAAACACTTGTACAGAGAAATCACTGCGAAGCTTCTTCACCTTCAttgtgaattttattttttcaatattCATTCTGTGAATGAAAGGAGAAGTTCTTgtttttaacgtttttttttcttaatattCATAAGTTAAgggactttttttgttttaaataaaagattCGTCACAGACTGGGAAAACACGTGAACAGTTTCTCTATAAACTGAATCTACTTTATGACACGTGTAACAACGCCCGTTGCAGACAAAAGAACTGTTTCTTACTGTCTAAATGGAGGTAATCTAgttatttgtgttgttttaactGTATATCAACATAATGGTGTTAGATATCTTGCCTACCTGTTAATgcaaatacatttcttttttataaatgtaaaaatactgaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_005640565.1 lncRNA downstream 360492 27394324 ~ 27396031 (-) False LOC120567396
TU145500 lncRNA downstream 360540 27394158 ~ 27395983 (-) True LOC120567396
TU145476 lncRNA downstream 422449 27269370 ~ 27334074 (-) False atp8a1
TU145466 lncRNA downstream 503139 27252395 ~ 27253384 (-) False LOC120567151
TU145371 lncRNA downstream 664848 27091382 ~ 27091675 (-) True G108194
TU145587 lncRNA upstream 1596 27771851 ~ 27772071 (-) True G108352
TU145588 lncRNA upstream 2421 27772676 ~ 27772981 (-) True G108353
TU145614 lncRNA upstream 15855 27786110 ~ 27786783 (-) False aurkb
TU145629 lncRNA upstream 67313 27837568 ~ 27839107 (-) True LOC120567057
XR_005640513.1 lncRNA upstream 68083 27838338 ~ 27838921 (-) False LOC120567057
XM_039813233.1 mRNA downstream 12441 27740794 ~ 27744082 (-) True nkx3-2
XM_039813234.1 mRNA downstream 21004 27705212 ~ 27735519 (-) True rab28
XM_039813236.1 mRNA downstream 21220 27705212 ~ 27735303 (-) False rab28
XM_039813237.1 mRNA downstream 21220 27705215 ~ 27735303 (-) False rab28
XM_039813235.1 mRNA downstream 21220 27705215 ~ 27735303 (-) False rab28
XM_039813202.1 mRNA upstream 9877 27780132 ~ 27790211 (-) False aurkb
XM_039813203.1 mRNA upstream 9877 27780132 ~ 27785481 (-) False aurkb
XM_039813201.1 mRNA upstream 15782 27786037 ~ 27790211 (-) True aurkb
XM_039813204.1 mRNA upstream 29571 27799826 ~ 27802336 (-) True LOC120566642
XM_039813205.1 mRNA upstream 33103 27803358 ~ 27814189 (-) True mcm7
TU145467 other downstream 494403 27258247 ~ 27262120 (-) False LOC120567151
TU145368 other downstream 690576 27065418 ~ 27065947 (-) True G108191
TU145357 other downstream 755512 26989264 ~ 27001011 (-) True G108181
TU145230 other downstream 1295816 26457995 ~ 26460707 (-) False rpl36a
TU145117 other downstream 2468437 25279603 ~ 25288086 (-) True G107989
unassigned_transcript_477 other upstream 8878 27779133 ~ 27779214 (-) True trnal-aag_2
TU145627 other upstream 67593 27837848 ~ 27839107 (-) False LOC120567057
TU145628 other upstream 67593 27837848 ~ 27839107 (-) False LOC120567057
TU145691 other upstream 251482 28021737 ~ 28023229 (-) True G108433
TU146164 other upstream 2890657 30660912 ~ 30661623 (-) True G108777

Expression Profile