RNA id: XM_039813906.1


Basic Information

Item Value
RNA id XM_039813906.1
length 2478
RNA type mRNA
GC content 0.47
exon number 8
gene id LOC120567095
representative True

Chromosome Information

Item Value
chromosome id NC_053121.1
NCBI id CM020918.1
chromosome length 40300294
location 18666064 ~ 18677366 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TGAAATGCCGGACTTGCCGGTACTGCTTTACAACCACCCTTACATTGCAACACACTTATATTCCCAAACAGGCTGCAGGGCTTTAGGTTTCGCATGGGCATTTCCGCCACCGGCTTAGCCTTACTACGGTAGGAAAGATACGTcgtttgtgatttaataacatttcgcTATAGAGTAATTGAGCCCGGAAGTTCGAATCTGTGAATATCTTTCTAACTTTACCGAAGTCTTCACTGGTGCCGTGTGACGTCTGCGCTCTCTTTACTCTCGCATGTCCCAGAGTCATGGGTGAGCCTATccatgaacaaacacacactatctGTTCGTTCAGTCTGTCAAGTCTTCGCCGCTGTAGCTGTGGAATCATTTCAacaggagaggaggggggaTATTGACAGGTTGAGTGTTCAGGTTTGGAGCCCCAAGCAGAGTGGACCTGTCGTCCTAAAGAGTCTCCTGTGGTCAGCCCCTCGGACCTGGTGTCAAAATGGCCTCACGACGGGGAGACATTCCGGCACTTGAGTCTGTCCCGTCATCCGGACTATTTGGTGCCTTTTCATCTCCCATTGGAATGACTCGACACAGTGTCAGCTATGACGAGCTCATGGATGCCACCATGCATTCGCCACCTTCTGACTTGTCTGTCAACATCTTATGGAAAGACCCTGTCATCCCACAGCACAAGTTCAGGAACACTGCAGAGGAAGGCGAGAAGGGTGGGAAGTTGCTGACTTTTGAAGCAGCAGCGCCAGCGAAGTCCCCAGGGCCAGTTTTGAAAGCCAAAGCCACCTCTTTAATGAGCTCACTTATGATCAAGCAGGCCCAGGAGAACCTCCAGAAGTTTGAGCACCAGGCAGGACTCACTGATGCTGGGTATTCTCCCCACAAGGGGCTCTCTGCTGAGGAGACCCGCTTTCACCGACTGGTTGACGGCACAAAACCAAAGTTGAGAATGCCAAGCGGGGACTTCAAGGAGGACAGGTGTACAACATCAGCACAATCCACCCCAAGTGGCACCCCTTCTGTCACCCCCTCCGTCACCCCCAGCGTCACCCCCTGTGTTAGTCCCCACTCATCACCGGCTGTTAGTCGCAGGAGCTGGTTCCAGCTGAGTCCTGCGCCTTTTCTTGCCAACCCAGATCTCAATTGTCCCAACCCCAGCACAGACATGGGAGGaaatgagggaggaggaggagagaagtggAGCTTCTTTGGAACCCGACCCGTGGTACAGAAGTCCCCGACTGATCCAGGCTGTGAAACCAGCACAGGCTTTTCACTGCAGTCCTACTTCGGCATGCAGAAATCCTCTACCATGGATGGCACCAACAACCAGGTCAACTTCAAGGTAGACGACCCTGCCAAGTTCATGCCCCCCAAGATCGAAATCTCGGGCATTGAGGCCAAACGAGCGCCCACACGGCCACACAAACTTAAACCTCGGGACATGAATGTTTTAACACCTTCAGGCTTCTGAAGCCACACTGGCTGTGTACTAACACCTCTGTTGCTCGATTGCTTTCCTGCCTTCTTCTGCCTCCTTGCAAATGTACTGAGGCTGAGCGGAATGACGACCACCTGTAGTATTAGCTCACCAGCCCCAGAGACATCACCGCACTGTTACTCCTCCCCGAGACCTACCCACATGGATTTCAATCTTCTATTAGTCCCCACCACCCCTCTCCTATCTCCTCCAGCTCATTGGCCCAAATAAAACACCATATGAAGTACCTTCATTGTCATCCCTGAAGatggtgttttctttcttttttttgtattattgttgTTCTGTCACTTAATAGATGCATTGGCGCGCATTGCCTTGCTGTCCTCGTTCCATAGTCAGTGATGGCATGAGATTGGAGTTGTTGAAATATCTTGTCAGTCCTTTTGCTCAAGCTAATCACTTTAGAATTGCCTCGTGAAAACTGACCAGCTATTTCAATTCATAATTCTCAGTTGCctcatttcttattttttttattttgaataagCTCACAGCTTTGTAGTTATGTAGTGCTTTTCTCTGTTGGCATGCAGAGTATTGTGTAGTAGGATGACTGCTGTTGTGCCTAAACTTGCGGCATGTTTGCCATACAATtacagcttttttttattatatggaAGAACATATTATTTTAccgtgtgagtgtgtatgatgacctgattttttttattttaattattattatttcaacttCAGTATTTTTGATATTGTTCTGCTTTAAATCAACATTGTTCATTCTAAATAATAGTGTTGGGTTTATCACATTTTTATATTGCATCACAATATaatttcaacatgctataaaaATGCCAAGCATTGAAGTGGTCATTTTCAATTTAGCTTTTTCTGTGTCACAATACAAGAATCCCTGCTGTTTATttgaaaaattgaattgaattcccGTAAGTAATTGCACAAGGGAGATCGTCTCCCACTTACGTCTGTAAATAAATCTGATAGTACCAAGCAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU142304 lncRNA downstream 114380 18550110 ~ 18551684 (-) True G105967
TU142250 lncRNA downstream 351663 18285958 ~ 18314401 (-) False reep2
TU142139 lncRNA downstream 597608 18067449 ~ 18068456 (-) False LOC120566360
TU142128 lncRNA downstream 630307 18035382 ~ 18035757 (-) True G105835
TU142127 lncRNA downstream 630816 18033407 ~ 18035248 (-) True G105834
TU142426 lncRNA upstream 32676 18710042 ~ 18729032 (-) True G106057
TU142435 lncRNA upstream 321174 18998540 ~ 18999875 (-) True G106066
TU142437 lncRNA upstream 324406 19001772 ~ 19002114 (-) True G106068
TU142448 lncRNA upstream 340386 19017752 ~ 19018811 (-) False rgs14b
TU142450 lncRNA upstream 369898 19047264 ~ 19047863 (-) True G106073
XM_039813051.1 mRNA downstream 7505 18642492 ~ 18658559 (-) True gfpt2
XM_039813239.1 mRNA downstream 25256 18622123 ~ 18640808 (-) False mapk9
XM_039813238.1 mRNA downstream 34134 18620133 ~ 18631930 (-) True mapk9
XM_039813037.1 mRNA downstream 59349 18553669 ~ 18606715 (-) False LOC120566508
XM_039813036.1 mRNA downstream 91913 18553669 ~ 18574151 (-) True LOC120566508
XM_039812569.1 mRNA upstream 465 18677831 ~ 18679252 (-) True LOC120566256
XM_039812568.1 mRNA upstream 7682 18685048 ~ 18686432 (-) True LOC120566255
XM_039812570.1 mRNA upstream 12151 18689517 ~ 18691388 (-) False LOC120566257
XM_039812729.1 mRNA upstream 22058 18699424 ~ 18701803 (-) True si:dkeyp-72g9.4
XM_039813617.1 mRNA upstream 28729 18706095 ~ 18908295 (-) True LOC120566918
TU142254 other downstream 360369 18303269 ~ 18305695 (-) False reep2
TU142092 other downstream 674193 17987258 ~ 17991871 (-) False sfxn1
TU142030 other downstream 870841 17783560 ~ 17795223 (-) False LOC120567448
XR_005640507.1 other downstream 1088253 17522141 ~ 17577811 (-) False nexmifb
TU141756 other downstream 1514496 17142146 ~ 17151568 (-) False tmsb1
TU142417 other upstream 10422 18687788 ~ 18691410 (-) True LOC120566257
TU142573 other upstream 538623 19215989 ~ 19219144 (-) False LOC120566717
TU142773 other upstream 802652 19480018 ~ 19482558 (-) False tlr1
TU142874 other upstream 1295049 19972415 ~ 19981133 (-) False fgf18a
TU142968 other upstream 1553542 20230908 ~ 20233924 (-) True G106443

Expression Profile