RNA id: XM_039813954.1


Basic Information

Item Value
RNA id XM_039813954.1
length 2170
RNA type mRNA
GC content 0.45
exon number 7
gene id trmt12
representative False

Chromosome Information

Item Value
chromosome id NC_053121.1
NCBI id CM020918.1
chromosome length 40300294
location 24943448 ~ 24948186 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

ataagcaAGCGGAGTGTGATTGGTTAGGGTAAGAGTAAACATTTCAGGgaaagccaatcagaggcagagtagagCGGAACATGCCTTCACCATCCTGGTTCCTGGTTCTCTTACATCCCTGTCTATGTTACATCCCTGGGAAAAATACTCGCCTACTGTTTATCTCTAATTTCCGTTTATATAAATTAGATATTTATGTTTGCGCTTTTTAACCGtcaaacataaatacagtggGTTTGTATGTTTGCTCACGAATGGAAGGTGTGCCTTGCCTTCGTGTGTCGCAGTGTCATGCACAGCAGTTCAGGACATGTCTTCAGTCCAAAGGGGCTCTTGATCCGAGTTTGTGTTTACTGAAAGACTCAGATGGGACAGTCCTCTTGCCCATTTTACCATCCTGTCTTTCACAACTTGATCTGCAATCTCTCAGAACCATGGTGGCTTCAGACGGTGCTTGTGAAATAGTTAGGAGTCAGaagagaggaagaacaAGTGGTAATAAACTGGAGCAAATCCTCCAGGAGCTGTTGGAATCTCATGGTGAAAGATGGACAGAGGAGCTGAGGGGGGATCTCCCTCGCAGCTTCCAGAGGCATGAAGACCTATTCCTGTTGGGAGACAACTGCTTTTCTCTGCCATTATGGAAGAAAATGGGTCCACAGCTATGGAGTGCAGTGGCCAAAGGACTGGGGGCAACGCGGCTGGCAAAGATGAGTCAAATATCCAGGGATGGATTTAGGTCTCCCGTGGTGACCATGCTGTTAGGAGAGCACAGCTGGGTCAAACATGTGGACAATCGGATTAAGTATGAGTTTGATATAACCCAATGCATGTTCTCAGCTGGAAACATAACAGAGAAGCTGCGGGTGGCTGGATTTGACTGCAGAGGGGAGACTGTGGTGGATTTGTATGCAGGTATTGGATACTTCACTCTCCCATATCTGGTCCATGCGGGGGCCAGTCATCTTCACGCCTGTGAGTGGAACCCTGATGCAGTTGAAACGTTACAGAAAAACCTTGTGGCCAACGGGGTGTCTGACCGCTGCACTGTTCACCAGGGAGACAACCGACAActccGGCTGTGTGACATTGCTGACCGAGTGAACCTGGGTCTCATACCGAGCTCTGAGGACGGCTGGCCTGTTGCCTGTCGCCTGCTGAAGAGAACAACTGGTGGAATTTTGCACATTCACCAGAACGTTACCTCAGTGTTACCGAACACTGCAGCCATCCCAGCAATCAATGATGCCACCCAGAGGGTTTCTGGGAAGAAAGCTGACAGAGAGGTGTGGCAGGCCTGGGCTGATGACACAGCAAACCGCATTGCTTCTCTTTTAAAAGACATCACTGGTGCACGGTggataacaaaaaaacagcacataGAACATGTGAAGTCATATGCACCTCATGTTCACCATATTGTGCTGGACTTGGAGTGCAGACCATCCTGAGCTGAGGAGATAAACACAGATGTGGACCCTATGGCATTCTTTATTTGAATATGCTGCAGTCTAGAAAAGAAATAGGCAACTGTATAGTTCAGATGTTTCCAGTGCAACCAAACACTATACCAGCTGGTCTATATGATTATTTAATCTGTCAGATATACGGTAGTCAGCTGCAATATTTTTATAGAACTTTATTTATGCAGGGCAGGGTCACTGTGCACAaatactgttttgtttttttagaaaggCTCTGCCTCATACTCATACAAATATAATCCCATCTGGAAGCTGCCAAGCCATACTAAATCCACAGCCTTATCTGTTGGACAGCATTAGTGGGTttaggtgccttgctcaagggaacCTCAATGTTGTGTCATACTCACTGAATTTCCCTTTGGTGTTTGATACCTACATTTCTTGTGGTTGGCTAAAATGGAAAGCTTTAGACTGAGGCATGACTCACATCAGTGTGCTGGTATTACAGAAACACTCAAACCTATAAAACTCCCCCAACATAAATTTGAATAGGACATTGATAtcatataaacatacagtacaactCTGCTTTGTCAATATATCTTTAGAACTTCAGAAGGCAGCAGCCAATTGAATCAAccctaattaattaattcaacaCTACTTGACAGTTTCACTTCTGAGCCATAAACAGGTGACAAATTAAAGAAAGAATACCTTATTAAATGAGTGGATAAACAGAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU144967 lncRNA downstream 52732 24890301 ~ 24890716 (-) True G107890
TU144966 lncRNA downstream 58021 24885009 ~ 24885427 (-) True G107889
TU144965 lncRNA downstream 59192 24884000 ~ 24884256 (-) True G107888
TU144964 lncRNA downstream 59691 24883130 ~ 24883757 (-) True G107887
TU144962 lncRNA downstream 61578 24876822 ~ 24881870 (-) True G107885
TU144988 lncRNA upstream 29697 24977124 ~ 24980797 (-) True G107903
TU144993 lncRNA upstream 125754 25073181 ~ 25073832 (-) True G107907
TU145020 lncRNA upstream 233511 25180938 ~ 25186478 (-) True G107923
TU145024 lncRNA upstream 233511 25180938 ~ 25186478 (-) False G107923
TU145077 lncRNA upstream 315752 25263179 ~ 25264862 (-) False ndufa1
XM_039813947.1 mRNA downstream 1077 24928701 ~ 24942371 (-) False sytl4
XM_039813946.1 mRNA downstream 1077 24928701 ~ 24942371 (-) True sytl4
XM_039813960.1 mRNA downstream 24697 24912563 ~ 24918751 (-) True tspan7
XM_039813945.1 mRNA downstream 32029 24908896 ~ 24911419 (-) False mid1ip1l
XM_039814432.1 mRNA upstream 36066 24983493 ~ 24993304 (-) True sash3
XM_039812669.1 mRNA upstream 53328 25000755 ~ 25013890 (-) True xpnpep2
XM_039813392.1 mRNA upstream 182719 25130146 ~ 25147858 (-) True vimr2
XM_039813389.1 mRNA upstream 200519 25147946 ~ 25165755 (-) False ocrl
XM_039813387.1 mRNA upstream 200519 25147946 ~ 25165755 (-) True ocrl
unassigned_transcript_475 other downstream 81264 24862112 ~ 24862184 (-) False trnav-uac_15
TU144931 other downstream 364349 24573441 ~ 24579099 (-) True G107864
XR_005640439.1 other downstream 1051147 23886824 ~ 23892301 (-) False rab41
unassigned_transcript_474 other downstream 1569440 23373936 ~ 23374008 (-) True trnaf-gaa_66
TU144162 other downstream 1756437 23184272 ~ 23187011 (-) False rnaseh2c
TU145115 other upstream 332176 25279603 ~ 25282199 (-) False G107989
TU145117 other upstream 332176 25279603 ~ 25288086 (-) True G107989
TU145230 other upstream 1510568 26457995 ~ 26460707 (-) False rpl36a
TU145357 other upstream 2041837 26989264 ~ 27001011 (-) True G108181
TU145368 other upstream 2117991 27065418 ~ 27065947 (-) True G108191

Expression Profile