RNA id: XM_039813963.1


Basic Information

Item Value
RNA id XM_039813963.1
length 1940
RNA type mRNA
GC content 0.48
exon number 11
gene id rbm22
representative True

Chromosome Information

Item Value
chromosome id NC_053121.1
NCBI id CM020918.1
chromosome length 40300294
location 19073982 ~ 19079321 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CTGGCGCGGTGCATTGTGGTCTGACACCTCTTGTGTCgtcgttgttttttttggcccGTTTGGCTCGCACTCTCCAAAATGGCGACATCCCTAGGATCCAACACCTACAATAGACAGAACTGGGAAGACGCGGATTTTCCAATTCTGTGTCAGACATGTTTAGGAGAAAACCCTTACATCCGTATGACCAAGGAGAAGTATGGGAAAGAATGCAAGATTTGTGCTCGACCATTTACCGTGTTCCGATGGTGTCCAGGGACACGAATGCGTTTCAAGAAGACGGAAGTCTGTCAGACCTGCAGTAAAATGAAGAATGTTTGTCAGACATGTCTGCTGGACCTGGAGTATGGTTTGCCTATCCAGGTCAGAGACACTGGGCTGTCAGTTAAAGATGAGGTTCCTAAGTCAGATGTGAACAAAGAGTACTACACACAGAACATGGAGAGAGAGATAGCCAATTCTGATGGCACACGGCCGGTGGGGCAGCTAGGTAAAGCTCCCAGCTCTAGTGATATGTTGCTGAAACTTGCCCGGACCACTCCATACTACAAGAGGAACCGGCCACACATCTGCTCCTTCTGGGTGAAGGGAGAGTGTAAGAGAGGGGAGGAGTGTCCCTACAGGCACGAGAAGCCCACAGATCCTGATGACCCTCTGGCTGATCAGAACATAAAGGACCGTTACTATGGCATCAATGACCCAGTGGCTGACAAGCTGCTAAAACGTGCCTCAACTATGCCCCGACTGGACCCACCAGACGACAAGTCCATCACCACCCTGTACATAGGGGGTTTGGGAGATACTGTCACTGATGGAGATCTCAAGAGTCACTTTTACCAGTTTGGTGAGATTCGCACCATTACCATAGTCCAGAGGCAGCAGTGTGCCTTCATCCAGTTTGCCACTCGGCAGGCAGCTGAAATGGCTGCTGAGAAGTCCTTCAACAAACTCATCATTAATGGCCGGAGGCTCACTGTCAAGTGGGGAAGGTCACAGGCAGCCAGAGGGAAGGAGGGCATCAAAGATGGCATCAGTGAGATGGGCACCAGACTTGATCCTGTCCCTGGACTTCCTGGAGCTCTTCCTCCACCACCAGCTTTAGATGAAGAAGCACCTGCAAACTACTTTAACCTGGACCCTAGCACCTCTCCTGCCGTCATGAACATTGCTCTGCCCCCACCTCCAGGCATCAACCCGCCTCCTCCAGGTTTCGGCCCTCCAATGTTTCACCCCATGGGTCACATGGCTCCCCCTATGCCCCCTCCGATGAGCATGAGACCTCCAGGTCAAATCCACTACCCCTCCCAGGATCCTCAGCGCATGGGTGCCCACGCCGCACATGGCTCACGTCATGGTGATTAGCTGCTAGATTGAAGTCATACTGCGATTAGGTGTCATTCTTTTCCTTAGGTCAAACCTGGTCAGGTGCATTTACTTCAGATGCTGTCAGTGGGCCTGAAAGCTGCAGACTACTTCTGGGAGAAAGCAGTTATGTCTTACAGGATAAACATCTGATTTATTATGCCACCTGCAGTGAGTGAACTAAAGGAGCACCGTCTGTGTCTGGAGAGACCACAACCAGGAGAGTACAAGATGACTTTGTCGCTACTTGCAGTTAAAAAAAGTACCAGAACGGCATCAGCAGACTTCAGACATGAGAGTACTGGCCAATATTATCGGGGCCATATGGTTTTTACAGGCTCTTGCGGTTGGAGCCATTGTACATATAAAAATGTGTACCGTCAGTTAAACTTGAATTTGTCACATCGTGCAACATGGGGTAGAATTCTGAGGAgcatttttaaacatgttaattttgaatcatttttttttttatttgacacaaTCTTAATATTCCACAGCATAATGACTTTGTTTATTGTAAGGCTTTCTTTGAATGTTATTTTCACTTGTCATTAAATTGACCCAATTTTGTCATT

Function

GO:

id name namespace
GO:0046872 metal ion binding molecular_function
GO:0000166 nucleotide binding molecular_function
GO:0003723 RNA binding molecular_function

KEGG:

id description
K12872 RBM22, SLT11; pre-mRNA-splicing factor RBM22/SLT11

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU142463 lncRNA downstream 1240 19072063 ~ 19072742 (-) True G106085
TU142462 lncRNA downstream 2799 19070848 ~ 19071183 (-) True G106084
TU142451 lncRNA downstream 18288 19049374 ~ 19055694 (-) False G106074
TU142452 lncRNA downstream 20973 19049374 ~ 19053009 (-) True G106074
TU142450 lncRNA downstream 26119 19047264 ~ 19047863 (-) True G106073
TU142523 lncRNA upstream 49965 19129286 ~ 19130991 (-) False G106128
TU142520 lncRNA upstream 53299 19132620 ~ 19134013 (-) True G106128
TU142574 lncRNA upstream 135479 19214800 ~ 19215918 (-) True G106164
XR_005640452.1 lncRNA upstream 182709 19262030 ~ 19262872 (-) True LOC120566722
XR_005640450.1 lncRNA upstream 183592 19262913 ~ 19265476 (-) True LOC120566720
XM_039813332.1 mRNA downstream 5911 19059277 ~ 19068071 (-) True LOC120566723
XM_039813331.1 mRNA downstream 5915 19059277 ~ 19068067 (-) False LOC120566723
XM_039813333.1 mRNA downstream 5916 19059277 ~ 19068066 (-) False LOC120566723
XM_039813337.1 mRNA downstream 29031 19017752 ~ 19044951 (-) False rgs14b
XM_039813335.1 mRNA downstream 29031 19017752 ~ 19044951 (-) False rgs14b
XM_039814250.1 mRNA upstream 64388 19143709 ~ 19145147 (-) True slc35a4
XM_039814255.1 mRNA upstream 65917 19145238 ~ 19147027 (-) False LOC120567311
XM_039814253.1 mRNA upstream 65917 19145238 ~ 19146741 (-) True LOC120567311
XM_039814252.1 mRNA upstream 65917 19145238 ~ 19146589 (-) False LOC120567311
XM_039813990.1 mRNA upstream 82427 19161748 ~ 19175741 (-) False LOC120567146
TU142417 other downstream 382572 18687788 ~ 18691410 (-) True LOC120566257
TU142254 other downstream 768287 18303269 ~ 18305695 (-) False reep2
TU142092 other downstream 1082111 17987258 ~ 17991871 (-) False sfxn1
TU142030 other downstream 1278759 17783560 ~ 17795223 (-) False LOC120567448
XR_005640507.1 other downstream 1496171 17522141 ~ 17577811 (-) False nexmifb
TU142573 other upstream 136668 19215989 ~ 19219144 (-) False LOC120566717
TU142773 other upstream 400697 19480018 ~ 19482558 (-) False tlr1
TU142874 other upstream 893094 19972415 ~ 19981133 (-) False fgf18a
TU142968 other upstream 1151587 20230908 ~ 20233924 (-) True G106443
TU143328 other upstream 2048517 21127838 ~ 21130970 (-) True G106728

Expression Profile