RNA id: XM_039813979.1


Basic Information

Item Value
RNA id XM_039813979.1
length 2885
RNA type mRNA
GC content 0.46
exon number 10
gene id dpf2l
representative False

Chromosome Information

Item Value
chromosome id NC_053121.1
NCBI id CM020918.1
chromosome length 40300294
location 22830410 ~ 22840569 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TTTCACCCTGTGAGGCAGTAACGGTCACCAACGTCTATGCGCAGGCGCAGTGGTACTTCACACAACCGCAATAAGCAAACATGGCGGCGGCCGTCGACAGTGTTGTGAAAGTGCTGGGAGAGCAGTACTATAGAGATGCTATGGAGCAGTGTCATAGTTACAACGCTCGCTTATGTGCTGAGCGCAGCATCCTCATGCCTTTCTTGGACTCTCAGACTGGTGTAGCCCAGTCTAACTGTTACATCTGGATGGAGAAGAGACACCGGAGTGCAGGTGTAGCTCCAGGGCAGCTGTACACTTACCCAGCCCGTCGCTGGAGGAAGAAACGCCGTTCCCACCCCCCTGAGGACCCCCGCTTGGCCTTCCCCCCTCTCAAAGCAGCAGATTTGGAGCTGGGTCTGAAGCGTGATGCTTTGGGGACTGTGGATGGCAGCAGTCTGGAGGCCCTGCTGAAAGGGGAGCCCCTCGACAGGAGGAGCGGAGTGTCGGACCTCCGCGGCCCTGAAGATGACTCCGTAACTGTGGAGCCTCCTGCCACCTCAGCGGCCACTCACACGTCCTCTGGGCGTGTCCGCAAGCGAGTCCTTGACCACGACGACTACTTGGACGACCTGGATGATGACGACTTTGAGGACGAGACCCCCAAGAGACGAGGCAAGAGCAAGTCCAAGGGTCGCAGTGACAAGAATGGCAAGAAAAAACAGGAGGCTGCAGCTGCAGCGCTGGAGGAGAGGGACAAACCTTATGCCTGCGACACAACTAAGAAGGGTCCCAATGGGCTGGCGCTGCCCAACGATTACTGTGACTTCTGTCTTGGAGACTCCACTTTAAACCAGAAGACTGGCCAATCAGAAGAGCTAGTGTCCTGCTCAGACTGTGGACGCTCAGGCCATCCAACATGCCTGCAGTTCACACCAGTGATGATGGCTGCAGTGAAGACCTACCGCTGGCAGTGCATCGAGTGCAAGTGCTGCAACGTTTGCGGCACCTCAGAGAATGACgaCCAGCTGCTGTTCTGTGATGACTGTGACCGAGGCTATCACATGTACTGTCTAAGTCCCCCCATGACTGAACCACCAGAGGGGAGCTGGAGCTGCCACCTGTGCCTGGCTCTGCTGAAGGATAAAGCCTCCATATACCAGCAGAACCAGAGCTCCGCCCCCGAGTGACATCATATCAACAAGTCCCGCCCCATCAGTAACGGGACCCACCCCCGATGGAAACGTCAGACCTCCTCTCAGTCCGGAGCTCCAGGCTCTGTCCAGATGTAGCAGGGCCAGATTGCAGATCAGCTTTAGAAGTCTTAATATCTACAGTGTCAGTGGGGGGGATCAGTCAACATGGGGATCAATCTATCACTACTAACCTGCCTGCAAAGCCCCCGAGGCTTGCCAACACCTACATATTGTGCTTATagtatagacacacacactctcccagACTGTTACACACACTAGATACTGAGACAGAGAGCGTGCAGTAACCATAGTAACTGCTCTCTCCATGGGAGCTCCCAGGAGCAAACGGGTTAGCATCACAGCTAATTATCTGCACCCtttcacactcacagacacagtgTGGACTGTTGGGACAACACAGTTTTTCTTTCTGCCAAATTATCTATTTTTACTCCCTGAATGtggggaaaaaggaaaaaaaaatcaccatgTATATGGTCGaggaatattattattattattattattattattattattattactattgttATTGTTCTGGTTACTAGTGGACTTTTGTAGTGGCATTTGTCTGTGTACTTTTGTCTGACCCATCGGAGCGTTATTTTTTGAAAAGGTTTCCCTGAGGGGAGCTAGTCAGTGCCAAGGTCCACCATCATCAAATACGCGCAACAATGACCCATGGAGCTTATCATAATTATTTCAACCATCTTTGTTTCATTTAAAATCAGAAGGACGACAAAAAACTGTCTTTGACTCATTAAGCTGTTAGCACAAAATCTTTGACCTTGCTACTTTAGGGTTGCACCAAAACCAACTTTTCATCTCTGATTCTGTTACCGGTTTGATCAGTTTTATCAAACACTAAAAACAGAGCATATACTGTAAAGGTATGTGTCCACTGGCACAGTGGGCAGTAAGGAGAAACTGATAACTGCCAGTGGGAAGCCCATCGAGCTTCCAATGTTGGGAAGTGGGGCGATGCCTATGTGGACACGTACCATAAGTGGGACTCATGAGACAAAACATTTAGTATAATGCCTTTCTTCGATATTAATTCTCCGTTAGACAGAGCTAACATTCTCTTATTCTGAAAAGACAGACTTGATAAGTCAGATAATGCTGTTCTTATCAGGGGAAACTGACCAATACATGGAACTAGTAACTAGTATTCTCCTCAAAGACGTTTGTGCTAGCTTTTTAGAAACACGGTATTTTTAAACTGCTGCTGTCAAACCGATGACACAGAATCATTTACAAACTGTAGCTGCTTTTATCATTTGTCACACAGAGGCAGATTTGCATGCAGATTGCACCTGTATAAATGCAGACACTCACACCACAAGTGTttttgattttttgttttgtattgtttttttgttttttacattttatattaccTGATATTCCATTGGTACTGGGAGTTTTTCTAGTAGAATTTTGTAAAGTCTATGGTATAGCAAACACTTCAAGTATATAGCTCCTAATGCATTCTATGTACTGTAttgactttttctatttttgttaTGACTGTGACATGTTTGAATTTATTTGATTATTCTGATATGTCAGACCTCCATTATGAGTATTTGTAAAATTATGTACTTTGTtgtactatttttatttttacattgctTTGGTATCAAAACCGATTTAGCCTGACAATAAAAATATCTTTGAATTATG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU143915 lncRNA downstream 111640 22713037 ~ 22718770 (-) True G107102
TU143905 lncRNA downstream 144952 22683733 ~ 22685458 (-) True G107097
TU143869 lncRNA downstream 224742 22601140 ~ 22605668 (-) True G107072
TU143866 lncRNA downstream 235529 22592660 ~ 22594881 (-) True G107070
XR_005640456.1 lncRNA downstream 238164 22590860 ~ 22592246 (-) True LOC120566739
TU143987 lncRNA upstream 15556 22856125 ~ 22856346 (-) True G107160
TU144057 lncRNA upstream 34927 22875496 ~ 22876459 (-) True G107215
TU144063 lncRNA upstream 88285 22928854 ~ 22973760 (-) True G107220
TU144149 lncRNA upstream 251996 23092565 ~ 23173418 (-) False trpt1
TU144152 lncRNA upstream 329579 23170148 ~ 23224456 (-) True G107282
XM_039814021.1 mRNA downstream 47193 22778405 ~ 22783217 (-) False LOC120567161
XM_039814020.1 mRNA downstream 47193 22778405 ~ 22783217 (-) True LOC120567161
XM_039814022.1 mRNA downstream 47193 22778906 ~ 22783217 (-) False LOC120567161
XM_039814009.1 mRNA downstream 87339 22718894 ~ 22743071 (-) True slc16a2
XM_039812945.1 mRNA downstream 452044 22375266 ~ 22378366 (-) False tsc22d3
XM_039813682.1 mRNA upstream 21579 22862148 ~ 22874782 (-) True si:ch211-168f7.5
XM_039813774.1 mRNA upstream 43516 22884085 ~ 22899160 (-) True ehd1a
XM_039813605.1 mRNA upstream 69588 22910157 ~ 22918782 (-) True si:ch211-114c17.1
XM_039813610.1 mRNA upstream 79275 22919844 ~ 22934564 (-) False ganabb
XM_039813607.1 mRNA upstream 79275 22919844 ~ 22934564 (-) True ganabb
TU143931 other downstream 137579 22691160 ~ 22692831 (-) True G107117
TU143804 other downstream 710343 22119685 ~ 22120067 (-) True G107015
TU143775 other downstream 1039685 21790253 ~ 21790725 (-) True G106988
TU143328 other downstream 1699440 21127838 ~ 21130970 (-) True G106728
TU142968 other downstream 2596486 20230908 ~ 20233924 (-) True G106443
TU144086 other upstream 150418 22990987 ~ 22993229 (-) True G107235
TU144154 other upstream 289140 23129709 ~ 23134785 (-) True G107284
unassigned_transcript_471 other upstream 320290 23160859 ~ 23160930 (-) True trnaw-cca_10
unassigned_transcript_472 other upstream 320819 23161388 ~ 23161459 (-) True trnaw-cca_11
unassigned_transcript_473 other upstream 324788 23165357 ~ 23165428 (-) True trnaw-cca_12

Expression Profile