RNA id: XM_039813990.1


Basic Information

Item Value
RNA id XM_039813990.1
length 5069
RNA type mRNA
GC content 0.46
exon number 22
gene id LOC120567146
representative False

Chromosome Information

Item Value
chromosome id NC_053121.1
NCBI id CM020918.1
chromosome length 40300294
location 19161748 ~ 19175741 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GACTTCAGTGGTTAAGAGACTGTAAACAAGCAGAAGGGGGAAGAAGGGACTCTTGTGTATCTCTGGATGTTGGAAACATCAAACCCAGGGAAGTGATTATATCCCTCTGTTAAACTGAAGATCATTCAGATTGGGTTCATAGCACACAAACCTCAAGATTCAAACTGCAGGTTTGGAGTTGATCCAGGATGCAGCCCTACCTCGCTCTGCTGCTGGGGATTGTGGCCTCTGCATCAGAATGGAGGAGTCCAGTGATCAAGTTCAACTCTAAGGTGGTGGAGAGTTCTGAGGTGGTGGTCAGACCTGGGACCCCTCTGGATCTGAGGTGTGAGGGTGACAGGCCTGTAAACTGGCAAACAAGGCTAGCCAAACACAGACGCTTTGTCTCCAAGGGCAATGGGAACGTCCGCACCTTGAAAGTGGAACGTCCCTCTGCAGAGTTCACTGGAACATACAAGTGTTTCTACACTGATGGGCCACCGCAACTGACCTCCTCAGTGCATGTGTATGTAAAAGATCCAAACCGTGTGTTCTGGACCAGCAGCACGTCCCTGCGGGTGGTGCGGAAGGAGGGTGAGGACTATCTGCTGCCCTGCCTGCTGACCGACCCAGCAGCCACAGACCTGGGCCTGCGCATGGACAACGGCACCTCCGTGCCGCCAGGGATGAACTACACAGTTTACCGGCACCGTGGTATTCTTATCCATAAGCTTCACCCCCGCTTTAATGCCGACTATGTCTGCACAGCCAAAGTCGGCAGAGTGGAGAGGACCTCCAAAGCCTTTTCCATCAACGTCATTCAGAAGCTTCGTTTCCCTCCATATGTCCTCTTAGAGACTGATGAATATGTGCGCATTGTTGGGGAGGAACTCAAGATTCGCTGCACAACACACAACCCCAACTTCAACTACAATGTCACCTGGACATACAGCACCAAGTCGAAACCAACGATAGAGGAGAAGGTTCGCTCCAGTGGAGCAAATCGCCTGGACATACAAAGCATACTGACTATCCATGCAGCGGACCTTGCAGACACAGGAAACATTTCCTGCACTGGCACTAATGAAGCAGGGGTGAACAGTTCAACGACATACCTGCTGGTTGTAGACAAGGCCTACATCAGGCTGCTGCCCCAGCTGTCCCCTAAACTGGCCCACAAGGGTCTTTCAGTGGAGGTGAACGAGGGAGAAGATCTGGAGCTCACCGTGCTGATAGAAGCGTACCCCCAAATTACAGAGCACAGATGGCACACCCCAACATCTCCCAACACGTCCACACAGGAGCACAAGCTCATCAGATACAACAACAGataccATGCTACTCTGCAGCTGAAGAGAATGAATGCACAGGAGCAGGGGCAATACACCTTCTATGCCAGGAGCGAATTGGCCAATGCATCTATCACATTCCAAGTTCAAATGTATCAGAGACCCGTTGCTGTGGTCAGATGGGAAAACATAACCACACTCACTTGCACCTCATTTGGCTATCCTGCTCCCAGAATCATCTGGTACCAGTGTTTTGGGATACGGCCTACATGCAATGAAAACACCACAGGGCTACAGCTGGCGATCCCGCTCCAGGCACCCACAGTGGAGGTGCAGAGGGAGGAGTACGGGGCCGTGGAGGTGGAGAGCGTCCTCACCGTGGGGCCTTCCAGCCGGAGGATGACAGTCGAGTGTGTGGCCTTCAACCTTGTCGGCGTCAGCAGCGACACTTTTGCCATGGACGTTTCTGACAAACTCTTCACTTCCACCTTGACTGGAGCAGCCGGCATTCTGGCCATCCTCCTTTTGCTACTGGTTTTTCTGTTATACAAATATAAGCAGAAACCCAGGTATGAGATCCGTTGGCAGATTATTGAGGCAAGAGATGGAAACAACTACACCTTCATTGACCCCACTCAGCTGCCGTACAATGAGAAGTGGGAGTTCCCGAGAGACAAACTGAAGCTAGGGAAGATCCTGGGTGCAGGAGCTTTTGGAAAAGTCGTTGAGGCAACAGCCTACGGTCTGGGAAAGGAAGACAATGTGGTGCGTGTAGCTGTGAAAATGTTAAAAGccaGTGCCCATTCGGATGAGAGGGAAGCTCTGATGTCTGAACTGAAGATCCTGAGCCACCTGGGACACCATCAGAACATTGTCAATCTATTGGGAGCCTGCACCTACGGAGGACCGGTGCTTGTGATCACAGAGTACTGCAGCCTCGGTGACCTCCTGAACTTCCTTCGCCTGAAGGCAGAGACGTTTGAGAACTTTGTTATGAACGTTCCAAATGTTATAGAGGACTCTATCGACTACAAGAACATCTGCAGTCAGAAACAGTTCATTCGAAGTGACAGTGGGATATCCAGTACACCTTCAAGCAGTTACTTAGAGATGAGACCCAGCCAGGTGGAATCATCTCCAGactctgtgtgtgaggagacTGGTGACTGGCCGCTGGACATTGACGACTTGCTGAGGTTTTCCTTTCAAGTTGCTCAGGGCCTTGACTTTCTGGCTGCCAAAAACTGCATTCACAGAGACGTGGCTGCTAGAAATGTCCTCTTGACCGACCACAGAGTGGCCAAGATTTGTGACTTTGGCCTGGCACGTGACATCATGAATGACTCCAACTACGTGGTGAAGGGCAACGCCCGTCTGCCAGTGAAGTGGATGGCTCCTGAGAGCATCTTTGACTGTGTGTACACGGTCCAGAGTGACGTCTGGTCCTATGGCATCCTCCTGTGGGAGATCTTCTCTTTGGGCAAGAGCCCCTACCCCAGTGTGGCTGTGGATTCCAGGTTCTACAAGATGGTTAAGCGCGGCTACCAGATGTGCCAACCAAACTTTGCCCCAGCTGAGATCTACATGATCATGAAGATGTGCTGGAATCTGGAGCCTACAGAGCGTCCAACGTTTAGCAAGATCACTCAGATGATAGAAAGACTACTCGGGGACCAACCTGAGCAGGAACTGCTAATCTACCAGAATGTGCAGCAGCAGGTCACAGAGGGTGAAGTGTGTGACGAGCCCAAGTGCTGCGACAGCCCCTGTGACCGGTCTTGTGACcacgaggaagaggagcagcCTCTGATGAAGACCAACAACTACCAATTTTGCTGAAAGCCCTAACCGCCAATCAATCAGTAAATCAATCACTCATCAACAAGCATCAGGAAAGCGGGATCAGCTGTAGTTCGTGGCCAGAGTATACCACAGCTTGTTCTAAACCGCCAGACGGTCGCAGAGTCGCCTTCACAGCTATTTTTTGCCTGTTGTTCCTTCTCGCCAGACAGACAAGCAGCTGCAGCAAACATGTGACTTGCTTCTTTGCAGACCATGACTAGAAATTGCCACGTCTAACACCAACTGCAGACATGAAAGGAGGGAGCACGTCAACAAACTGCTCAAGCATCCAAAGCTGTACCTTATCCTAAACATTTCTCCCTCACAGACTGTTTATCACTCCTTCTGATGTGTAGCTCTTTGAGGTGTAATCTGTTATCCAAAGGATAATCTGTTGAGtgtttttaacaatatattgTACACTGTTTATTACTGCCCCATGACggtaaatgtctttttttttctgtagagGTTTCAGTCACTTTTGTCAGCAGGTTCACTTCCTTTTCATCATTTTATTGCAATTCTCAGAGGAAGCAACCTAACAGCCACATACAATAgatccacaacaacaacagcaacaacaacagctacaGTATGTGAGCTACTCATCTGTATGTGCTCTAGACAAGTTAGGTTTTATTCTCTGAACACCTCAATTGAACATCCGAACAGTGCGAGGAtatgttttccatgtttttaacACGCTAAATCGATCTGTGCTTTGGGTATGGCTGAATTTGTTGTGACACACTTAACGCATCCTTCAGTTGGTGGCAACATGTGATTGTTCCACTTCAATCTTATTAATTAAGCAGTGTTCAGTGTGATTTAGGAGCAGGAATACAACTGAACTGAGCAGGGAAATCTGTGCATCCATTATGGACCAGATGAACAATGTTTCATGTTTGACAATGtgaaagctttttttcttttgtctttgcgTGGCACAATTTAAGTTAGAGGAGTTTTAGGATGTCAGCTTTTCTGAGGTCTATATGTAGCAGTCAGCGTACACTGCCAACTGTTTTTTAGATTtcgattttaaaataacaaataagcTATGTGAGAGATACAGACTGCACATGTGACTTCacacacatttcaaatgtgCTTGCATCTGAATGAGACACAAGTGGGATGTCTAATAATGTATATGTCATTATATAAATCAAGAATTATCTTTATTTTAGCTAGAATGTTGTAGAGTAGTTAGTAGTACATCAATATTTCATATATGTGTTgggttttttgtgtgcaaatgaGACAATTAATGCAAAAGCTGGAAATTAAATCACTGAAAAACTGAGGCGGAATGTAAAGTTGTTTATATACTGCGAGATTATGATGTGGTGCCAGAtatttttaaactttgtttttctttgttgtatCTCACTGGGCTACATGTGCTGCCTTTAAGTTCTTCTCCTCACTTCCCAATTTTTTATTGGAAAATGTCCAATCTGCATTTCCTCTGGAACATTTCCCACAGTATCTGTCAACATTGCACAACTCTGAAGTCTTTGTGGGGAAGTATTTTCCTCCTTTGTGTGGTTTCAACTAAAATCTGGCCACTGTCGGGCACGTTTTGGGGTGCCAGACTTTCTGAGGTACATTTTGAATAAAAGTCTTGTTCCGTTGTCCATCAAGAAACTGAGATGTTACAGAGTTTGAGAAAAGCACAATAATCACCACAGTGGTTTTGTTGCTCTGCCAGACGAGTGTCCTCTTCTATTCTTTCCTTCAGTTGCCTCAGAATTAATTTCTTCAGATCAATTGTCACTTCAATGATCTTATTAGCAACATCACAAACAAACATTCCTGGGCTTTATGTTGATGTTTATCCTCGATTAGTTTCACGTTAcagtttaaaacattttctgtttttccggAATGTAAATCATAAATAATTATCTCAATTGCACTGCTATAAAATAAGTGAAAGTTTTACCAGTaaaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU142520 lncRNA downstream 27735 19132620 ~ 19134013 (-) True G106128
TU142523 lncRNA downstream 30757 19129286 ~ 19130991 (-) False G106128
TU142463 lncRNA downstream 89006 19072063 ~ 19072742 (-) True G106085
TU142462 lncRNA downstream 90565 19070848 ~ 19071183 (-) True G106084
TU142452 lncRNA downstream 108739 19049374 ~ 19053009 (-) True G106074
TU142574 lncRNA upstream 39059 19214800 ~ 19215918 (-) True G106164
XR_005640452.1 lncRNA upstream 86289 19262030 ~ 19262872 (-) True LOC120566722
XR_005640450.1 lncRNA upstream 87172 19262913 ~ 19265476 (-) True LOC120566720
XR_005640451.1 lncRNA upstream 111335 19287076 ~ 19288469 (-) True LOC120566721
TU142694 lncRNA upstream 137068 19312809 ~ 19314416 (-) True G106243
XM_039814255.1 mRNA downstream 14721 19145238 ~ 19147027 (-) False LOC120567311
XM_039814253.1 mRNA downstream 15007 19145238 ~ 19146741 (-) True LOC120567311
XM_039814252.1 mRNA downstream 15159 19145238 ~ 19146589 (-) False LOC120567311
XM_039814250.1 mRNA downstream 16601 19143709 ~ 19145147 (-) True slc35a4
XM_039813963.1 mRNA downstream 82427 19073982 ~ 19079321 (-) True rbm22
XM_039813820.1 mRNA upstream 506 19176247 ~ 19203101 (-) False pdgfrb
XM_039813819.1 mRNA upstream 506 19176247 ~ 19203101 (-) True pdgfrb
XM_039813325.1 mRNA upstream 43333 19219074 ~ 19250436 (-) False LOC120566717
XM_039813326.1 mRNA upstream 43333 19219074 ~ 19250436 (-) True LOC120566717
XM_039813328.1 mRNA upstream 43333 19219074 ~ 19250436 (-) False LOC120566717
TU142417 other downstream 470338 18687788 ~ 18691410 (-) True LOC120566257
TU142254 other downstream 856053 18303269 ~ 18305695 (-) False reep2
TU142092 other downstream 1169877 17987258 ~ 17991871 (-) False sfxn1
TU142030 other downstream 1366525 17783560 ~ 17795223 (-) False LOC120567448
XR_005640507.1 other downstream 1583937 17522141 ~ 17577811 (-) False nexmifb
TU142573 other upstream 40248 19215989 ~ 19219144 (-) False LOC120566717
TU142773 other upstream 304277 19480018 ~ 19482558 (-) False tlr1
TU142874 other upstream 796674 19972415 ~ 19981133 (-) False fgf18a
TU142968 other upstream 1055167 20230908 ~ 20233924 (-) True G106443
TU143328 other upstream 1952097 21127838 ~ 21130970 (-) True G106728

Expression Profile