RNA id: XM_039814016.1


Basic Information

Item Value
RNA id XM_039814016.1
length 1576
RNA type mRNA
GC content 0.45
exon number 2
gene id LOC120567158
representative True

Chromosome Information

Item Value
chromosome id NC_053121.1
NCBI id CM020918.1
chromosome length 40300294
location 22743607 ~ 22753993 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

AAAATGAGGGGGtgttgaggaggaggggagagtcTGAGAGAAGCAACTTATAATACGGTGAGAGCAGAAGACTGTAGTTAGTACACGGTGAGAGCAGACAGAGTGGGAACAAGAGATTAGAAAGACTTGAAATATATACGCTACCATCAAACAGTCCGTAGAGATGACGTCACTGTGCAGGAACCTGGCTGTGCTTCTCCTTTTTCTGAGTGCCTCACCTCTCCACCACTCCCACCTCTCCACCCATGCTGCCTCTACATTCCCTCCCGCCACTCGTCCTCCGATCATAGTCATGACTGCCTTGGGCTCAGATGATGACTATGACGATTACAGCTCTCCTCCTGAAGACGTGCACGCCGTGACGACTACCTTGCTCCAACGGGAGGCGCAGCCCTGCCAATACAACCCCTGCTTGGAGAATCAGGAGCCCTGCAAACAGATTTCAGCAAAGACTGGGTGTCTCTGTCCTGGAGTCAGCAGGGTTGATGAGCCTCCTCATGCACCAATCATCCAAGCGCTGCAGCCAATCAGTGAAGGAGATGACAGAGGGAAGATCGAGGTCCAGTGGTGTGCTCCATCTTCTGTGCTGTCTGGGTACAGAGTGGTGATAGAGGGAAGTGAATCCCTGGAGTTTGGGGAGGGTTCACGACGAGGTTTGGTCGGATCTTTGGAAGTTGGGACTAAGGTGTGTGTGGAGGCGTGGAACAGTGCAGGACACAGCCCCTCCTCGGAGTTCTCCTGTAAGCGGTATACTCCTCCTGAATCTTCAGAGCATAAACTGTTGGCTGGGGTTATAGGAGGAGGAATGGCCCTCCTACTTCTCATCATAGCAGTTGTGATCCTCTGTAACCATCAAATGCGtaaaaaggcaaagaaagaCTCCGCTGATGGACTAGGGAACCCTTCTTACACAGTGGGGACTATGTGATCCAGATTAGTTTAGTACTGACAATCCATTCCAGTCACACTGAACAGCAACGCTGTAATCAAGAACAAAAGACAAACCGTTGTGGTTCTCATTATGATGATTATAGAATTAAGAAGTTGTTTACACTCCTGTTTCAAGGAATGTGTAAACATATTGGGGTAAAGAGGAGCGGTGTTCATGGAATAACTAATCAATGGGTCATTCTGTTACTTTGTGGTTAGAACTACGGGTTTATTTGCTGGCAAATTAACCTTTGTAGGTTTATTGTAGTGTTATTTCATCTTATCATGGCTAAattttattgtaaatatttttttaggaTATAGATACTGACTTTTGTAATAAACTAAAACTTATTTcataaaaactgtaaattgtGTTTGTTAAATATTTGCTTTTATCTGAAAGGTTTAGGCTTACGTGTTGTAACATAAACCAGGGAGACAAATTAATGAAGGTTGGTAGGTGTACGGCACGCTTTAATGTGCCTTGGCATTGAGTCTCTGAAGCTTAACTGAAGGGACTGAACAACGGTCAGTCCAAAATGTTCCATGCTTGGGTTGAGATCTGTTGACTGCAGAGTCCATTGCATATGattgtcacattttttttaacattaaaacattaattgACCCCTTGTACGCTGTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_005640528.1 lncRNA upstream 26049 22723025 ~ 22725653 (+) True LOC120567160
TU143870 lncRNA upstream 120332 22631079 ~ 22631370 (+) True G107073
TU143843 lncRNA upstream 336367 22415002 ~ 22415335 (+) True G107050
XR_005640407.1 lncRNA upstream 354651 22390353 ~ 22397051 (+) True LOC120566464
TU143816 lncRNA upstream 373362 22331012 ~ 22378340 (+) False G107025
TU143967 lncRNA downstream 69608 22823601 ~ 22823862 (+) True G107149
TU143988 lncRNA downstream 102662 22856655 ~ 22856868 (+) True G107161
TU143991 lncRNA downstream 111975 22865968 ~ 22866201 (+) True G107164
TU143993 lncRNA downstream 113086 22867079 ~ 22874836 (+) False LOC120566955
XR_005640493.1 lncRNA downstream 113479 22867472 ~ 22875098 (+) True LOC120566955
XM_039813163.1 mRNA upstream 46681 22685286 ~ 22705021 (+) True f8
XM_039813063.1 mRNA upstream 67530 22664890 ~ 22684172 (+) True zgc:152774
XM_039814406.1 mRNA upstream 91452 22650018 ~ 22660250 (+) False pmt
XM_039814405.1 mRNA upstream 91452 22650378 ~ 22660250 (+) True pmt
XM_039813359.1 mRNA upstream 148431 22488618 ~ 22603271 (+) False mid2
XM_039814019.1 mRNA downstream 648 22754641 ~ 22762526 (+) False si:dkey-34l15.1
XM_039814018.1 mRNA downstream 6166 22760159 ~ 22762526 (+) True si:dkey-34l15.1
XM_039814013.1 mRNA downstream 8492 22762485 ~ 22770301 (+) False zgc:195212
XM_039814011.1 mRNA downstream 8524 22762517 ~ 22770301 (+) False zgc:195212
XM_039814010.1 mRNA downstream 9335 22763328 ~ 22770301 (+) True zgc:195212
XR_005640584.1 other upstream 1290252 21448804 ~ 21461450 (+) False stx3a
TU143018 other upstream 2399535 20351721 ~ 20352167 (+) True G106465
XR_005640374.1 other upstream 2690364 20043031 ~ 20061338 (+) False LOC120566323
TU142686 other upstream 3145929 19604840 ~ 19605773 (+) False G106237
TU142049 other upstream 4858172 17890967 ~ 17893530 (+) False gabra6a
TU143990 other downstream 108197 22862190 ~ 22865676 (+) True G107163
TU143997 other downstream 200979 22954972 ~ 22973761 (+) True G107168
TU144145 other downstream 504278 23258271 ~ 23262229 (+) False tgfb5
TU144214 other downstream 514798 23268791 ~ 23270216 (+) True G107333
TU144280 other downstream 700574 23454567 ~ 23466184 (+) False ubl3b

Expression Profile