RNA id: XM_039814027.1


Basic Information

Item Value
RNA id XM_039814027.1
length 3021
RNA type mRNA
GC content 0.51
exon number 17
gene id LOC120567165
representative False

Chromosome Information

Item Value
chromosome id NC_053121.1
NCBI id CM020918.1
chromosome length 40300294
location 22794685 ~ 22805823 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

ATTACGTGCTCCAGTAAAAGTGTATCTATACCTTCCAGTCGCCCCTCCCAGCAGAAGGCGCTCCCTGGTGGTCTTGTCTGTGACTTCAGGAAAACATCCCCTCCCATACGGAAAATCATAAAGTAGGGGATCAAATGTAGGACAGAAGGGACGAGAGCATGGTCTGAATCGAGggatgtttttttatatcataGCTGGCTGATgattcattttgtgtgtgctggAGTTTGAGCTCGCGGATGCTGCGAGGGGACTGACTCGTGCTGAGATGCGAATGACAGGCCAAACCTATCAAGCATCCTCCTGTATCGTGAATGGAGCCCGAAGCTAAATAGCTGAAAGACGATAAATCGGAAAAAGAGAGCCACAAGCCAGTTTGATCCAGTCTGTATAACGGGGACCGCACCGGCTGTGTGAGGAGGAGTGGCGGCGGCGGCGGTGGcggcggcggcagcagcagggacATGTTCTGAGCGGAGAGCCGGCGAGCGGCGGCGGCTGGCGGGATGAAGGCGCCGAGGAGACCGAGGCAGACGCGGCTCCTCCCCCGGTTCTGCGTCTGTGGAGTCGGTCTGCTCGCAGCCGCCTGGATCTTTAACTTCAACGATGTTACAGGTTCTAATGCACCCACTGTGGATCATGACATCTCCTTGTCAAAGAAAGAGCTCATGCAGcaagaaaaagacaacaatgaaaATGACAGTATTTCTAGATCCGCTATCAGTGATTTTCCTGAAGACCTCTTCACTCTGGAGCAGAAGAGACAGGGAGCGGTAGTCCTTCAtgttctctgtGCGATCTACATGTTTCATGCACTGGCCATCGTGTGTGATGTTTACTTTGTGCCATCACTGGAAAAAGTATCAGAGAACCTTCAGCTCAGTCAGGATGTTGCCGGGGCAACCTTCATGGCAGCTGGGAGCTCCGCCCCCGAGCTCTTCacctctctgattgGGGTGTTTATCACAAAAGGAGACGTGGGTGTGGGAACTATTGTGGGATCAGCTGTCTTTAACATCCTGGTCATCATCGGCCTCTGCGGCATCTTTTCTGGACAGACCATCTCTCTGAGCTGGTGGCCTTTGTTTCGTGATGCTGCCTTCTACATCCTGTCCATACTGGTGCTTATCCTGGTGATCTATGATGAAAAAGTATTGTGGTGGGAGACCATCATCCTGATCTCTATGTACGGAATCTACATAATCATCATGAAGTTTAACAGATCTCTGCGGAGCCTGGCAGAGAGACACTGCAGCAGGGCAGGTCAGCCATGTCTGAGCCGCCTGCGACGGACGACTGCTGTCGGAAACATTGGAGACTGTGACAACGACATGGTGCCGCTGAAGCCAGATTCTTGTGCGGTGGCCGGCCAGGACTCAGGGGTGGTGATGGTGGATGAGCTGCTGAACCTGCACCCCCACCAGCTCTCCTTCTCAGAGAGGCAGAGGCTGATTTGGGCCCGGGGTGGCCCAGAGGAAGGGGGAGCTTCGGGCGAGGAAGGTTCGGGTGCTAACGGATCGTGGGGGAGGGAGAACAGGACGGTGGCCGAGGGAGACAAGCAGCCactggagggagagagggagaggggtaAAGAGACCGGGGAAGAGACAGGTGGGGTAGCACATcctgaagaggaagaggaggaagagcaggaggaaggagaggaggagaacaCTCCTTTCAAACCCTTCGTCCTGCCACATGGTTGGTGTGTGCGTCTGAAGTGGCTGCTCTCTTGGCCCGTGAGCGTCCTACTCTACTTCACCATCCCCGACTGTAACCTGCCGCGGTGGGAGCGCTGGTACCTGCTCACCTTCCTGTCCTCCACACTCTGGATAGCCCTATTCTCCTACCTCATGGTCTGGATGGTGACCATAATCAGCTACACACTTGGAATCCCAGAAGTCATCATGGGCATTACTTTTCTGGCAGCCGGCACCAGTGTCCCTGACTGCATGGCCAGCCTCATCGTTGCTCGACaagGGATGGGCGACATGGCTGTTTCCAACTCCATTGGCAGTAATATCTTTGATGTGCTTCTGGGCCTGGGCTTCCCCTGGGCCCTGAGGACTCTCATTGTCAGCTACGGATCAGTGGTGACAATTAACAGCAGAGGCCTGGTGTACTCAGTGATTCTTCTGTTGGCCTCAGTCATACTCACTGTCCTGTGTGTCCATCTGAACTGCTGGAGGTTGGACCGCAGACTGGGACTCTGTCTCATACTTCTCTACGCCATCTTCCTCCTCTGCTCCATCGGCTTCGAGAGTTTGTAGAGGACATGCACACTCCCTGTACACGTGCACGCAGAGTCATGGCCCGACTTGTTTTCCACATTCAGTGCTGCCGTTATTCGTTAAATGTACAGACCGATGAATTTTCATTTCACTTTAAGGGTGGCTGTACATGTTTAAGCAGCGTTACTTCAACACCGGCTGCCTGAAAGCTacattgtttacctttgataAACGAGTATTTTACATAGTTTTGTACCGAGCACCTCCAGCCCAGATTTTGTGAAATCAGACCCAACTGATTATGCACTATGTTTCACAACAAATTTAGAAAGTATTGAATTTCTATTCTGAAACAAAGAATATTGTATAAGGAATCCTAAAGTCGGTTCATTTACTTATTAATACTTTATGACTGCCACGAGTAACGTCAATGACCAGATGATTACACATGTAAGTTTATATAGATTGCTTCTCATtgtgtaaagttattttatgtacatttttatGTCAAGTTTTCATCACGCCTTTGTATCTGTAGTTGCAAACAGCAAAGCATGGCTGATCATCACGCTGCAGTTAATTGCACTGAGCCACTGTTGTCTTGGCCTTGTACATAAcgtaacacccccccccccctctttatTCCAAACTTGTCAGCACAGAGGTGGTGATTTTGTGCTGGAATAAGGCGACTGTATGCTACAAGGTGTTTATGAATGTCTGTGTTTGGAGAGAGATGTTGAGTGTATGTTGTTAagttcaataaaatgttttgttctGTGAGGTT

Function

GO:

id name namespace
GO:0055085 transmembrane transport biological_process
GO:0016021 integral component of membrane cellular_component

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_005640528.1 lncRNA upstream 69032 22723025 ~ 22725653 (+) True LOC120567160
TU143870 lncRNA upstream 163315 22631079 ~ 22631370 (+) True G107073
TU143843 lncRNA upstream 379350 22415002 ~ 22415335 (+) True G107050
XR_005640407.1 lncRNA upstream 397634 22390353 ~ 22397051 (+) True LOC120566464
TU143816 lncRNA upstream 416345 22331012 ~ 22378340 (+) False G107025
TU143967 lncRNA downstream 17778 22823601 ~ 22823862 (+) True G107149
TU143988 lncRNA downstream 50832 22856655 ~ 22856868 (+) True G107161
TU143991 lncRNA downstream 60145 22865968 ~ 22866201 (+) True G107164
TU143993 lncRNA downstream 61256 22867079 ~ 22874836 (+) False LOC120566955
XR_005640493.1 lncRNA downstream 61649 22867472 ~ 22875098 (+) True LOC120566955
XM_039814029.1 mRNA upstream 477 22789614 ~ 22794208 (+) False LOC120567166
XM_039814028.1 mRNA upstream 477 22789616 ~ 22794208 (+) True LOC120567166
XM_039814024.1 mRNA upstream 5966 22784610 ~ 22788719 (+) True zdhhc24
XM_039814023.1 mRNA upstream 16521 22770570 ~ 22778164 (+) True pola2
XM_039814012.1 mRNA upstream 24384 22763331 ~ 22770301 (+) False zgc:195212
XM_039814407.1 mRNA downstream 9319 22815142 ~ 22823030 (+) True LOC120567435
XM_039813679.1 mRNA downstream 41295 22847118 ~ 22855701 (+) False LOC120566951
XM_039813678.1 mRNA downstream 41295 22847118 ~ 22855701 (+) True LOC120566951
XM_039813680.1 mRNA downstream 41295 22847118 ~ 22855701 (+) False LOC120566951
XM_039813681.1 mRNA downstream 41295 22847118 ~ 22855701 (+) False LOC120566951
XR_005640584.1 other upstream 1333235 21448804 ~ 21461450 (+) False stx3a
TU143018 other upstream 2442518 20351721 ~ 20352167 (+) True G106465
XR_005640374.1 other upstream 2733347 20043031 ~ 20061338 (+) False LOC120566323
TU142686 other upstream 3188912 19604840 ~ 19605773 (+) False G106237
TU142049 other upstream 4901155 17890967 ~ 17893530 (+) False gabra6a
TU143990 other downstream 56367 22862190 ~ 22865676 (+) True G107163
TU143997 other downstream 149149 22954972 ~ 22973761 (+) True G107168
TU144145 other downstream 452448 23258271 ~ 23262229 (+) False tgfb5
TU144214 other downstream 462968 23268791 ~ 23270216 (+) True G107333
TU144280 other downstream 648744 23454567 ~ 23466184 (+) False ubl3b

Expression Profile