RNA id: XM_039814142.1


Basic Information

Item Value
RNA id XM_039814142.1
length 4277
RNA type mRNA
GC content 0.40
exon number 2
gene id LOC120567230
representative True

Chromosome Information

Item Value
chromosome id NC_053121.1
NCBI id CM020918.1
chromosome length 40300294
location 20089540 ~ 20145603 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GAAACCAAAGGAAATATCGTCCCTCCCCTCATAAAGCTTTTGTTTGCTTtctgaaaaaagcagaaaaggcATTTGAATGGAGCTCGCCACCAGACGGAATAGTTTTGTGCTTTTTGTAAATATGAACTCAAAGCCGGTTTGATATAGACATTTATTGCAGTGACGTTTTTGTGTATTAATGTGTTGTTGGATAACAATGGTGATTGAAAGGCCAACTCGAAGAAGGGTCTGCTCATGGTTTGCTTTTCATTTGGCTCTACTGTTGTTCGTCGGAATACGGGGTTTGGCAGAAATAAGATACTCTATTCCAGAGGAAGTAAAAGATGGAACTGCTGTTGGAAATGTTGCGAAGGATCTTGGCCTTGATATCACCTCTTTGATTGACCGACGATTCCGCGTTGTTTCTGAATCTAAGGATGCATTTTTTGAGGTAAACCAGAACAATGGGGCTCTGTACGTCCATAAGAAAATCGACAGAgaggagctctgtcagggcagcggtgccTGCGTAATGGAGCTAAAAGTGATAGTCGAAAACCCGTTGGAAATACACTATGTAATTGTAGAAATTACTGATGTAAATGATCACTCTCCTAGTTTTCCAGAGAAAGAAcaaatatttgaaatatttgAACAAACACTACCAGGAAGGCGATTTCAACTGCACACTGCTCGTGACCCCGATGCTGGAATTAACTCTATTCGTACGTACACTTTGACGTCTAATGAACATTTTGAAGTAGATATCCGTCAAAGCGATGAGGATAAAATACCGTTTTTAGTGCTGAAGAAATCGTTAGACAGAGAACAaaaggacaaacacacactactgGTTACAGCAGTTGATGGAGGCAAACCTCCAAGATCAGGGACACTAAATGTTTCCATTATTGTTCTTGACAGTAATGATAACCGTCCGATATTTAGTCAGGAGATTTATCAAAttgcaataaaagaaaatgttccaGTCGGTACTTCAATATTTCAAATTAATGCGACAGATCCCGATGAAGGCACCAATAGCGAAATTGAATACAGCCTCGGAAAAACTCTTAAGAAAAAAGTCTATGACATTTTTGAATTGGACAAATTAACCGGAGAGATTAGAGTTAAAGGAGCAGTGGACTATGAAGAAAACGACGTTTATAAACTGGATGTTGAGGCATCCGATAAAGGAACACCTCCACTGACCGGTGAGTGTAGAGTCATTATAAAGATAAAAGACGTTAATGATAATCCACCGGAAATAGAAGTGACATCACTGTCAAATACAGTGTCTGAAGACTCAAAACCTGGCACAATGATTTCTCTTATCAGTTTCAAGGATAAAGACTCTGGTGTCAATGGAAAAATAATATCGAGCATAACGTCAGACGTGCCATTTGAATTAAAGCCCTCCTATAAGGAGAACATTTATTCAGTTGTCACGAAGGGATTTTTGGATCGAGAGGAGGTGTCACATTatgaaataacaataaaagcCACCGATTGTGGTGAACCTCCCTTATCTACTGTTAAAACTCTCAACATCCAGATATCAGATGTAAATGACAACAGTCCACATTTCGACCAAAATCCAATACAGTTTTATCTGGTAGAAAATAATGTTGCTGGAAATTCAATATTTTCTGTAAGCGCAACAGACAATGATTTGAATGACAATGCAGTTATTTCATACCATATAGTGAGAGGAGGGAATCAAAATGACATAATGTCTTTTCTCAACATAAACTCTGAAACTGGAGACATTTTGGCACTAAAAAGTTTTGATTTTGAAACACTGAAGACTTTCCAGTTCCAAGTTGTTGCCACAGATTCTGGAACTCCGTCACTAAGCAGCAACGTCACAGTGAACGTGTTCATTCTGGATCAGAACGACAACGCTCCAGTCATCCTATATCCAGTCAGCTCTAACGGTTCTGCTGAAGGTGTGGAGGAGATTCCCCGCAATGTGAACGCAGGACACTTGGTGACTAAAGTCAGAGCCTATGACGCTGATATAGGATATAACGGCTGGTTActgttttcactgcaggacgTTACTGACCACAGTCTCTTTGGTTTGGACCGCTATACAGGACAGATCAGAACACTTCGCTCATTCACAGAGACAGACGAGGCTGAGCATAAACTGGTCATACTGGTGAAAGACAATGGGAACGTTTCACTCTCAGCAACAGCTACTGTGCTTGTCAAAGTTGTGGAGCCCAAAGAGGCTTTTGCTGCTTCTGATGTTAAAAGTGCAACAAAGGATGAGGAGGACAATAATGTGACTTTTTACCTGATGATAACTTTGGGCTCCGtttcaacactttttctcaTCAGTATCATCGTGCTGATTGCAATGCAGTGCTCCAAAACCACAGActatacttctaaatatctacaagAGACTAATTATGATGGGACACTGTGTCACAGCATCCAGTACAGATCTGGAGACAAACGGTACATGCTAGTAGGACCCAGAATGAGTATAGGATCTACTATAGTCCCGGGCAGCCATGCAAACACACTAGTGCTCCCTGACAGGAGAGGGACATCTGGAGAGAGGTCAGAACAGATGTAGGTCTGCACTGCACTTGGCATCTGTATGAGCTACAGCCACAACATCTGCTGCTGTGCTTAGGTCATCACTGCATGCCTGGAGGATTGAACTGACTGAGCGGGCAGCGCAAGGCTACATGCAAGACAGACAGCTATTAAGTGGAAAACAAGTGAAGACACAGTTGGTTGAAAATCCCCTTTAAGGTCACCCTGTTGCCTAAAAGCGCCCAGTGATCTAGATTTAATGGGATGGGGTTGTGATCTCTGATTGATAGAATGTGTGGGTGAGGAAAATCCAGAGTCAGCTGTTTAGACATTGGATGCAGTCATAGTAAGAGGATTGCCTTCTTACAGCAATACATCTGCACTGCTCACTGTGGAGTAGACGGGGTATAAGGCCACAGTTGCCATACACTTGTCTGATTAAATACCGTATGTTGTATTAATTTCTGGCCATGCATGGATGGGATCAGATGTTGGCTGTTAGATGGATCCAGTCTCTAGCTGAAGGGTTCCTCTCCCCCCTGTGGTTATTTGCCACTGTCATATCCCCACTAAGCATCTTGGGTAATTACTATGCCTTTATTTAGCAATTGCATTCTTATTTCTCTGGATGTTCCCTGTGTGGGTATTCACAACAAGAACGTTCTATAGTCAAGCTTATGTGTGTTTATGACTTCTTTAATGTTGCTACACCACAGTATTGATAActtgtcattttcttttaatgcttttttacATGGTTAGCAGGAGTGCAAGTAGAATTCCACTAGAATGTGTGCGTCtgttcagttacaaggctgtaactaaaacaacattgtctgaaaaataatacagaaaaaactttgtatatatgtgtgagtATGTTTCATTAATTGTATATTGAGTTCATTGAGTGGTCTGGTCAAACTGGACATAACCTTCCTTTGTGATCTAATCGTGATATTTGTGTCATGCAAAAAGCATATTGTCACTGTGTTTATTTCATAATTTAACTTTAGTAGTATTGCATGGCCCTCTAGGAAGATTTTGCATCTCTTGAACTGTAAGGCATTTTCAAAAAAGCAATTAGGTCAGCtcagacaaacaaacagtaaattattttttcttttttcttaaaagTTCAAATGTTGAAGGTGCGAGTTTTCACCAGACGTCAGTGATAGATTAAACAGCCTTTTTCTAAAAGCATGAAAATGTGGTCAGAATTGTATCATAAAGACATATAAATCATTCACTGTCCTGATATCAAGCGTGTGTGATGCCACTGACTGTAGATAGAGAAAACGCCTGTTTTAACACTTATTAAAGCTACATGTACAGGCTGAAACGTCTTATCCactttcttcttatttttaaaATGGCCCGACCGTCATTTGGCTCCTTCTGGTCATCCCTGAGAGTGTGAACCAGTGAGCTGTTCTGTACAGTGGGTGAGTCATCTCatcccacatgtagattttcattttgtgaagttggtctgctgtgttttatttttaggtGAACCATCTGTAATGGAAACATGAAATCAGGATTCATGGTCTTTGGCATTCATGGTTATTGCTATTATTCCATCATGATATTAGGGAGATTTGGTTATGTGATGCCCTGTAGCAAAACAGACTTGAGTTGTGTGCATGCTTGTTTAGATGTGTACTGATCGCTAAATGTTCTTCCATGTTTCCCGCCATCTTAGTGGGTGCAGTCTATgaataaaacaatgaaacatG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_005640570.1 lncRNA upstream 90739 19973785 ~ 19998801 (+) True LOC120567444
XR_005640569.1 lncRNA upstream 90739 19973785 ~ 19998801 (+) False LOC120567444
XR_005640458.1 lncRNA upstream 134577 19950757 ~ 19954963 (+) True LOC120566743
TU142833 lncRNA upstream 147825 19940938 ~ 19941715 (+) True G106351
XR_005640411.1 lncRNA upstream 241262 19844839 ~ 19848278 (+) True LOC120566488
XR_005640536.1 lncRNA downstream 128230 20273833 ~ 20275911 (+) True LOC120567249
TU143143 lncRNA downstream 564906 20710509 ~ 20731673 (+) True G106577
TU143189 lncRNA downstream 801227 20946830 ~ 20947415 (+) False hrh2a
TU143269 lncRNA downstream 954881 21100484 ~ 21100835 (+) True G106679
TU143274 lncRNA downstream 961895 21107498 ~ 21108359 (+) True G106684
XM_039813058.1 mRNA upstream 4333 20082373 ~ 20085207 (+) True LOC120566533
XM_039813057.1 mRNA upstream 11171 20075753 ~ 20078369 (+) True LOC120566532
XM_039813056.1 mRNA upstream 14565 20072355 ~ 20074975 (+) True LOC120566530
XM_039814144.1 mRNA upstream 18483 20068463 ~ 20071057 (+) True LOC120567232
XM_039813055.1 mRNA upstream 21975 20064986 ~ 20067565 (+) True LOC120566529
XM_039814063.1 mRNA downstream 9050 20154653 ~ 20256413 (+) False LOC120567189
XM_039814137.1 mRNA downstream 15977 20161580 ~ 20164367 (+) True LOC120567223
XM_039814141.1 mRNA downstream 19245 20164848 ~ 20167665 (+) True LOC120567228
XM_039814143.1 mRNA downstream 22661 20168264 ~ 20171057 (+) True LOC120567231
XM_039814138.1 mRNA downstream 25972 20171575 ~ 20174355 (+) True LOC120567224
XR_005640374.1 other upstream 28202 20043031 ~ 20061338 (+) False LOC120566323
TU142686 other upstream 483767 19604840 ~ 19605773 (+) False G106237
TU142049 other upstream 2196010 17890967 ~ 17893530 (+) False gabra6a
TU141898 other upstream 2403841 17682919 ~ 17685699 (+) True G105677
TU141805 other upstream 2729279 17357929 ~ 17360261 (+) False LOC120566324
TU143018 other downstream 206118 20351721 ~ 20352167 (+) True G106465
XR_005640584.1 other downstream 1303201 21448804 ~ 21461450 (+) False stx3a
TU143990 other downstream 2716587 22862190 ~ 22865676 (+) True G107163
TU143997 other downstream 2809369 22954972 ~ 22973761 (+) True G107168
TU144145 other downstream 3112668 23258271 ~ 23262229 (+) False tgfb5

Expression Profile