RNA id: XM_039814146.1


Basic Information

Item Value
RNA id XM_039814146.1
length 4335
RNA type mRNA
GC content 0.41
exon number 2
gene id LOC120567236
representative True

Chromosome Information

Item Value
chromosome id NC_053121.1
NCBI id CM020918.1
chromosome length 40300294
location 20114922 ~ 20145603 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

AGTTTAGTGATTCTGTGCATCTGGCAGCACTTTACGTCACGAGCTTTATTTGGAGCGAGCCCTTGCATTTTACTCAAACAGCATACTTGAGCGCAAAATCGCTATTGGCAGCAGCCATTGTTTCATTTTCAGCcgttttgtaaaaaaacaaaaaacaaaacagacgtCGGTCATTCAGAAACATAGCGGATTAAGTTTAATTTATATAACGACGTAGTTAAAGGACTGTTCTTTATCGCCTTCGGGTCATGGAACAAAGAGGACGCAAAGCATGGAGGGAGCTACAGTTTTGGTTTGCCTTCATGCTTATTCTGGATATTATATGGAGCGGAGCTTCTGCACAGATCAGATATTCAGTATCGGAGGAGGTTCAAGATGAAACCGTCGTAGGGAATATAGCTAAGGATTTGGGGCTAGATAAGAGTACACTAAAGGACAGAGGATATCGCATTGTAGCAGGCTCAACTGAACCCCTGTTTCAAGTGAATCAAGATAACGGTATATTGTATGTGAAAAGAAGAATAGACAGAGAGGAGGTGTGCGAACGGACAAGCCCATGTTTGATCAATCTGAAAACCGTGCTAGAAAACCCGCTGGAAATCCATTACGTGGCAGTGGAAATACTGGATATAAATGATCACTCGCCTGTTTTtccagagaaagagaagaggctTGAGATCTCTGAGTCGGCCTTACCAGGAGCGAGATTTCAACTACAAGCTGCGCGCGACCCCGACGTAAGCCAGTTCTCCATTCAGCAATATAGGCTCAGCCATAACGAATATTTTAGATTAGAAGTGAAGGATAGAGGCGAGGACCGTAAAGTACCATTTTTAGTTCTGCAGAAGCAGTTAGATAGAGAAACAGTGGGAAGACTTAAGCTACATCTAACAGCCGTTGATGGAGGAAAACCAGTGAAGTCTGGCGCTATAGAAATTATTGTGGATGTACTTGATGTTAATGACAACTCCCCGGTGTTTACCAAAGAGTTTTATTCTGCCACACTCAAAGAAAACGTTCCCGTTGGCACTGTGGTGATACAGGTAAATGCAACCGATTTGGACGAGGGTGCAAATAGTGAAATTATATATTCATTTGGTAACGAAGTTGATACAAAATTAATGGATGTCTTTAGTATAGACGAAAACACTGGTGAAATTAAAGTAACCGGTAAGATAGACTTCGAGGAAAGTAAAAGTTATGAAATTGACATTCAGGCGTCCGATAAGGGACCAGTTCCTCTAACAACAGACAAAAGCGTTATGATAAATATTATTGATGTTAATGATAATGCACCTGAGATAGAAGTGACATCATTTTCTAGCTCTATCAAGGAGGATTCAAAGATAGGAACTACAGTGGCTCTGATTAGTGTCAGTGATTTAGACTCTGGAATCAATGGTAAAGTCATTTGCACAATCAGAGAAGAAGTGCCTTTTACTTTATCTCCATCATTACAAGAAAACATGTACGCTGTTGTAACCAGGTCACAGTTGGACAGGGAAAATGTTTCCCAATTTGATGTCACAATTATTGCGAAAGACACAGGTGATCCGTTATTTTCAACTGAAAAGACCATAAGCGTCGTAGTATCAGATGTAAATGACAACAGTCCAGAGTTTTCATCAAGACCCTATGTATTTTATATTACCGAGAACAACAGCCCCGGAGCAACAGTATTTTCAGTAAAAGCTTCTGATCGTGATGAAAGTGATAACGCTCTCATTTCATATCATATTTTCAGAGAAACAAGTGGGGATAATACATTGATCTCATTGTTAAATATCAACTCTGAAACTGGAGATATTTTGGCGCTAAAAAGTTTTGACTTTGAAACACTGAAGACATTCCAGTTCCAAGTTGTTGCCTCAGATTCTGGAACTCCGTCACTAAGCAGCAACGTCACAGTGAACGTGTTCATTCTGGATCAGAACGACAACGCTCCAGTCATCCTGTATCCAGTCAGCTCTAACGGTTCTGCTGAAGGTGTGGAGGAGATTCCCCGCAATGTGAACGCAGGACACTTGGTGACTAAAGTCAGAGCCTATGACGCTGATATAGGATATAACGGCTGGTTActgttttcactgcaggacgTTACTGACCACAGTCTCTTTGGTTTGGACCGCTATACAGGACAGATCAGAACACTTCGCTCATTCACAGAGACAGACGAGGCTGAGCATAAACTGGTCATACTGGTGAAAGACAATGGGAACGTTTCACTCTCAGCAACAGCTACTGTGCTTGTCAAAGTTGTGGAGCCCAAAGAGGCTTTTGCTGCTTCTGATGTTAAAAGTGCAACaaaggatgaggaggagaataATGTGACTTTTTACCTGATGATAACTTTGGGCTCagtttcaacactttttctcaTCAGTATCATCGTGCTGATTGCAATGCAGTGCTCCAAAACCACAGActatacttctaaatatctacaagAGACTAATTATGATGGGACACTGTGTCACAGCATCCAGTACAGATCTGGAGACAAACGGTACATGCTAGTAGGACCCAGAATGAGTATAGGATCTACTATAGTCCCGGGCAGCCATGCGAATACACTAGTGCTCCCTGACAGGAGAGGGGCATCTGGAGAGAGGTCAGAACAGATGTAGGTCTGCACTGCACTTGGCATCTGTATGAGCTACAGCCACAACATCTGCTGCTGTGCTTAGGTCATCACTGCATGCCTGGAGGATTGAACTGACTGAGCGGGCAGCGCAAGGCTACATGCAAGACAGACAGCTATTAAGTGGAAAACAAGTGAAGACACAGTTGGTTGAAAATCCCCTTTAAGGTCACCCTGTTGCCTAAAAGCGCCCAGTGATCTAGATTTAATGGGATGGGGTTGTGATCTCTGATTGATAGAATGTGTGGGTGAGGAAAATCCAGAGTCAGCTGTTTAGACATTGGATGCAGTCATAGTAAGAGGATTGCCTTCTTACAGCAATACATCTGCACTGCTCACTGTGGAGTAGACGGGGTATAAGGCCACAGTTGCCATACACTTGTCTGATTAAATACCGTATGTTGTATTAATTTCTGGCCATGCATGGATGGGATCAGATGTTGGCTGTTAGATGGATCCAGTCTCTAGCTGAAGGGTTCCTCTCCCCCCTGTGGTTATTTGCCACTGTCATATCCCCACTAAGCATCTTGGGTAATTACTATGCCTTTATTTAGCAATTGCATTCTTATTTCTCTGGATGTTCCCTGTGTGGGTATTCACAACAAGAACGTTCTATAGTCAAGCTTATGTGTGTTTATGACTTCTTTAATGTTGCTACACCACAGTATTGATAActtgtcattttcttttaatgcttttttacATGGTTAGCAGGAGTGCAAGTAGAATTCCACTAGAATGTGTGCGTCtgttcagttacaaggctgtaactaaaacaacattgtctgaaaaataatacagaaaaaactttgtatatatgtgtgagtATGTTTCATTAATTGTATATTGAGTTCATTGAGTGGTCTGGTCAAACTGGACATAACCTTCCTTTGTGATCTAATCGTGATATTTGTGTCATGCAAAAAGCATATTGTCACTGTGTTTATTTCATAATTTAACTTTAGTAGTATTGCATGGCCCTCTAGGAAGATTTTGCATCTCTTGAACTGTAAGGCATTTTCAAAAAAGCAATTAGGTCAGCtcagacaaacaaacagtaaattattttttcttttttcttaaaagTTCAAATGTTGAAGGTGCGAGTTTTCACCAGACGTCAGTGATAGATTAAACAGCCTTTTTCTAAAAGCATGAAAATGTGGTCAGAATTGTATCATAAAGACATATAAATCATTCACTGTCCTGATATCAAGCGTGTGTGATGCCACTGACTGTAGATAGAGAAAACGCCTGTTTTAACACTTATTAAAGCTACATGTACAGGCTGAAACGTCTTATCCactttcttcttatttttaaaATGGCCCGACCGTCATTTGGCTCCTTCTGGTCATCCCTGAGAGTGTGAACCAGTGAGCTGTTCTGTACAGTGGGTGAGTCATCTCatcccacatgtagattttcattttgtgaagttggtctgctgtgttttatttttaggtGAACCATCTGTAATGGAAACATGAAATCAGGATTCATGGTCTTTGGCATTCATGGTTATTGCTATTATTCCATCATGATATTAGGGAGATTTGGTTATGTGATGCCCTGTAGCAAAACAGACTTGAGTTGTGTGCATGCTTGTTTAGATGTGTACTGATCGCTAAATGTTCTTCCATGTTTCCCGCCATCTTAGTGGGTGCAGTCTATgaataaaacaatgaaacatG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_005640570.1 lncRNA upstream 116121 19973785 ~ 19998801 (+) True LOC120567444
XR_005640569.1 lncRNA upstream 116121 19973785 ~ 19998801 (+) False LOC120567444
XR_005640458.1 lncRNA upstream 159959 19950757 ~ 19954963 (+) True LOC120566743
TU142833 lncRNA upstream 173207 19940938 ~ 19941715 (+) True G106351
XR_005640411.1 lncRNA upstream 266644 19844839 ~ 19848278 (+) True LOC120566488
XR_005640536.1 lncRNA downstream 128230 20273833 ~ 20275911 (+) True LOC120567249
TU143143 lncRNA downstream 564906 20710509 ~ 20731673 (+) True G106577
TU143189 lncRNA downstream 801227 20946830 ~ 20947415 (+) False hrh2a
TU143269 lncRNA downstream 954881 21100484 ~ 21100835 (+) True G106679
TU143274 lncRNA downstream 961895 21107498 ~ 21108359 (+) True G106684
XM_039814147.1 mRNA upstream 6460 20105923 ~ 20108462 (+) True LOC120567239
XM_039814149.1 mRNA upstream 12825 20099593 ~ 20102097 (+) True LOC120567243
XM_039814148.1 mRNA upstream 16343 20096016 ~ 20098579 (+) True LOC120567242
XM_039813058.1 mRNA upstream 29715 20082373 ~ 20085207 (+) True LOC120566533
XM_039813057.1 mRNA upstream 36553 20075753 ~ 20078369 (+) True LOC120566532
XM_039814063.1 mRNA downstream 9050 20154653 ~ 20256413 (+) False LOC120567189
XM_039814137.1 mRNA downstream 15977 20161580 ~ 20164367 (+) True LOC120567223
XM_039814141.1 mRNA downstream 19245 20164848 ~ 20167665 (+) True LOC120567228
XM_039814143.1 mRNA downstream 22661 20168264 ~ 20171057 (+) True LOC120567231
XM_039814138.1 mRNA downstream 25972 20171575 ~ 20174355 (+) True LOC120567224
XR_005640374.1 other upstream 53584 20043031 ~ 20061338 (+) False LOC120566323
TU142686 other upstream 509149 19604840 ~ 19605773 (+) False G106237
TU142049 other upstream 2221392 17890967 ~ 17893530 (+) False gabra6a
TU141898 other upstream 2429223 17682919 ~ 17685699 (+) True G105677
TU141805 other upstream 2754661 17357929 ~ 17360261 (+) False LOC120566324
TU143018 other downstream 206118 20351721 ~ 20352167 (+) True G106465
XR_005640584.1 other downstream 1303201 21448804 ~ 21461450 (+) False stx3a
TU143990 other downstream 2716587 22862190 ~ 22865676 (+) True G107163
TU143997 other downstream 2809369 22954972 ~ 22973761 (+) True G107168
TU144145 other downstream 3112668 23258271 ~ 23262229 (+) False tgfb5

Expression Profile