RNA id: XM_039814148.1


Basic Information

Item Value
RNA id XM_039814148.1
length 2564
RNA type mRNA
GC content 0.42
exon number 1
gene id LOC120567242
representative True

Chromosome Information

Item Value
chromosome id NC_053121.1
NCBI id CM020918.1
chromosome length 40300294
location 20096016 ~ 20098579 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GGGTCTCTGGGACTGCCTCTGAAGCATTCAGAAGGGCAGACCATTTTCCTCCGAATGTAATTTGTTCCAACGATTTTGTCGTCTAGACAAACCGAGCGCATTATAAGACGGTGGTTTTTGTTCTCAATTAATGGATATGTAAACAGTCTGTAGATCACTTGGTATTTACTGGATTTATCAACTGTCCATAAGCAATGGAACAAAGCGGAACGGACTCCTGGCGACAAGAAAGCAAATGGGTGGTCCTCGTGCTGGCTTTTAATTTGATTTTCGGCAATGCATCTGGACAGATAAGATATTCTATATCGGAAGAGATCAAAGAGGGGACTGCTGTTGGGAATATAGCAAAGGATCTGGGAATAGATTCTAATATATTAAAAGCAAGGGGATTTCGTATCGTTTCTGGCTCCAGTGAACCCCTTTTCCAGGTAAACCAAGATGATGGGATTTTATACGTAAATCGGAATATTGACCGTGAGGAAATATGCCAGCGGACTAATGTATGTTTGATAAACCTTAAATCCGTGCTAGAGAACCCACTGGAGATCCATTATGTTGCTGTGGAAGTGTTAGACATAAATGACCATTCGCCTTCTTTCCCGGAGAACAACAAAAGGCTAGAGATTTCAGAGTCCACCTTACCGGGAACCAGATTTCAGTTGCATGCTGCTCTCGATCCAGATGGTGGTGTGAATTCCGTTCAACAGTATAGGCTAAGTCCTAATAATAATTTTCGTCTAGAGGTGAAAGATAGCGGGAAAGATGGCAAAGTGCCTGTTTTACAGATACAAAGCCCGTTAGACAGAGAGACCTCTAGCAGCCACAAACTACTGCTCACAGCCATGGATGGGGGTAAACCTCCTAAATCAGGGACCATGGAAATATCTATAGACATATTAGATGTGAACGACAATGCGCCAGTTTTTACTAAAGATGTCTATTCTGTAGAGATAAATGAGGATTCGCCAATTGGAACAATAGTCATACGAGTAAATGCCACAGATATGGACGACGGATTAAATGGAGATGTTAGCTATTCTTTTGGTAATGTGAATAGTAAGGTGCGCGAACTGTTTGATGTCGACCCGAACACAGGTGAAATAACAGTGAAAGGACAATTAAACTATGAAGTGGATGACAGTTACGAGATTAATATCCAGGCATCTGACAGCGGTGCTGTTCCGTTTAGAACTGAAAAAAGcgttactgtaaatattaaagaCATAAATGACAATGCACCTATAATTGAGGTAACGTCACTGTCGAACACAATTTCAGAGGATTCCAGACCAGGAACAACGGTAGCACTTCTTAGCATTACCGATTTGGACTCTGGAGTAAACGGGAAAATTATAAGCTTTGCAAAAGGCGATGTCCCTTTCACACTAACGCCATCAATACAGGACAACATGTACGCTGTCGTGACAAAGTTGCAGCTTGACAGGGAAAATAAATCGATTTATGATGTAACAGTAATCGCAAAAGATGCAGGCGAACCAGCCTTAACGTCTGTAAAGACATTAAGAGTTGTTGTTTCTGACGTTAACGATAACAGCCCAGAGTTTTCAATAAGCCGATATAATTTTTATGTCACTGAAAATAACCCTCCCGGAATGTCGGTGTTTTATTTAACTGCGTCTGATCGTGACGAAGGAGATAATGCTCTTATTTCGTACAATATTCTAAGAGATGCAGTTTATGCAAATTCAGTGACGTCATTTCTCAGCATAAACTCTGAAACTGGAGATATTTCGGCGCTAAAAAGTTTTGACTTTGAAACACTGAAAACGTTCCAGTTCCAAGTTGTTGCCACAGATTCTGGAACTCCGTCACTAAGCAGCAACGTCACAGTGAACGTGTTCATTCTGGATCAGAACGACAACGCTCCAGTCATCCTGTATCCAGTCAGCTCTAACGGTTCTGCTGAAGGTGTGGAGGAGATTCCCCGCAATGTGAACGCAGGACACTTGGTGACTAAAGTCAGAGCCTATGACGCTGATATAGGATATAACGGCTGGTTActgttttcactgcaggacgTTACTGACCACAGTCTCTTTGGTTTGGACCGCTATACAGGACAGATCAGAACACTTCGCTCATTCACAGAGACAGACGAGGCGGAGCATAAACTGGTCATACTGGTGAAAGACAATGGGAACGTTTCACTCTCAGCAACAGCTACTGTGCTTGTCAAAGTTGTGGAGCCCAAAGAGGCTTTTGCTGCTTCTGATGTTAAAAGTGCAACaaaggatgaggaggagaataATGTGACTTTTTACCTGATGATAACTTTGGGCTCagtttcaacactttttctcaTCAGTATCATCGTGCTGATTGCAATGCAGTGCTCCAAAACCACAGActatacttctaaatatctacaagAGACTAATTATGATGGGACACTGTGTCACAGCATCCAGTACAGATCTGGAGACAAACGGTACATGCTAGTAGGACCCAGAATGAGTATAGGATCTACTATAGTCCCCGGCAGCCATGCGAATACACTAGTGCTCCCTGACAGGAGAGGGACATCTGGAGAGGTAAGACTTTAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_005640570.1 lncRNA upstream 97215 19973785 ~ 19998801 (+) True LOC120567444
XR_005640569.1 lncRNA upstream 97215 19973785 ~ 19998801 (+) False LOC120567444
XR_005640458.1 lncRNA upstream 141053 19950757 ~ 19954963 (+) True LOC120566743
TU142833 lncRNA upstream 154301 19940938 ~ 19941715 (+) True G106351
XR_005640411.1 lncRNA upstream 247738 19844839 ~ 19848278 (+) True LOC120566488
XR_005640536.1 lncRNA downstream 175254 20273833 ~ 20275911 (+) True LOC120567249
TU143143 lncRNA downstream 611930 20710509 ~ 20731673 (+) True G106577
TU143189 lncRNA downstream 848251 20946830 ~ 20947415 (+) False hrh2a
TU143269 lncRNA downstream 1001905 21100484 ~ 21100835 (+) True G106679
TU143274 lncRNA downstream 1008919 21107498 ~ 21108359 (+) True G106684
XM_039813058.1 mRNA upstream 10809 20082373 ~ 20085207 (+) True LOC120566533
XM_039813057.1 mRNA upstream 17647 20075753 ~ 20078369 (+) True LOC120566532
XM_039813056.1 mRNA upstream 21041 20072355 ~ 20074975 (+) True LOC120566530
XM_039814144.1 mRNA upstream 24959 20068463 ~ 20071057 (+) True LOC120567232
XM_039813055.1 mRNA upstream 28451 20064986 ~ 20067565 (+) True LOC120566529
XM_039814149.1 mRNA downstream 1014 20099593 ~ 20102097 (+) True LOC120567243
XM_039814067.1 mRNA downstream 4444 20103023 ~ 20256413 (+) False LOC120567189
XM_039814147.1 mRNA downstream 7344 20105923 ~ 20108462 (+) True LOC120567239
XM_039814059.1 mRNA downstream 10106 20108685 ~ 20256413 (+) False LOC120567189
XM_039814146.1 mRNA downstream 16343 20114922 ~ 20145603 (+) True LOC120567236
XR_005640374.1 other upstream 34678 20043031 ~ 20061338 (+) False LOC120566323
TU142686 other upstream 490243 19604840 ~ 19605773 (+) False G106237
TU142049 other upstream 2202486 17890967 ~ 17893530 (+) False gabra6a
TU141898 other upstream 2410317 17682919 ~ 17685699 (+) True G105677
TU141805 other upstream 2735755 17357929 ~ 17360261 (+) False LOC120566324
TU143018 other downstream 253142 20351721 ~ 20352167 (+) True G106465
XR_005640584.1 other downstream 1350225 21448804 ~ 21461450 (+) False stx3a
TU143990 other downstream 2763611 22862190 ~ 22865676 (+) True G107163
TU143997 other downstream 2856393 22954972 ~ 22973761 (+) True G107168
TU144145 other downstream 3159692 23258271 ~ 23262229 (+) False tgfb5

Expression Profile